RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 IQSEC2Q5JU85 1478 aa17.63■□□□□ 0.41
VPS52-220ENST00000493674 DDX10Q13206 875 aaKnown RBP17.63■□□□□ 0.41
VPS52-220ENST00000493674 SLC26A8Q96RN1 970 aa17.62■□□□□ 0.41
VPS52-220ENST00000493674 STK26Q9P289 416 aa17.62■□□□□ 0.41
VPS52-220ENST00000493674 ROBO2Q9HCK4 1378 aa17.62■□□□□ 0.41
VPS52-220ENST00000493674 PLEKHH1Q9ULM0 1364 aa17.62■□□□□ 0.41
VPS52-220ENST00000493674 ITSN1Q15811 1721 aa17.61■□□□□ 0.41
VPS52-220ENST00000493674 RGPD8O14715 1765 aaPredicted RBP17.61■□□□□ 0.41
VPS52-220ENST00000493674 PRAM1Q96QH2 718 aa17.6■□□□□ 0.41
VPS52-220ENST00000493674 FMN2Q9NZ56 1722 aa17.6■□□□□ 0.41
VPS52-220ENST00000493674 AKAP12Q02952 1782 aa17.6■□□□□ 0.41
VPS52-220ENST00000493674 XIRP1Q702N8 1843 aaKnown RBP17.6■□□□□ 0.41
VPS52-220ENST00000493674 USP32Q8NFA0 1604 aa17.59■□□□□ 0.41
VPS52-220ENST00000493674 BCANQ96GW7 911 aa17.59■□□□□ 0.41
VPS52-220ENST00000493674 PUS7Q96PZ0 661 aaKnown RBP17.59■□□□□ 0.41
VPS52-220ENST00000493674 CDCA8Q53HL2 280 aa17.58■□□□□ 0.4
VPS52-220ENST00000493674 NKTRP30414 1462 aaKnown RBP17.57■□□□□ 0.4
VPS52-220ENST00000493674 CDC42BPGQ6DT37 1551 aa17.56■□□□□ 0.4
VPS52-220ENST00000493674 MON2Q7Z3U7 1717 aa17.55■□□□□ 0.4
VPS52-220ENST00000493674 EVC2Q86UK5 1308 aa17.54■□□□□ 0.4
VPS52-220ENST00000493674 WAPLQ7Z5K2 1190 aa17.54■□□□□ 0.4
VPS52-220ENST00000493674 POGKQ9P215 609 aa17.54■□□□□ 0.4
VPS52-220ENST00000493674 AMOTL2Q9Y2J4 779 aa17.54■□□□□ 0.4
VPS52-220ENST00000493674 ANKRD26Q9UPS8 1709 aa17.54■□□□□ 0.4
VPS52-220ENST00000493674 KIF20BQ96Q89 1820 aa17.52■□□□□ 0.4
VPS52-220ENST00000493674 MINK1Q8N4C8 1332 aaPredicted RBP17.51■□□□□ 0.39
VPS52-220ENST00000493674 ZNF335Q9H4Z2 1342 aaPredicted RBP17.51■□□□□ 0.39
VPS52-220ENST00000493674 ATP7BP35670 1465 aa17.51■□□□□ 0.39
VPS52-220ENST00000493674 NINLQ9Y2I6 1382 aa17.51■□□□□ 0.39
VPS52-220ENST00000493674 KCNA6P17658 529 aa17.5■□□□□ 0.39
VPS52-220ENST00000493674 SAFB2Q14151 953 aaKnown RBP eCLIP17.5■□□□□ 0.39
VPS52-220ENST00000493674 CERKQ8TCT0 537 aa17.5■□□□□ 0.39
VPS52-220ENST00000493674 ATAD2Q6PL18 1390 aa17.5■□□□□ 0.39
VPS52-220ENST00000493674 POLR3GLQ9BT43 218 aa17.49■□□□□ 0.39
VPS52-220ENST00000493674 CD163L1Q9NR16 1453 aa17.49■□□□□ 0.39
VPS52-220ENST00000493674 NRKQ7Z2Y5 1582 aa17.49■□□□□ 0.39
VPS52-220ENST00000493674 ADGRL3Q9HAR2 1447 aa17.47■□□□□ 0.39
VPS52-220ENST00000493674 PER1O15534 1290 aaPredicted RBP17.47■□□□□ 0.39
VPS52-220ENST00000493674 WASLO00401 505 aaPredicted RBP17.46■□□□□ 0.39
VPS52-220ENST00000493674 MIER1Q8N108 512 aa17.46■□□□□ 0.39
VPS52-220ENST00000493674 CDK19Q9BWU1 502 aa17.45■□□□□ 0.38
VPS52-220ENST00000493674 LRRC7Q96NW7 1537 aa17.45■□□□□ 0.38
VPS52-220ENST00000493674 CABP2Q9NPB3 220 aa17.44■□□□□ 0.38
VPS52-220ENST00000493674 ANKRD36BQ8N2N9 1353 aa17.43■□□□□ 0.38
VPS52-220ENST00000493674 NPC1L1Q9UHC9 1359 aa17.43■□□□□ 0.38
VPS52-220ENST00000493674 PANK3Q9H999 370 aa17.43■□□□□ 0.38
VPS52-220ENST00000493674 ANKARQ7Z5J8 1434 aa17.43■□□□□ 0.38
VPS52-220ENST00000493674 NCOA3Q9Y6Q9 1424 aa17.43■□□□□ 0.38
VPS52-220ENST00000493674 KTN1Q86UP2 1357 aaKnown RBP17.41■□□□□ 0.38
VPS52-220ENST00000493674 SRPK2P78362 688 aaKnown RBP17.41■□□□□ 0.38
VPS52-220ENST00000493674 FBXO41Q8TF61 875 aa17.41■□□□□ 0.38
VPS52-220ENST00000493674 PRR36Q9H6K5 1346 aa17.41■□□□□ 0.38
VPS52-220ENST00000493674 CPSF1Q10570 1443 aaKnown RBP17.4■□□□□ 0.38
VPS52-220ENST00000493674 A0A1W2PP64 1363 aa17.4■□□□□ 0.38
VPS52-220ENST00000493674 PARD3Q8TEW0 1356 aa17.4■□□□□ 0.38
VPS52-220ENST00000493674 PPIP5K1Q6PFW1 1433 aa17.39■□□□□ 0.38
VPS52-220ENST00000493674 KIF1AQ12756 1690 aa17.39■□□□□ 0.37
VPS52-220ENST00000493674 USP54Q70EL1 1684 aa17.39■□□□□ 0.37
VPS52-220ENST00000493674 ANP32CO43423 234 aa17.39■□□□□ 0.37
VPS52-220ENST00000493674 SLC12A5Q9H2X9 1139 aa17.39■□□□□ 0.37
VPS52-220ENST00000493674 PRKRIP1Q9H875 184 aaPredicted RBP17.39■□□□□ 0.37
VPS52-220ENST00000493674 DCCP43146 1447 aa17.38■□□□□ 0.37
VPS52-220ENST00000493674 CARD14Q9BXL6 1004 aa17.37■□□□□ 0.37
VPS52-220ENST00000493674 MARF1Q9Y4F3 1742 aaKnown RBP17.37■□□□□ 0.37
VPS52-220ENST00000493674 NSD3Q9BZ95 1437 aa17.37■□□□□ 0.37
VPS52-220ENST00000493674 AMER1Q5JTC6 1135 aaPredicted RBP17.36■□□□□ 0.37
VPS52-220ENST00000493674 NUDT16Q96DE0 195 aaKnown RBP17.36■□□□□ 0.37
VPS52-220ENST00000493674 CCER2I3L3R5 266 aa17.34■□□□□ 0.37
VPS52-220ENST00000493674 TMC1Q8TDI8 760 aa17.34■□□□□ 0.37
VPS52-220ENST00000493674 CCDC61Q9Y6R9 512 aa17.34■□□□□ 0.37
VPS52-220ENST00000493674 TMEM94Q12767 1356 aa17.33■□□□□ 0.36
VPS52-220ENST00000493674 EDC4Q6P2E9 1401 aaKnown RBP17.32■□□□□ 0.36
VPS52-220ENST00000493674 POLR3AO14802 1390 aaPredicted RBP17.32■□□□□ 0.36
VPS52-220ENST00000493674 NSD2O96028 1365 aa17.32■□□□□ 0.36
VPS52-220ENST00000493674 PLEKHG3A1L390 1219 aa17.32■□□□□ 0.36
VPS52-220ENST00000493674 PROSER2Q86WR7 435 aaPredicted RBP17.32■□□□□ 0.36
VPS52-220ENST00000493674 TERF2IPQ9NYB0 399 aa17.32■□□□□ 0.36
VPS52-220ENST00000493674 CABP1Q9NZU7 370 aa17.32■□□□□ 0.36
VPS52-220ENST00000493674 KNSTRNQ9Y448 316 aa17.32■□□□□ 0.36
VPS52-220ENST00000493674 MAP2P11137 1827 aaKnown RBP17.32■□□□□ 0.36
VPS52-220ENST00000493674 TRPM3Q9HCF6 1732 aaPredicted RBP17.32■□□□□ 0.36
VPS52-220ENST00000493674 RALBP1Q15311 655 aa17.31■□□□□ 0.36
VPS52-220ENST00000493674 PIK3C2AO00443 1686 aa17.31■□□□□ 0.36
VPS52-220ENST00000493674 SSH2Q76I76 1423 aa17.3■□□□□ 0.36
VPS52-220ENST00000493674 ILDR1Q86SU0 546 aaPredicted RBP17.29■□□□□ 0.36
VPS52-220ENST00000493674 USP6P35125 1406 aa17.29■□□□□ 0.36
VPS52-220ENST00000493674 MST1RQ04912 1400 aa17.29■□□□□ 0.36
VPS52-220ENST00000493674 TOM1O60784 492 aa17.27■□□□□ 0.36
VPS52-220ENST00000493674 HDGFL2Q7Z4V5 671 aaPredicted RBP17.27■□□□□ 0.36
VPS52-220ENST00000493674 RBM33Q96EV2 1170 aaKnown RBP17.27■□□□□ 0.36
VPS52-220ENST00000493674 C19orf44Q9H6X5 657 aa17.27■□□□□ 0.36
VPS52-220ENST00000493674 MSH6P52701 1360 aa17.27■□□□□ 0.35
VPS52-220ENST00000493674 CGNL1Q0VF96 1302 aa17.26■□□□□ 0.35
VPS52-220ENST00000493674 MYBBP1AQ9BQG0 1328 aaKnown RBP17.26■□□□□ 0.35
VPS52-220ENST00000493674 C1orf167Q5SNV9 1468 aa17.26■□□□□ 0.35
VPS52-220ENST00000493674 SHPRHQ149N8 1683 aa17.26■□□□□ 0.35
VPS52-220ENST00000493674 ALS2Q96Q42 1657 aa17.26■□□□□ 0.35
VPS52-220ENST00000493674 UBAP1LF5GYI3 381 aa17.25■□□□□ 0.35
VPS52-220ENST00000493674 ACEP12821 1306 aa17.24■□□□□ 0.35
VPS52-220ENST00000493674 CC2D1BQ5T0F9 858 aaKnown RBP17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms