RNA–Protein interactions for RNA: ENST00000503215.5

SCLT1-204, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 1,364 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-204ENST00000503215 ABCC11Q96J66 1382 aa24■■□□□ 1.43
SCLT1-204ENST00000503215 LRRC59Q96AG4 307 aaKnown RBP24■■□□□ 1.43
SCLT1-204ENST00000503215 TECPR2O15040 1411 aa23.99■■□□□ 1.43
SCLT1-204ENST00000503215 NUTM2FA1L443 756 aa23.97■■□□□ 1.43
SCLT1-204ENST00000503215 YTHDC2Q9H6S0 1430 aaKnown RBP23.97■■□□□ 1.43
SCLT1-204ENST00000503215 PNPLA6Q8IY17 1366 aa23.96■■□□□ 1.43
SCLT1-204ENST00000503215 NRXN1Q9ULB1 1477 aa23.96■■□□□ 1.43
SCLT1-204ENST00000503215 ESCO1Q5FWF5 840 aa23.94■■□□□ 1.42
SCLT1-204ENST00000503215 SOS2Q07890 1332 aaPredicted RBP23.94■■□□□ 1.42
SCLT1-204ENST00000503215 HRCP23327 699 aa23.93■■□□□ 1.42
SCLT1-204ENST00000503215 MYOM2P54296 1465 aa23.93■■□□□ 1.42
SCLT1-204ENST00000503215 CDC42BPGQ6DT37 1551 aa23.92■■□□□ 1.42
SCLT1-204ENST00000503215 KDM2AQ9Y2K7 1162 aa23.91■■□□□ 1.42
SCLT1-204ENST00000503215 XPCQ01831 940 aaPredicted RBP23.91■■□□□ 1.42
SCLT1-204ENST00000503215 LAMC1P11047 1609 aa23.9■■□□□ 1.42
SCLT1-204ENST00000503215 ZNF772Q68DY9 489 aaPredicted RBP23.9■■□□□ 1.42
SCLT1-204ENST00000503215 FOXO3O43524 673 aa23.89■■□□□ 1.41
SCLT1-204ENST00000503215 SAFB2Q14151 953 aaKnown RBP eCLIP23.89■■□□□ 1.411e-6■■■■□ 19.9
SCLT1-204ENST00000503215 SIRT1Q96EB6 747 aa23.89■■□□□ 1.41
SCLT1-204ENST00000503215 AFF2P51816 1311 aa23.89■■□□□ 1.41
SCLT1-204ENST00000503215 KNDC1Q76NI1 1749 aa23.89■■□□□ 1.41
SCLT1-204ENST00000503215 DHX57Q6P158 1386 aaKnown RBP23.88■■□□□ 1.41
SCLT1-204ENST00000503215 ADAMTS2O95450 1211 aa23.88■■□□□ 1.41
SCLT1-204ENST00000503215 DCAF11Q8TEB1 546 aa23.88■■□□□ 1.41
SCLT1-204ENST00000503215 C8orf37Q96NL8 207 aa23.88■■□□□ 1.41
SCLT1-204ENST00000503215 PRAM1Q96QH2 718 aa23.86■■□□□ 1.41
SCLT1-204ENST00000503215 NPHP3Q7Z494 1330 aa23.83■■□□□ 1.41
SCLT1-204ENST00000503215 PXDNQ92626 1479 aa23.82■■□□□ 1.4
SCLT1-204ENST00000503215 TRAK1Q9UPV9 953 aa23.81■■□□□ 1.4
SCLT1-204ENST00000503215 ADGRB1O14514 1584 aa23.8■■□□□ 1.4
SCLT1-204ENST00000503215 RXRBP28702 533 aa23.8■■□□□ 1.4
SCLT1-204ENST00000503215 FMN2Q9NZ56 1722 aa23.8■■□□□ 1.4
SCLT1-204ENST00000503215 NGLY1Q96IV0 654 aa23.79■■□□□ 1.4
SCLT1-204ENST00000503215 POGKQ9P215 609 aa23.79■■□□□ 1.4
SCLT1-204ENST00000503215 QTRT2Q9H974 415 aaKnown RBP23.78■■□□□ 1.4
SCLT1-204ENST00000503215 HIRIP3Q9BW71 556 aaPredicted RBP23.77■■□□□ 1.4
SCLT1-204ENST00000503215 PHF8Q9UPP1 1060 aa23.75■■□□□ 1.39
SCLT1-204ENST00000503215 DLC1Q96QB1 1528 aa23.75■■□□□ 1.39
SCLT1-204ENST00000503215 RGPD8O14715 1765 aaPredicted RBP23.74■■□□□ 1.39
SCLT1-204ENST00000503215 KRT28Q7Z3Y7 464 aa23.74■■□□□ 1.39
SCLT1-204ENST00000503215 MINK1Q8N4C8 1332 aaPredicted RBP23.73■■□□□ 1.39
SCLT1-204ENST00000503215 COL22A1Q8NFW1 1626 aaPredicted RBP23.73■■□□□ 1.39
SCLT1-204ENST00000503215 SPATA31A3Q5VYP0 1347 aa23.72■■□□□ 1.39
SCLT1-204ENST00000503215 STAC3Q96MF2 364 aa23.71■■□□□ 1.39
SCLT1-204ENST00000503215 FNBP4Q8N3X1 1017 aaPredicted RBP23.7■■□□□ 1.38
SCLT1-204ENST00000503215 USP21Q9UK80 565 aa23.7■■□□□ 1.38
SCLT1-204ENST00000503215 RBM6P78332 1123 aaKnown RBP23.69■■□□□ 1.38
SCLT1-204ENST00000503215 PMFBP1Q8TBY8 1022 aa23.69■■□□□ 1.38
SCLT1-204ENST00000503215 PRR36Q9H6K5 1346 aa23.68■■□□□ 1.38
SCLT1-204ENST00000503215 PLEKHG5O94827 1062 aa23.67■■□□□ 1.38
SCLT1-204ENST00000503215 UPF1Q92900 1129 aaKnown RBP eCLIP23.67■■□□□ 1.38
SCLT1-204ENST00000503215 USP32Q8NFA0 1604 aa23.67■■□□□ 1.38
SCLT1-204ENST00000503215 KIF1AQ12756 1690 aa23.67■■□□□ 1.38
SCLT1-204ENST00000503215 RGS12O14924 1447 aa23.66■■□□□ 1.38
SCLT1-204ENST00000503215 CDK12Q9NYV4 1490 aaPredicted RBP23.66■■□□□ 1.38
SCLT1-204ENST00000503215 CABLES1Q8TDN4 633 aa23.65■■□□□ 1.38
SCLT1-204ENST00000503215 PSME1Q06323 249 aa23.65■■□□□ 1.38
SCLT1-204ENST00000503215 NBPF1Q3BBV0 1214 aa23.65■■□□□ 1.38
SCLT1-204ENST00000503215 ADGRB2O60241 1585 aa23.64■■□□□ 1.37
SCLT1-204ENST00000503215 WASLO00401 505 aaPredicted RBP23.64■■□□□ 1.37
SCLT1-204ENST00000503215 BCL9LQ86UU0 1499 aa23.63■■□□□ 1.37
SCLT1-204ENST00000503215 ANKARQ7Z5J8 1434 aa23.63■■□□□ 1.37
SCLT1-204ENST00000503215 TRPC5Q9UL62 973 aaPredicted RBP23.63■■□□□ 1.37
SCLT1-204ENST00000503215 LMOD2Q6P5Q4 547 aa23.62■■□□□ 1.37
SCLT1-204ENST00000503215 ATRNO75882 1429 aa23.61■■□□□ 1.37
SCLT1-204ENST00000503215 TNS3Q68CZ2 1445 aa23.61■■□□□ 1.37
SCLT1-204ENST00000503215 SIN3AQ96ST3 1273 aa23.61■■□□□ 1.37
SCLT1-204ENST00000503215 SBNO1A3KN83 1393 aa23.6■■□□□ 1.37
SCLT1-204ENST00000503215 ARHGEF28Q8N1W1 1705 aaKnown RBP23.58■■□□□ 1.36
SCLT1-204ENST00000503215 TULP4Q9NRJ4 1543 aa23.57■■□□□ 1.36
SCLT1-204ENST00000503215 MARF1Q9Y4F3 1742 aaKnown RBP23.56■■□□□ 1.36
SCLT1-204ENST00000503215 L3MBTL2Q969R5 705 aa23.56■■□□□ 1.36
SCLT1-204ENST00000503215 NUDT16Q96DE0 195 aaKnown RBP23.54■■□□□ 1.36
SCLT1-204ENST00000503215 CDK19Q9BWU1 502 aa23.54■■□□□ 1.36
SCLT1-204ENST00000503215 HAP1P54257 671 aaPredicted RBP23.53■■□□□ 1.36
SCLT1-204ENST00000503215 UNC5CLQ8IV45 518 aa23.53■■□□□ 1.36
SCLT1-204ENST00000503215 SLIT2O94813 1529 aa23.53■■□□□ 1.36
SCLT1-204ENST00000503215 EIF3AQ14152 1382 aaKnown RBP23.53■■□□□ 1.36
SCLT1-204ENST00000503215 NEUROD1Q13562 356 aa23.52■■□□□ 1.36
SCLT1-204ENST00000503215 NGDNQ8NEJ9 315 aaKnown RBP23.52■■□□□ 1.36
SCLT1-204ENST00000503215 GJD4Q96KN9 370 aaPredicted RBP23.52■■□□□ 1.36
SCLT1-204ENST00000503215 ARHGEF10O15013 1369 aa23.52■■□□□ 1.36
SCLT1-204ENST00000503215 TRPM3Q9HCF6 1732 aaPredicted RBP23.51■■□□□ 1.35
SCLT1-204ENST00000503215 GPRASP1Q5JY77 1395 aa23.51■■□□□ 1.35
SCLT1-204ENST00000503215 FAM83GA6ND36 823 aa23.51■■□□□ 1.35
SCLT1-204ENST00000503215 KIAA1210Q9ULL0 1709 aa23.5■■□□□ 1.35
SCLT1-204ENST00000503215 ATP7BP35670 1465 aa23.5■■□□□ 1.35
SCLT1-204ENST00000503215 PAK3O75914 559 aaPredicted RBP23.48■■□□□ 1.35
SCLT1-204ENST00000503215 RALGAPBQ86X10 1494 aa23.46■■□□□ 1.35
SCLT1-204ENST00000503215 ABCA3Q99758 1704 aa23.46■■□□□ 1.35
SCLT1-204ENST00000503215 ALS2Q96Q42 1657 aa23.45■■□□□ 1.34
SCLT1-204ENST00000503215 GLI3P10071 1580 aa23.44■■□□□ 1.34
SCLT1-204ENST00000503215 CCDC61Q9Y6R9 512 aa23.43■■□□□ 1.34
SCLT1-204ENST00000503215 ACEP12821 1306 aa23.43■■□□□ 1.34
SCLT1-204ENST00000503215 CENPJQ9HC77 1338 aaPredicted RBP23.43■■□□□ 1.34
SCLT1-204ENST00000503215 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.43■■□□□ 1.34
SCLT1-204ENST00000503215 ATAD2Q6PL18 1390 aa23.42■■□□□ 1.34
SCLT1-204ENST00000503215 VPS72Q15906 364 aa23.41■■□□□ 1.34
SCLT1-204ENST00000503215 NBPF8Q3BBV2 869 aa23.41■■□□□ 1.34
SCLT1-204ENST00000503215 NUTM2GQ5VZR2 741 aa23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms