RNA–Protein interactions for RNA: ENST00000490831.1

COL27A1-206, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 3

Gene COL27A1, Length 666 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-206ENST00000490831 ILDR2Q71H61 639 aa22.18■■□□□ 1.14
COL27A1-206ENST00000490831 DLC1Q96QB1 1528 aa22.17■■□□□ 1.14
COL27A1-206ENST00000490831 KDM2AQ9Y2K7 1162 aa22.17■■□□□ 1.14
COL27A1-206ENST00000490831 TRIM26Q12899 539 aaPredicted RBP22.13■■□□□ 1.13
COL27A1-206ENST00000490831 SHPRHQ149N8 1683 aa22.12■■□□□ 1.13
COL27A1-206ENST00000490831 ORAI2Q96SN7 254 aa22.11■■□□□ 1.13
COL27A1-206ENST00000490831 SPATA31A6Q5VVP1 1343 aa22.1■■□□□ 1.13
COL27A1-206ENST00000490831 PHF23Q9BUL5 403 aaPredicted RBP22.1■■□□□ 1.13
COL27A1-206ENST00000490831 PRAM1Q96QH2 718 aa22.09■■□□□ 1.13
COL27A1-206ENST00000490831 FMN2Q9NZ56 1722 aa22.09■■□□□ 1.13
COL27A1-206ENST00000490831 KIAA1210Q9ULL0 1709 aa22.08■■□□□ 1.12
COL27A1-206ENST00000490831 SOS2Q07890 1332 aaPredicted RBP22.07■■□□□ 1.12
COL27A1-206ENST00000490831 DDX17Q92841 729 aaKnown RBP22.07■■□□□ 1.12
COL27A1-206ENST00000490831 LRRC59Q96AG4 307 aaKnown RBP22.07■■□□□ 1.12
COL27A1-206ENST00000490831 RGS17Q9UGC6 210 aaPredicted RBP22.06■■□□□ 1.12
COL27A1-206ENST00000490831 ADGRB2O60241 1585 aa22.05■■□□□ 1.12
COL27A1-206ENST00000490831 TRAK1Q9UPV9 953 aa22.05■■□□□ 1.12
COL27A1-206ENST00000490831 LRP6O75581 1613 aa22.05■■□□□ 1.12
COL27A1-206ENST00000490831 ESCO1Q5FWF5 840 aa22.04■■□□□ 1.12
COL27A1-206ENST00000490831 SIN3AQ96ST3 1273 aa22.03■■□□□ 1.12
COL27A1-206ENST00000490831 POGKQ9P215 609 aa22.03■■□□□ 1.12
COL27A1-206ENST00000490831 PNPLA6Q8IY17 1366 aa22.02■■□□□ 1.12
COL27A1-206ENST00000490831 NPHP3Q7Z494 1330 aa22.02■■□□□ 1.12
COL27A1-206ENST00000490831 L3MBTL2Q969R5 705 aa22.01■■□□□ 1.11
COL27A1-206ENST00000490831 SAFB2Q14151 953 aaKnown RBP eCLIP22■■□□□ 1.11
COL27A1-206ENST00000490831 PXDNQ92626 1479 aa22■■□□□ 1.11
COL27A1-206ENST00000490831 ARHGEF28Q8N1W1 1705 aaKnown RBP22■■□□□ 1.11
COL27A1-206ENST00000490831 NUTM2FA1L443 756 aa21.99■■□□□ 1.11
COL27A1-206ENST00000490831 ANKARQ7Z5J8 1434 aa21.98■■□□□ 1.11
COL27A1-206ENST00000490831 KIF1AQ12756 1690 aa21.98■■□□□ 1.11
COL27A1-206ENST00000490831 SOCS7O14512 581 aa21.98■■□□□ 1.11
COL27A1-206ENST00000490831 FOXO3O43524 673 aa21.96■■□□□ 1.11
COL27A1-206ENST00000490831 NBPF1Q3BBV0 1214 aa21.96■■□□□ 1.11
COL27A1-206ENST00000490831 USP32Q8NFA0 1604 aa21.95■■□□□ 1.1
COL27A1-206ENST00000490831 RGPD8O14715 1765 aaPredicted RBP21.94■■□□□ 1.1
COL27A1-206ENST00000490831 NEUROD1Q13562 356 aa21.94■■□□□ 1.1
COL27A1-206ENST00000490831 EIF3AQ14152 1382 aaKnown RBP21.94■■□□□ 1.1
COL27A1-206ENST00000490831 COL22A1Q8NFW1 1626 aaPredicted RBP21.94■■□□□ 1.1
COL27A1-206ENST00000490831 MINK1Q8N4C8 1332 aaPredicted RBP21.93■■□□□ 1.1
COL27A1-206ENST00000490831 PHF8Q9UPP1 1060 aa21.93■■□□□ 1.1
COL27A1-206ENST00000490831 TULP4Q9NRJ4 1543 aa21.92■■□□□ 1.1
COL27A1-206ENST00000490831 WASLO00401 505 aaPredicted RBP21.92■■□□□ 1.1
COL27A1-206ENST00000490831 POTEAQ6S8J7 498 aa21.92■■□□□ 1.1
COL27A1-206ENST00000490831 HIRIP3Q9BW71 556 aaPredicted RBP21.92■■□□□ 1.1
COL27A1-206ENST00000490831 NUTM2BA6NNL0 878 aaPredicted RBP21.91■■□□□ 1.1
COL27A1-206ENST00000490831 NUTM2EB1AL46 878 aaPredicted RBP21.91■■□□□ 1.1
COL27A1-206ENST00000490831 MEX3CQ5U5Q3 659 aaKnown RBP21.91■■□□□ 1.1
COL27A1-206ENST00000490831 NUTM2AQ8IVF1 878 aaPredicted RBP21.91■■□□□ 1.1
COL27A1-206ENST00000490831 TRPM1Q7Z4N2 1603 aa21.9■■□□□ 1.1
COL27A1-206ENST00000490831 PRR36Q9H6K5 1346 aa21.89■■□□□ 1.1
COL27A1-206ENST00000490831 XPCQ01831 940 aaPredicted RBP21.88■■□□□ 1.09
COL27A1-206ENST00000490831 SPATA31A3Q5VYP0 1347 aa21.87■■□□□ 1.09
COL27A1-206ENST00000490831 ZNF772Q68DY9 489 aaPredicted RBP21.87■■□□□ 1.09
COL27A1-206ENST00000490831 KRT28Q7Z3Y7 464 aa21.87■■□□□ 1.09
COL27A1-206ENST00000490831 SBNO1A3KN83 1393 aa21.85■■□□□ 1.09
COL27A1-206ENST00000490831 ATP7BP35670 1465 aa21.84■■□□□ 1.09
COL27A1-206ENST00000490831 PSME1Q06323 249 aa21.84■■□□□ 1.09
COL27A1-206ENST00000490831 CENPJQ9HC77 1338 aaPredicted RBP21.83■■□□□ 1.09
COL27A1-206ENST00000490831 TNS3Q68CZ2 1445 aa21.83■■□□□ 1.09
COL27A1-206ENST00000490831 NBPF8Q3BBV2 869 aa21.83■■□□□ 1.09
COL27A1-206ENST00000490831 GPRASP1Q5JY77 1395 aa21.83■■□□□ 1.08
COL27A1-206ENST00000490831 AFF2P51816 1311 aa21.82■■□□□ 1.08
COL27A1-206ENST00000490831 PMFBP1Q8TBY8 1022 aa21.82■■□□□ 1.08
COL27A1-206ENST00000490831 NUDT16Q96DE0 195 aaKnown RBP21.81■■□□□ 1.08
COL27A1-206ENST00000490831 CDK19Q9BWU1 502 aa21.81■■□□□ 1.08
COL27A1-206ENST00000490831 ROCK2O75116 1388 aaKnown RBP21.81■■□□□ 1.08
COL27A1-206ENST00000490831 TONSLQ96HA7 1378 aa21.81■■□□□ 1.08
COL27A1-206ENST00000490831 ITSN1Q15811 1721 aa21.8■■□□□ 1.08
COL27A1-206ENST00000490831 C8orf37Q96NL8 207 aa21.8■■□□□ 1.08
COL27A1-206ENST00000490831 ADAMTS2O95450 1211 aa21.79■■□□□ 1.08
COL27A1-206ENST00000490831 TRPM3Q9HCF6 1732 aaPredicted RBP21.79■■□□□ 1.08
COL27A1-206ENST00000490831 TOPAZ1Q8N9V7 1692 aa21.79■■□□□ 1.08
COL27A1-206ENST00000490831 QRICH2Q9H0J4 1663 aa21.78■■□□□ 1.08
COL27A1-206ENST00000490831 ARHGEF10O15013 1369 aa21.77■■□□□ 1.08
COL27A1-206ENST00000490831 FNBP4Q8N3X1 1017 aaPredicted RBP21.77■■□□□ 1.08
COL27A1-206ENST00000490831 NGLY1Q96IV0 654 aa21.76■■□□□ 1.07
COL27A1-206ENST00000490831 MARF1Q9Y4F3 1742 aaKnown RBP21.76■■□□□ 1.07
COL27A1-206ENST00000490831 CCDC61Q9Y6R9 512 aa21.76■■□□□ 1.07
COL27A1-206ENST00000490831 POLR3AO14802 1390 aaPredicted RBP21.75■■□□□ 1.07
COL27A1-206ENST00000490831 RALGAPBQ86X10 1494 aa21.75■■□□□ 1.07
COL27A1-206ENST00000490831 PLEKHG3A1L390 1219 aa21.74■■□□□ 1.07
COL27A1-206ENST00000490831 NGDNQ8NEJ9 315 aaKnown RBP21.74■■□□□ 1.07
COL27A1-206ENST00000490831 ALS2Q96Q42 1657 aa21.74■■□□□ 1.07
COL27A1-206ENST00000490831 CDK12Q9NYV4 1490 aaPredicted RBP21.72■■□□□ 1.07
COL27A1-206ENST00000490831 RXRBP28702 533 aa21.72■■□□□ 1.07
COL27A1-206ENST00000490831 ABCA3Q99758 1704 aa21.7■■□□□ 1.06
COL27A1-206ENST00000490831 QTRT2Q9H974 415 aaKnown RBP21.7■■□□□ 1.06
COL27A1-206ENST00000490831 CLSPNQ9HAW4 1339 aa21.7■■□□□ 1.06
COL27A1-206ENST00000490831 SRPK2P78362 688 aaKnown RBP21.69■■□□□ 1.06
COL27A1-206ENST00000490831 USP21Q9UK80 565 aa21.69■■□□□ 1.06
COL27A1-206ENST00000490831 ACEP12821 1306 aa21.69■■□□□ 1.06
COL27A1-206ENST00000490831 SBNO2Q9Y2G9 1366 aa21.69■■□□□ 1.06
COL27A1-206ENST00000490831 BCL9LQ86UU0 1499 aa21.69■■□□□ 1.06
COL27A1-206ENST00000490831 RBM6P78332 1123 aaKnown RBP21.68■■□□□ 1.06
COL27A1-206ENST00000490831 CARD11Q9BXL7 1154 aa21.68■■□□□ 1.06
COL27A1-206ENST00000490831 CABP2Q9NPB3 220 aa21.68■■□□□ 1.06
COL27A1-206ENST00000490831 EVC2Q86UK5 1308 aa21.68■■□□□ 1.06
COL27A1-206ENST00000490831 ATRNO75882 1429 aa21.68■■□□□ 1.06
COL27A1-206ENST00000490831 SLIT2O94813 1529 aa21.68■■□□□ 1.06
COL27A1-206ENST00000490831 PPIP5K1Q6PFW1 1433 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms