RNA–Protein interactions for RNA: ENST00000490999.5

SCAMP3-208, Transcript of secretory carrier membrane protein 3, humanhuman

TSL 2

Gene SCAMP3, Length 1,011 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP3-208ENST00000490999 PXDNQ92626 1479 aa23.36■■□□□ 1.33
SCAMP3-208ENST00000490999 CDC42BPGQ6DT37 1551 aa23.35■■□□□ 1.33
SCAMP3-208ENST00000490999 HFM1A2PYH4 1435 aa23.34■■□□□ 1.33
SCAMP3-208ENST00000490999 BCL9LQ86UU0 1499 aa23.34■■□□□ 1.33
SCAMP3-208ENST00000490999 ZRANB1Q9UGI0 708 aa23.32■■□□□ 1.32
SCAMP3-208ENST00000490999 NAIPQ13075 1403 aa23.32■■□□□ 1.32
SCAMP3-208ENST00000490999 VGFO15240 615 aaPredicted RBP23.31■■□□□ 1.32
SCAMP3-208ENST00000490999 ESCO1Q5FWF5 840 aa23.31■■□□□ 1.32
SCAMP3-208ENST00000490999 NPHP3Q7Z494 1330 aa23.3■■□□□ 1.32
SCAMP3-208ENST00000490999 PPLO60437 1756 aa23.28■■□□□ 1.32
SCAMP3-208ENST00000490999 NUTM2FA1L443 756 aa23.28■■□□□ 1.32
SCAMP3-208ENST00000490999 FOXO3O43524 673 aa23.27■■□□□ 1.32
SCAMP3-208ENST00000490999 MARF1Q9Y4F3 1742 aaKnown RBP23.27■■□□□ 1.32
SCAMP3-208ENST00000490999 GLI3P10071 1580 aa23.24■■□□□ 1.31
SCAMP3-208ENST00000490999 RALGAPBQ86X10 1494 aa23.24■■□□□ 1.31
SCAMP3-208ENST00000490999 GJD4Q96KN9 370 aaPredicted RBP23.23■■□□□ 1.31
SCAMP3-208ENST00000490999 STK26Q9P289 416 aa23.22■■□□□ 1.31
SCAMP3-208ENST00000490999 RPGRIP1LQ68CZ1 1315 aa23.22■■□□□ 1.31
SCAMP3-208ENST00000490999 PLEKHH1Q9ULM0 1364 aa23.22■■□□□ 1.31
SCAMP3-208ENST00000490999 FOXD1Q16676 465 aa23.21■■□□□ 1.31
SCAMP3-208ENST00000490999 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.21■■□□□ 1.31
SCAMP3-208ENST00000490999 RRBP1Q9P2E9 1410 aaKnown RBP23.2■■□□□ 1.3
SCAMP3-208ENST00000490999 ADGRF5Q8IZF2 1346 aa23.2■■□□□ 1.3
SCAMP3-208ENST00000490999 WAPLQ7Z5K2 1190 aa23.2■■□□□ 1.3
SCAMP3-208ENST00000490999 SLIT2O94813 1529 aa23.19■■□□□ 1.3
SCAMP3-208ENST00000490999 SLC4A1APQ9BWU0 796 aaKnown RBP23.19■■□□□ 1.3
SCAMP3-208ENST00000490999 USP32Q8NFA0 1604 aa23.19■■□□□ 1.3
SCAMP3-208ENST00000490999 TECPR2O15040 1411 aa23.17■■□□□ 1.3
SCAMP3-208ENST00000490999 BLMP54132 1417 aaPredicted RBP23.17■■□□□ 1.3
SCAMP3-208ENST00000490999 LRPPRCP42704 1394 aaKnown RBP23.17■■□□□ 1.3
SCAMP3-208ENST00000490999 PLEKHG5O94827 1062 aa23.17■■□□□ 1.3
SCAMP3-208ENST00000490999 CCDC125Q86Z20 511 aa23.17■■□□□ 1.3
SCAMP3-208ENST00000490999 DEFB132Q7Z7B7 95 aa23.16■■□□□ 1.3
SCAMP3-208ENST00000490999 UNC5CLQ8IV45 518 aa23.16■■□□□ 1.3
SCAMP3-208ENST00000490999 FMN2Q9NZ56 1722 aa23.15■■□□□ 1.3
SCAMP3-208ENST00000490999 CCDC144AA2RUR9 1427 aa23.14■■□□□ 1.29
SCAMP3-208ENST00000490999 SPATA31A3Q5VYP0 1347 aa23.13■■□□□ 1.29
SCAMP3-208ENST00000490999 KIF1AQ12756 1690 aa23.13■■□□□ 1.29
SCAMP3-208ENST00000490999 TMEM132EQ6IEE7 984 aa23.13■■□□□ 1.29
SCAMP3-208ENST00000490999 KNDC1Q76NI1 1749 aa23.13■■□□□ 1.29
SCAMP3-208ENST00000490999 BRWD3Q6RI45 1802 aa23.12■■□□□ 1.29
SCAMP3-208ENST00000490999 RGL3Q3MIN7 710 aa23.11■■□□□ 1.29
SCAMP3-208ENST00000490999 TNS3Q68CZ2 1445 aa23.1■■□□□ 1.29
SCAMP3-208ENST00000490999 CABLES1Q8TDN4 633 aa23.1■■□□□ 1.29
SCAMP3-208ENST00000490999 PLCH1Q4KWH8 1693 aa23.09■■□□□ 1.29
SCAMP3-208ENST00000490999 PIK3C2GO75747 1445 aa23.09■■□□□ 1.29
SCAMP3-208ENST00000490999 SPATA31E1Q6ZUB1 1445 aa23.09■■□□□ 1.29
SCAMP3-208ENST00000490999 IFT172Q9UG01 1749 aa23.09■■□□□ 1.29
SCAMP3-208ENST00000490999 SEPT12Q8IYM1 358 aa23.09■■□□□ 1.29
SCAMP3-208ENST00000490999 HAP1P54257 671 aaPredicted RBP23.08■■□□□ 1.29
SCAMP3-208ENST00000490999 ABCC11Q96J66 1382 aa23.08■■□□□ 1.29
SCAMP3-208ENST00000490999 KRT28Q7Z3Y7 464 aa23.07■■□□□ 1.28
SCAMP3-208ENST00000490999 ABCA3Q99758 1704 aa23.07■■□□□ 1.28
SCAMP3-208ENST00000490999 YTHDC2Q9H6S0 1430 aaKnown RBP23.07■■□□□ 1.28
SCAMP3-208ENST00000490999 CCDC9Q9Y3X0 531 aaKnown RBP23.06■■□□□ 1.28
SCAMP3-208ENST00000490999 ANKRD30BQ9BXX2 1392 aa23.04■■□□□ 1.28
SCAMP3-208ENST00000490999 SF3B2Q13435 895 aaKnown RBP23.04■■□□□ 1.28
SCAMP3-208ENST00000490999 VPS72Q15906 364 aa23.03■■□□□ 1.28
SCAMP3-208ENST00000490999 LMOD2Q6P5Q4 547 aa23.03■■□□□ 1.28
SCAMP3-208ENST00000490999 LRP5O75197 1615 aa23.03■■□□□ 1.28
SCAMP3-208ENST00000490999 PHF8Q9UPP1 1060 aa23.02■■□□□ 1.28
SCAMP3-208ENST00000490999 A0A0G2JS52 829 aa23.01■■□□□ 1.27
SCAMP3-208ENST00000490999 PSDA5PKW4 1024 aaPredicted RBP23.01■■□□□ 1.27
SCAMP3-208ENST00000490999 MYT1Q01538 1121 aa23.01■■□□□ 1.27
SCAMP3-208ENST00000490999 NRXN1Q9ULB1 1477 aa23■■□□□ 1.27
SCAMP3-208ENST00000490999 NWD2Q9ULI1 1742 aa23■■□□□ 1.27
SCAMP3-208ENST00000490999 RGPD8O14715 1765 aaPredicted RBP23■■□□□ 1.27
SCAMP3-208ENST00000490999 SAFB2Q14151 953 aaKnown RBP eCLIP23■■□□□ 1.27
SCAMP3-208ENST00000490999 KRT27Q7Z3Y8 459 aa23■■□□□ 1.27
SCAMP3-208ENST00000490999 NRAPQ86VF7 1730 aa22.96■■□□□ 1.27
SCAMP3-208ENST00000490999 SBNO1A3KN83 1393 aa22.96■■□□□ 1.27
SCAMP3-208ENST00000490999 ARHGEF10O15013 1369 aa22.95■■□□□ 1.26
SCAMP3-208ENST00000490999 PSME1Q06323 249 aa22.95■■□□□ 1.26
SCAMP3-208ENST00000490999 FAM83GA6ND36 823 aa22.94■■□□□ 1.26
SCAMP3-208ENST00000490999 FAM98CQ17RN3 349 aaKnown RBP22.94■■□□□ 1.26
SCAMP3-208ENST00000490999 PRAM1Q96QH2 718 aa22.94■■□□□ 1.26
SCAMP3-208ENST00000490999 ONECUT3O60422 494 aaPredicted RBP22.93■■□□□ 1.26
SCAMP3-208ENST00000490999 PMFBP1Q8TBY8 1022 aa22.93■■□□□ 1.26
SCAMP3-208ENST00000490999 CFAP70Q5T0N1 1121 aa22.92■■□□□ 1.26
SCAMP3-208ENST00000490999 BAG6P46379 1132 aa22.91■■□□□ 1.26
SCAMP3-208ENST00000490999 FAM182BQ5T319 152 aa22.91■■□□□ 1.26
SCAMP3-208ENST00000490999 MPHOSPH9Q99550 1183 aa22.91■■□□□ 1.26
SCAMP3-208ENST00000490999 HRCP23327 699 aa22.9■■□□□ 1.26
SCAMP3-208ENST00000490999 BTG4Q9NY30 223 aa22.9■■□□□ 1.26
SCAMP3-208ENST00000490999 TRPM3Q9HCF6 1732 aaPredicted RBP22.89■■□□□ 1.26
SCAMP3-208ENST00000490999 C14orf93Q9H972 538 aaKnown RBP22.89■■□□□ 1.25
SCAMP3-208ENST00000490999 SIRT1Q96EB6 747 aa22.88■■□□□ 1.25
SCAMP3-208ENST00000490999 ANKARQ7Z5J8 1434 aa22.88■■□□□ 1.25
SCAMP3-208ENST00000490999 ADGRB2O60241 1585 aa22.88■■□□□ 1.25
SCAMP3-208ENST00000490999 DHX57Q6P158 1386 aaKnown RBP22.88■■□□□ 1.25
SCAMP3-208ENST00000490999 EN1Q05925 392 aaPredicted RBP22.87■■□□□ 1.25
SCAMP3-208ENST00000490999 HIRIP3Q9BW71 556 aaPredicted RBP22.86■■□□□ 1.25
SCAMP3-208ENST00000490999 COL14A1Q05707 1796 aaKnown RBP22.86■■□□□ 1.25
SCAMP3-208ENST00000490999 ALS2Q96Q42 1657 aa22.85■■□□□ 1.25
SCAMP3-208ENST00000490999 RGPD1P0DJD0 1748 aa22.85■■□□□ 1.25
SCAMP3-208ENST00000490999 DLC1Q96QB1 1528 aa22.84■■□□□ 1.25
SCAMP3-208ENST00000490999 R3HDM1Q15032 1099 aaKnown RBP22.84■■□□□ 1.25
SCAMP3-208ENST00000490999 POGKQ9P215 609 aa22.84■■□□□ 1.25
SCAMP3-208ENST00000490999 THSD7AQ9UPZ6 1657 aa22.83■■□□□ 1.24
SCAMP3-208ENST00000490999 PRR36Q9H6K5 1346 aa22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms