RNA–Protein interactions for RNA: ENST00000496393.2

NVL-223, Transcript of nuclear VCP-like, human

TSL 3

Gene NVL, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NVL-223	ENST00000496393	RGS12	O14924	1447 aa		12.13	□□□□□ -0.47
NVL-223	ENST00000496393	MST1R	Q04912	1400 aa		12.13	□□□□□ -0.47
NVL-223	ENST00000496393	C8orf37	Q96NL8	207 aa		12.13	□□□□□ -0.47
NVL-223	ENST00000496393	HAX1	O00165	279 aa		12.12	□□□□□ -0.47
NVL-223	ENST00000496393	CDK12	Q9NYV4	1490 aa	Predicted RBP	12.12	□□□□□ -0.47
NVL-223	ENST00000496393	DCC	P43146	1447 aa		12.11	□□□□□ -0.47
NVL-223	ENST00000496393	SETD5	Q9C0A6	1442 aa		12.11	□□□□□ -0.47
NVL-223	ENST00000496393	SETBP1	Q9Y6X0	1596 aa		12.1	□□□□□ -0.47
NVL-223	ENST00000496393	NUP155	O75694	1391 aa		12.1	□□□□□ -0.47
NVL-223	ENST00000496393	ITGAE	P38570	1179 aa		12.1	□□□□□ -0.47
NVL-223	ENST00000496393	NALCN	Q8IZF0	1738 aa		12.1	□□□□□ -0.47
NVL-223	ENST00000496393	MET	P08581	1390 aa		12.09	□□□□□ -0.47
NVL-223	ENST00000496393	PNPLA6	Q8IY17	1366 aa		12.09	□□□□□ -0.47
NVL-223	ENST00000496393	ADAMTS2	O95450	1211 aa		12.09	□□□□□ -0.47
NVL-223	ENST00000496393	ZNF326	Q5BKZ1	582 aa	Known RBP	12.09	□□□□□ -0.47
NVL-223	ENST00000496393	SPHKAP	Q2M3C7	1700 aa		12.08	□□□□□ -0.47
NVL-223	ENST00000496393	MKRN4P	Q13434	485 aa	Predicted RBP	12.08	□□□□□ -0.48
NVL-223	ENST00000496393	ADGRL3	Q9HAR2	1447 aa		12.08	□□□□□ -0.48
NVL-223	ENST00000496393	LRRC59	Q96AG4	307 aa	Known RBP	12.07	□□□□□ -0.48
NVL-223	ENST00000496393	QTRT2	Q9H974	415 aa	Known RBP	12.07	□□□□□ -0.48
NVL-223	ENST00000496393	ROCK1	Q13464	1354 aa		12.06	□□□□□ -0.48
NVL-223	ENST00000496393	RBM6	P78332	1123 aa	Known RBP	12.06	□□□□□ -0.48
NVL-223	ENST00000496393	EVX2	Q03828	476 aa		12.06	□□□□□ -0.48
NVL-223	ENST00000496393	SPDYE2B	A6NHP3	402 aa		12.05	□□□□□ -0.48
NVL-223	ENST00000496393	SPDYE6	P0CI01	402 aa		12.05	□□□□□ -0.48
NVL-223	ENST00000496393	SPDYE2	Q495Y8	402 aa		12.05	□□□□□ -0.48
NVL-223	ENST00000496393	NGLY1	Q96IV0	654 aa		12.05	□□□□□ -0.48
NVL-223	ENST00000496393	CLTCL1	P53675	1640 aa		12.04	□□□□□ -0.48
NVL-223	ENST00000496393	NEXMIF	Q5QGS0	1516 aa		12.04	□□□□□ -0.48
NVL-223	ENST00000496393	C1orf167	Q5SNV9	1468 aa		12.03	□□□□□ -0.48
NVL-223	ENST00000496393	ATAD2	Q6PL18	1390 aa		12.02	□□□□□ -0.49
NVL-223	ENST00000496393	PPARGC1B	Q86YN6	1023 aa	Known RBP	12.01	□□□□□ -0.49
NVL-223	ENST00000496393	ORAI2	Q96SN7	254 aa		12.01	□□□□□ -0.49
NVL-223	ENST00000496393	USP21	Q9UK80	565 aa		12.01	□□□□□ -0.49
NVL-223	ENST00000496393	ROBO2	Q9HCK4	1378 aa		12	□□□□□ -0.49
NVL-223	ENST00000496393	SRCAP	Q6ZRS2	3230 aa		11.99	□□□□□ -0.49
NVL-223	ENST00000496393	LAMC1	P11047	1609 aa		11.99	□□□□□ -0.49
NVL-223	ENST00000496393	KIF1B	O60333	1816 aa		11.98	□□□□□ -0.49
NVL-223	ENST00000496393	PTCH1	Q13635	1447 aa		11.98	□□□□□ -0.49
NVL-223	ENST00000496393	SOS2	Q07890	1332 aa	Predicted RBP	11.98	□□□□□ -0.49
NVL-223	ENST00000496393	TRPC5	Q9UL62	973 aa	Predicted RBP	11.98	□□□□□ -0.49
NVL-223	ENST00000496393	CLEC11A	Q9Y240	323 aa		11.98	□□□□□ -0.49
NVL-223	ENST00000496393	ATRN	O75882	1429 aa		11.97	□□□□□ -0.49
NVL-223	ENST00000496393	XPC	Q01831	940 aa	Predicted RBP	11.96	□□□□□ -0.49
NVL-223	ENST00000496393	COL22A1	Q8NFW1	1626 aa	Predicted RBP	11.96	□□□□□ -0.5
NVL-223	ENST00000496393	ZNF692	Q9BU19	519 aa	Predicted RBP	11.95	□□□□□ -0.5
NVL-223	ENST00000496393	MYOM2	P54296	1465 aa		11.95	□□□□□ -0.5
NVL-223	ENST00000496393	FNBP4	Q8N3X1	1017 aa	Predicted RBP	11.94	□□□□□ -0.5
NVL-223	ENST00000496393	ZRANB1	Q9UGI0	708 aa		11.94	□□□□□ -0.5
NVL-223	ENST00000496393	NUTM2F	A1L443	756 aa		11.93	□□□□□ -0.5
NVL-223	ENST00000496393	PRKAR2A	P13861	404 aa	Known RBP	11.93	□□□□□ -0.5
NVL-223	ENST00000496393	ESCO1	Q5FWF5	840 aa		11.93	□□□□□ -0.5
NVL-223	ENST00000496393	MARF1	Q9Y4F3	1742 aa	Known RBP	11.93	□□□□□ -0.5
NVL-223	ENST00000496393	BCL9L	Q86UU0	1499 aa		11.92	□□□□□ -0.5
NVL-223	ENST00000496393	PXDN	Q92626	1479 aa		11.92	□□□□□ -0.5
NVL-223	ENST00000496393	EP400	Q96L91	3159 aa		11.92	□□□□□ -0.5
NVL-223	ENST00000496393	HFM1	A2PYH4	1435 aa		11.92	□□□□□ -0.5
NVL-223	ENST00000496393	CDC42BPG	Q6DT37	1551 aa		11.92	□□□□□ -0.5
NVL-223	ENST00000496393	VGF	O15240	615 aa	Predicted RBP	11.91	□□□□□ -0.5
NVL-223	ENST00000496393	PPL	O60437	1756 aa		11.91	□□□□□ -0.5
NVL-223	ENST00000496393	NPHP3	Q7Z494	1330 aa		11.9	□□□□□ -0.5
NVL-223	ENST00000496393	FOXO3	O43524	673 aa		11.9	□□□□□ -0.5
NVL-223	ENST00000496393	PRAG1	Q86YV5	1406 aa		11.9	□□□□□ -0.5
NVL-223	ENST00000496393	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.9	□□□□□ -0.5
NVL-223	ENST00000496393	SSUH2	Q9Y2M2	353 aa		11.9	□□□□□ -0.5
NVL-223	ENST00000496393	GLI3	P10071	1580 aa		11.89	□□□□□ -0.51
NVL-223	ENST00000496393	NAIP	Q13075	1403 aa		11.89	□□□□□ -0.51
NVL-223	ENST00000496393	PLEKHG5	O94827	1062 aa		11.89	□□□□□ -0.51
NVL-223	ENST00000496393	GJD4	Q96KN9	370 aa	Predicted RBP	11.89	□□□□□ -0.51
NVL-223	ENST00000496393	STK26	Q9P289	416 aa		11.89	□□□□□ -0.51
NVL-223	ENST00000496393	RALGAPB	Q86X10	1494 aa		11.88	□□□□□ -0.51
NVL-223	ENST00000496393	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	11.87	□□□□□ -0.51
NVL-223	ENST00000496393	DEFB132	Q7Z7B7	95 aa		11.87	□□□□□ -0.51
NVL-223	ENST00000496393	BRWD3	Q6RI45	1802 aa		11.86	□□□□□ -0.51
NVL-223	ENST00000496393	WAPL	Q7Z5K2	1190 aa		11.86	□□□□□ -0.51
NVL-223	ENST00000496393	PLEKHH1	Q9ULM0	1364 aa		11.86	□□□□□ -0.51
NVL-223	ENST00000496393	USP32	Q8NFA0	1604 aa		11.86	□□□□□ -0.51
NVL-223	ENST00000496393	RPGRIP1L	Q68CZ1	1315 aa		11.86	□□□□□ -0.51
NVL-223	ENST00000496393	ADGRF5	Q8IZF2	1346 aa		11.86	□□□□□ -0.51
NVL-223	ENST00000496393	CCDC125	Q86Z20	511 aa		11.85	□□□□□ -0.51
NVL-223	ENST00000496393	UNC5CL	Q8IV45	518 aa		11.85	□□□□□ -0.51
NVL-223	ENST00000496393	SLIT2	O94813	1529 aa		11.85	□□□□□ -0.51
NVL-223	ENST00000496393	BLM	P54132	1417 aa	Predicted RBP	11.85	□□□□□ -0.51
NVL-223	ENST00000496393	LRPPRC	P42704	1394 aa	Known RBP	11.84	□□□□□ -0.51
NVL-223	ENST00000496393	FMN2	Q9NZ56	1722 aa		11.84	□□□□□ -0.51
NVL-223	ENST00000496393	RRBP1	Q9P2E9	1410 aa	Known RBP	11.84	□□□□□ -0.51
NVL-223	ENST00000496393	HAP1	P54257	671 aa	Predicted RBP	11.83	□□□□□ -0.52
NVL-223	ENST00000496393	RGL3	Q3MIN7	710 aa		11.83	□□□□□ -0.52
NVL-223	ENST00000496393	TMEM132E	Q6IEE7	984 aa		11.83	□□□□□ -0.52
NVL-223	ENST00000496393	KIF1A	Q12756	1690 aa		11.83	□□□□□ -0.52
NVL-223	ENST00000496393	SPATA31A3	Q5VYP0	1347 aa		11.83	□□□□□ -0.52
NVL-223	ENST00000496393	PLCH1	Q4KWH8	1693 aa		11.82	□□□□□ -0.52
NVL-223	ENST00000496393	CHADL	Q6NUI6	762 aa		11.82	□□□□□ -0.52
NVL-223	ENST00000496393	CABLES1	Q8TDN4	633 aa		11.82	□□□□□ -0.52
NVL-223	ENST00000496393	CCDC9	Q9Y3X0	531 aa	Known RBP	11.82	□□□□□ -0.52
NVL-223	ENST00000496393	CCDC144A	A2RUR9	1427 aa		11.82	□□□□□ -0.52
NVL-223	ENST00000496393	KNDC1	Q76NI1	1749 aa		11.82	□□□□□ -0.52
NVL-223	ENST00000496393	IFT172	Q9UG01	1749 aa		11.81	□□□□□ -0.52
NVL-223	ENST00000496393	TECPR2	O15040	1411 aa		11.81	□□□□□ -0.52
NVL-223	ENST00000496393	SF3B2	Q13435	895 aa	Known RBP	11.81	□□□□□ -0.52

Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms