RNA–Protein interactions for RNA: ENST00000496024.1

CALD1-223, Transcript of caldesmon 1, human

TSL 4

Gene CALD1, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALD1-223	ENST00000496024	FAM135B	Q49AJ0	1406 aa		14.08	□□□□□ -0.15
CALD1-223	ENST00000496024	KIAA1210	Q9ULL0	1709 aa		14.08	□□□□□ -0.16
CALD1-223	ENST00000496024	NUTM2F	A1L443	756 aa		14.08	□□□□□ -0.16
CALD1-223	ENST00000496024	NBPF8	Q3BBV2	869 aa		14.07	□□□□□ -0.16
CALD1-223	ENST00000496024	SIRT1	Q96EB6	747 aa		14.07	□□□□□ -0.16
CALD1-223	ENST00000496024	MST1R	Q04912	1400 aa		14.07	□□□□□ -0.16
CALD1-223	ENST00000496024	HIRIP3	Q9BW71	556 aa	Predicted RBP	14.06	□□□□□ -0.16
CALD1-223	ENST00000496024	MINK1	Q8N4C8	1332 aa	Predicted RBP	14.06	□□□□□ -0.16
CALD1-223	ENST00000496024	DLC1	Q96QB1	1528 aa		14.05	□□□□□ -0.16
CALD1-223	ENST00000496024	BRINP3	Q76B58	766 aa		14.05	□□□□□ -0.16
CALD1-223	ENST00000496024	C1orf167	Q5SNV9	1468 aa		14.04	□□□□□ -0.16
CALD1-223	ENST00000496024	TRPM1	Q7Z4N2	1603 aa		14.04	□□□□□ -0.16
CALD1-223	ENST00000496024	ARHGEF28	Q8N1W1	1705 aa	Known RBP	14.04	□□□□□ -0.16
CALD1-223	ENST00000496024	DDX17	Q92841	729 aa	Known RBP	14.03	□□□□□ -0.16
CALD1-223	ENST00000496024	ORAI2	Q96SN7	254 aa		14.03	□□□□□ -0.16
CALD1-223	ENST00000496024	ROCK2	O75116	1388 aa	Known RBP	14.03	□□□□□ -0.16
CALD1-223	ENST00000496024	CDC42BPG	Q6DT37	1551 aa		14.03	□□□□□ -0.16
CALD1-223	ENST00000496024	PHLPP1	O60346	1717 aa		14.02	□□□□□ -0.16
CALD1-223	ENST00000496024	CLSPN	Q9HAW4	1339 aa		14.02	□□□□□ -0.17
CALD1-223	ENST00000496024	ESCO1	Q5FWF5	840 aa		14.01	□□□□□ -0.17
CALD1-223	ENST00000496024	FMN2	Q9NZ56	1722 aa		14	□□□□□ -0.17
CALD1-223	ENST00000496024	RGPD8	O14715	1765 aa	Predicted RBP	13.99	□□□□□ -0.17
CALD1-223	ENST00000496024	CARD11	Q9BXL7	1154 aa		13.99	□□□□□ -0.17
CALD1-223	ENST00000496024	CENPJ	Q9HC77	1338 aa	Predicted RBP	13.98	□□□□□ -0.17
CALD1-223	ENST00000496024	WASL	O00401	505 aa	Predicted RBP	13.97	□□□□□ -0.17
CALD1-223	ENST00000496024	RALGAPB	Q86X10	1494 aa		13.97	□□□□□ -0.17
CALD1-223	ENST00000496024	XPC	Q01831	940 aa	Predicted RBP	13.96	□□□□□ -0.17
CALD1-223	ENST00000496024	AHDC1	Q5TGY3	1603 aa	Predicted RBP	13.96	□□□□□ -0.17
CALD1-223	ENST00000496024	ADGRB2	O60241	1585 aa		13.96	□□□□□ -0.18
CALD1-223	ENST00000496024	QRICH2	Q9H0J4	1663 aa		13.95	□□□□□ -0.18
CALD1-223	ENST00000496024	COL16A1	Q07092	1604 aa	Predicted RBP	13.95	□□□□□ -0.18
CALD1-223	ENST00000496024	NHSL1	Q5SYE7	1610 aa		13.95	□□□□□ -0.18
CALD1-223	ENST00000496024	FOXO3	O43524	673 aa		13.95	□□□□□ -0.18
CALD1-223	ENST00000496024	CDK19	Q9BWU1	502 aa		13.95	□□□□□ -0.18
CALD1-223	ENST00000496024	GPRASP1	Q5JY77	1395 aa		13.95	□□□□□ -0.18
CALD1-223	ENST00000496024	PMFBP1	Q8TBY8	1022 aa		13.94	□□□□□ -0.18
CALD1-223	ENST00000496024	TIMELESS	Q9UNS1	1208 aa		13.94	□□□□□ -0.18
CALD1-223	ENST00000496024	PHF8	Q9UPP1	1060 aa		13.94	□□□□□ -0.18
CALD1-223	ENST00000496024	PRR36	Q9H6K5	1346 aa		13.93	□□□□□ -0.18
CALD1-223	ENST00000496024	EIF3A	Q14152	1382 aa	Known RBP	13.93	□□□□□ -0.18
CALD1-223	ENST00000496024	JCAD	Q9P266	1359 aa		13.93	□□□□□ -0.18
CALD1-223	ENST00000496024	USP32	Q8NFA0	1604 aa		13.93	□□□□□ -0.18
CALD1-223	ENST00000496024	SRPK2	P78362	688 aa	Known RBP	13.92	□□□□□ -0.18
CALD1-223	ENST00000496024	NUDT16	Q96DE0	195 aa	Known RBP	13.92	□□□□□ -0.18
CALD1-223	ENST00000496024	NPHP3	Q7Z494	1330 aa		13.91	□□□□□ -0.18
CALD1-223	ENST00000496024	ANKAR	Q7Z5J8	1434 aa		13.91	□□□□□ -0.18
CALD1-223	ENST00000496024	TULP4	Q9NRJ4	1543 aa		13.91	□□□□□ -0.18
CALD1-223	ENST00000496024	LRRC59	Q96AG4	307 aa	Known RBP	13.91	□□□□□ -0.18
CALD1-223	ENST00000496024	CABP2	Q9NPB3	220 aa		13.91	□□□□□ -0.18
CALD1-223	ENST00000496024	DISP3	Q9P2K9	1392 aa		13.91	□□□□□ -0.18
CALD1-223	ENST00000496024	KRT28	Q7Z3Y7	464 aa		13.9	□□□□□ -0.18
CALD1-223	ENST00000496024	KIF1A	Q12756	1690 aa		13.9	□□□□□ -0.18
CALD1-223	ENST00000496024	SOS2	Q07890	1332 aa	Predicted RBP	13.9	□□□□□ -0.19
CALD1-223	ENST00000496024	MED1	Q15648	1581 aa	Predicted RBP	13.89	□□□□□ -0.19
CALD1-223	ENST00000496024	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.89	□□□□□ -0.19
CALD1-223	ENST00000496024	NUTM2E	B1AL46	878 aa	Predicted RBP	13.89	□□□□□ -0.19
CALD1-223	ENST00000496024	PSME1	Q06323	249 aa		13.89	□□□□□ -0.19
CALD1-223	ENST00000496024	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.89	□□□□□ -0.19
CALD1-223	ENST00000496024	NGDN	Q8NEJ9	315 aa	Known RBP	13.89	□□□□□ -0.19
CALD1-223	ENST00000496024	EVC2	Q86UK5	1308 aa		13.89	□□□□□ -0.19
CALD1-223	ENST00000496024	PLEKHG5	O94827	1062 aa		13.88	□□□□□ -0.19
CALD1-223	ENST00000496024	ATP7B	P35670	1465 aa		13.87	□□□□□ -0.19
CALD1-223	ENST00000496024	PXDN	Q92626	1479 aa		13.87	□□□□□ -0.19
CALD1-223	ENST00000496024	ST20-MTHFS	A0A0A6YYL1	179 aa		13.87	□□□□□ -0.19
CALD1-223	ENST00000496024	LMOD2	Q6P5Q4	547 aa		13.87	□□□□□ -0.19
CALD1-223	ENST00000496024	PHF23	Q9BUL5	403 aa	Predicted RBP	13.87	□□□□□ -0.19
CALD1-223	ENST00000496024	SHPRH	Q149N8	1683 aa		13.87	□□□□□ -0.19
CALD1-223	ENST00000496024	ITSN1	Q15811	1721 aa		13.87	□□□□□ -0.19
CALD1-223	ENST00000496024	MEX3C	Q5U5Q3	659 aa	Known RBP	13.86	□□□□□ -0.19
CALD1-223	ENST00000496024	CCDC61	Q9Y6R9	512 aa		13.86	□□□□□ -0.19
CALD1-223	ENST00000496024	PNPLA6	Q8IY17	1366 aa		13.85	□□□□□ -0.19
CALD1-223	ENST00000496024	USP47	Q96K76	1375 aa		13.85	□□□□□ -0.19
CALD1-223	ENST00000496024	SPATA31A6	Q5VVP1	1343 aa		13.85	□□□□□ -0.19
CALD1-223	ENST00000496024	PAK3	O75914	559 aa	Predicted RBP	13.84	□□□□□ -0.19
CALD1-223	ENST00000496024	PPIP5K1	Q6PFW1	1433 aa		13.83	□□□□□ -0.2
CALD1-223	ENST00000496024	TOPAZ1	Q8N9V7	1692 aa		13.83	□□□□□ -0.2
CALD1-223	ENST00000496024	CABP1	Q9NZU7	370 aa		13.83	□□□□□ -0.2
CALD1-223	ENST00000496024	ACE	P12821	1306 aa		13.83	□□□□□ -0.2
CALD1-223	ENST00000496024	SPATA31A3	Q5VYP0	1347 aa		13.83	□□□□□ -0.2
CALD1-223	ENST00000496024	LRP6	O75581	1613 aa		13.82	□□□□□ -0.2
CALD1-223	ENST00000496024	ADAMTS2	O95450	1211 aa		13.82	□□□□□ -0.2
CALD1-223	ENST00000496024	SBNO2	Q9Y2G9	1366 aa		13.82	□□□□□ -0.2
CALD1-223	ENST00000496024	PLEKHG3	A1L390	1219 aa		13.81	□□□□□ -0.2
CALD1-223	ENST00000496024	TESK2	Q96S53	571 aa		13.81	□□□□□ -0.2
CALD1-223	ENST00000496024	TNS3	Q68CZ2	1445 aa		13.81	□□□□□ -0.2
CALD1-223	ENST00000496024	TMC1	Q8TDI8	760 aa		13.8	□□□□□ -0.2
CALD1-223	ENST00000496024	SBNO1	A3KN83	1393 aa		13.8	□□□□□ -0.2
CALD1-223	ENST00000496024	HAP1	P54257	671 aa	Predicted RBP	13.79	□□□□□ -0.2
CALD1-223	ENST00000496024	CABLES1	Q8TDN4	633 aa		13.79	□□□□□ -0.2
CALD1-223	ENST00000496024	TRPM3	Q9HCF6	1732 aa	Predicted RBP	13.78	□□□□□ -0.2
CALD1-223	ENST00000496024	NUTM2G	Q5VZR2	741 aa		13.78	□□□□□ -0.2
CALD1-223	ENST00000496024	C8orf37	Q96NL8	207 aa		13.78	□□□□□ -0.2
CALD1-223	ENST00000496024	POLR3A	O14802	1390 aa	Predicted RBP	13.78	□□□□□ -0.2
CALD1-223	ENST00000496024	ATAD2	Q6PL18	1390 aa		13.78	□□□□□ -0.2
CALD1-223	ENST00000496024	ARHGEF10	O15013	1369 aa		13.77	□□□□□ -0.21
CALD1-223	ENST00000496024	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.77	□□□□□ -0.21
CALD1-223	ENST00000496024	RGS17	Q9UGC6	210 aa	Predicted RBP	13.77	□□□□□ -0.21
CALD1-223	ENST00000496024	HSPA5	P11021	654 aa	Known RBP	13.76	□□□□□ -0.21
CALD1-223	ENST00000496024	TMF1	P82094	1093 aa		13.76	□□□□□ -0.21
CALD1-223	ENST00000496024	NGLY1	Q96IV0	654 aa		13.76	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms