RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 BCAR3O75815 825 aa13.36□□□□□ -0.27
LIMCH1-205ENST00000503057 HMOX1P09601 288 aa13.36□□□□□ -0.27
LIMCH1-205ENST00000503057 DHX29Q7Z478 1369 aaKnown RBP13.36□□□□□ -0.27
LIMCH1-205ENST00000503057 LTV1Q96GA3 475 aaPredicted RBP13.36□□□□□ -0.27
LIMCH1-205ENST00000503057 TEX14Q8IWB6 1497 aa13.35□□□□□ -0.27
LIMCH1-205ENST00000503057 CDK19Q9BWU1 502 aa13.35□□□□□ -0.27
LIMCH1-205ENST00000503057 CSB-PGBD3P0DP91 1061 aa13.35□□□□□ -0.27
LIMCH1-205ENST00000503057 UHRF1BP1Q6BDS2 1440 aa13.35□□□□□ -0.27
LIMCH1-205ENST00000503057 GOLGA6L4A6NEF3 574 aa13.34□□□□□ -0.27
LIMCH1-205ENST00000503057 RAPGEF3O95398 923 aa13.34□□□□□ -0.27
LIMCH1-205ENST00000503057 MSNP26038 577 aaKnown RBP13.34□□□□□ -0.27
LIMCH1-205ENST00000503057 DNTTIP2Q5QJE6 756 aaKnown RBP13.34□□□□□ -0.27
LIMCH1-205ENST00000503057 KDM5BQ9UGL1 1544 aa13.34□□□□□ -0.27
LIMCH1-205ENST00000503057 EXOSC9Q06265 439 aaKnown RBP13.34□□□□□ -0.27
LIMCH1-205ENST00000503057 NKTRP30414 1462 aaKnown RBP13.34□□□□□ -0.27
LIMCH1-205ENST00000503057 SYAP1Q96A49 352 aaPredicted RBP13.33□□□□□ -0.27
LIMCH1-205ENST00000503057 WWC1Q8IX03 1113 aa13.33□□□□□ -0.28
LIMCH1-205ENST00000503057 ADGRF5Q8IZF2 1346 aa13.33□□□□□ -0.28
LIMCH1-205ENST00000503057 PRKAR2BP31323 418 aa13.33□□□□□ -0.28
LIMCH1-205ENST00000503057 PARD3Q8TEW0 1356 aa13.32□□□□□ -0.28
LIMCH1-205ENST00000503057 CEP170Q5SW79 1584 aa13.32□□□□□ -0.28
LIMCH1-205ENST00000503057 RTEL1-TNFRSF6BF6WH68 1400 aa13.31□□□□□ -0.28
LIMCH1-205ENST00000503057 SKOR2Q2VWA4 1001 aaPredicted RBP13.31□□□□□ -0.28
LIMCH1-205ENST00000503057 C22orf23Q9BZE7 217 aa13.31□□□□□ -0.28
LIMCH1-205ENST00000503057 PLCB2Q00722 1185 aa13.31□□□□□ -0.28
LIMCH1-205ENST00000503057 FOXD4L1Q9NU39 408 aa13.31□□□□□ -0.28
LIMCH1-205ENST00000503057 CABP1Q9NZU7 370 aa13.31□□□□□ -0.28
LIMCH1-205ENST00000503057 NOS1P29475 1434 aa13.31□□□□□ -0.28
LIMCH1-205ENST00000503057 CHMP5Q9NZZ3 219 aa13.31□□□□□ -0.28
LIMCH1-205ENST00000503057 PDZRN3Q9UPQ7 1066 aa13.31□□□□□ -0.28
LIMCH1-205ENST00000503057 REC8O95072 547 aa13.3□□□□□ -0.28
LIMCH1-205ENST00000503057 ASXL1Q8IXJ9 1541 aa13.3□□□□□ -0.28
LIMCH1-205ENST00000503057 C1orf141Q5JVX7 400 aa13.3□□□□□ -0.28
LIMCH1-205ENST00000503057 NSD2O96028 1365 aa13.3□□□□□ -0.28
LIMCH1-205ENST00000503057 ZNF692Q9BU19 519 aaPredicted RBP13.3□□□□□ -0.28
LIMCH1-205ENST00000503057 NAP1L2Q9ULW6 460 aaPredicted RBP13.3□□□□□ -0.28
LIMCH1-205ENST00000503057 ABCC2Q92887 1545 aa13.3□□□□□ -0.28
LIMCH1-205ENST00000503057 GOLGA6L6A8MZA4 724 aa13.29□□□□□ -0.28
LIMCH1-205ENST00000503057 LNPKQ9C0E8 428 aa13.29□□□□□ -0.28
LIMCH1-205ENST00000503057 MVPQ14764 893 aaKnown RBP13.29□□□□□ -0.28
LIMCH1-205ENST00000503057 TSR2Q969E8 191 aaKnown RBP13.29□□□□□ -0.28
LIMCH1-205ENST00000503057 TSPYL4Q9UJ04 414 aa13.29□□□□□ -0.28
LIMCH1-205ENST00000503057 NOB1Q9ULX3 412 aaKnown RBP13.29□□□□□ -0.28
LIMCH1-205ENST00000503057 WDR7Q9Y4E6 1490 aa13.29□□□□□ -0.28
LIMCH1-205ENST00000503057 NFKBIBQ15653 356 aa13.28□□□□□ -0.28
LIMCH1-205ENST00000503057 TEFQ10587 303 aa13.28□□□□□ -0.28
LIMCH1-205ENST00000503057 MAST1Q9Y2H9 1570 aa13.28□□□□□ -0.28
LIMCH1-205ENST00000503057 INTS3Q68E01 1043 aaKnown RBP13.28□□□□□ -0.28
LIMCH1-205ENST00000503057 CSPP1Q1MSJ5 1256 aa13.27□□□□□ -0.28
LIMCH1-205ENST00000503057 C14orf93Q9H972 538 aaKnown RBP13.27□□□□□ -0.28
LIMCH1-205ENST00000503057 DENND4BO75064 1496 aaPredicted RBP13.27□□□□□ -0.28
LIMCH1-205ENST00000503057 GCC1Q96CN9 775 aa13.27□□□□□ -0.28
LIMCH1-205ENST00000503057 FCHSD2O94868 740 aa13.27□□□□□ -0.29
LIMCH1-205ENST00000503057 RILPL2Q969X0 211 aa13.27□□□□□ -0.29
LIMCH1-205ENST00000503057 ATF7IPQ6VMQ6 1270 aa13.27□□□□□ -0.29
LIMCH1-205ENST00000503057 TRAPPC8Q9Y2L5 1435 aa13.27□□□□□ -0.29
LIMCH1-205ENST00000503057 ARHGEF5Q12774 1597 aa13.27□□□□□ -0.29
LIMCH1-205ENST00000503057 ZNF428Q96B54 188 aa13.26□□□□□ -0.29
LIMCH1-205ENST00000503057 TWISTNBQ3B726 338 aaPredicted RBP13.26□□□□□ -0.29
LIMCH1-205ENST00000503057 DUSP27Q5VZP5 1158 aa13.26□□□□□ -0.29
LIMCH1-205ENST00000503057 HTATSF1O43719 755 aaKnown RBP13.26□□□□□ -0.29
LIMCH1-205ENST00000503057 CDC45O75419 566 aa13.26□□□□□ -0.29
LIMCH1-205ENST00000503057 TXNDC2Q86VQ3 553 aa13.26□□□□□ -0.29
LIMCH1-205ENST00000503057 LRPPRCP42704 1394 aaKnown RBP13.25□□□□□ -0.29
LIMCH1-205ENST00000503057 FKBP5Q13451 457 aaPredicted RBP13.25□□□□□ -0.29
LIMCH1-205ENST00000503057 ABCC11Q96J66 1382 aa13.25□□□□□ -0.29
LIMCH1-205ENST00000503057 ZNF518AQ6AHZ1 1483 aa13.25□□□□□ -0.29
LIMCH1-205ENST00000503057 COL17A1Q9UMD9 1497 aaPredicted RBP13.25□□□□□ -0.29
LIMCH1-205ENST00000503057 GAS2L2Q8NHY3 880 aa13.25□□□□□ -0.29
LIMCH1-205ENST00000503057 TMPOP42166 694 aaKnown RBP13.24□□□□□ -0.29
LIMCH1-205ENST00000503057 ASXL2Q76L83 1435 aa13.24□□□□□ -0.29
LIMCH1-205ENST00000503057 PHF14O94880 888 aa13.24□□□□□ -0.29
LIMCH1-205ENST00000503057 A2MP01023 1474 aa13.24□□□□□ -0.29
LIMCH1-205ENST00000503057 GPRASP1Q5JY77 1395 aa13.24□□□□□ -0.29
LIMCH1-205ENST00000503057 PSME1Q06323 249 aa13.23□□□□□ -0.29
LIMCH1-205ENST00000503057 C20orf194Q5TEA3 1177 aa13.23□□□□□ -0.29
LIMCH1-205ENST00000503057 NOL8Q76FK4 1167 aaKnown RBP13.23□□□□□ -0.29
LIMCH1-205ENST00000503057 TESK2Q96S53 571 aa13.23□□□□□ -0.29
LIMCH1-205ENST00000503057 RARSP54136 660 aaKnown RBP13.22□□□□□ -0.29
LIMCH1-205ENST00000503057 EIF2S2P20042 333 aaKnown RBP13.22□□□□□ -0.29
LIMCH1-205ENST00000503057 AMER1Q5JTC6 1135 aaPredicted RBP13.22□□□□□ -0.29
LIMCH1-205ENST00000503057 DDX49Q9Y6V7 483 aaKnown RBP13.22□□□□□ -0.29
LIMCH1-205ENST00000503057 KDM6BO15054 1643 aa13.22□□□□□ -0.29
LIMCH1-205ENST00000503057 NRDCO43847 1150 aa13.22□□□□□ -0.29
LIMCH1-205ENST00000503057 CHAF1AQ13111 956 aaPredicted RBP13.22□□□□□ -0.29
LIMCH1-205ENST00000503057 CHMP3Q9Y3E7 222 aa13.21□□□□□ -0.29
LIMCH1-205ENST00000503057 RUFY2Q8WXA3 655 aa13.21□□□□□ -0.29
LIMCH1-205ENST00000503057 NFE2L2Q16236 605 aa13.21□□□□□ -0.29
LIMCH1-205ENST00000503057 MSH5O43196 834 aa13.21□□□□□ -0.3
LIMCH1-205ENST00000503057 NLRP6P59044 892 aa13.21□□□□□ -0.3
LIMCH1-205ENST00000503057 HSP90AB4PQ58FF6 505 aa13.21□□□□□ -0.3
LIMCH1-205ENST00000503057 CCDC30Q5VVM6 783 aa13.21□□□□□ -0.3
LIMCH1-205ENST00000503057 C9orf78Q9NZ63 289 aaPredicted RBP13.2□□□□□ -0.3
LIMCH1-205ENST00000503057 ABCA8O94911 1581 aa13.2□□□□□ -0.3
LIMCH1-205ENST00000503057 NECTIN2Q92692 538 aa13.2□□□□□ -0.3
LIMCH1-205ENST00000503057 PPP6R1Q9UPN7 881 aa13.2□□□□□ -0.3
LIMCH1-205ENST00000503057 PIK3C2GO75747 1445 aa13.2□□□□□ -0.3
LIMCH1-205ENST00000503057 NEXNQ0ZGT2 675 aa13.2□□□□□ -0.3
LIMCH1-205ENST00000503057 ABCC10Q5T3U5 1492 aa13.2□□□□□ -0.3
LIMCH1-205ENST00000503057 DDX58O95786 925 aaKnown RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms