RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 ORAI2Q96SN7 254 aa26.39■■□□□ 1.82
COL9A3-214ENST00000490398 SIRT1Q96EB6 747 aa26.36■■□□□ 1.81
COL9A3-214ENST00000490398 NUTM2FA1L443 756 aa26.35■■□□□ 1.81
COL9A3-214ENST00000490398 SAFB2Q14151 953 aaKnown RBP eCLIP26.35■■□□□ 1.81
COL9A3-214ENST00000490398 CDC42BPGQ6DT37 1551 aa26.35■■□□□ 1.81
COL9A3-214ENST00000490398 PRAM1Q96QH2 718 aa26.35■■□□□ 1.81
COL9A3-214ENST00000490398 STAC3Q96MF2 364 aa26.34■■□□□ 1.81
COL9A3-214ENST00000490398 TRAK1Q9UPV9 953 aa26.34■■□□□ 1.81
COL9A3-214ENST00000490398 JCADQ9P266 1359 aa26.33■■□□□ 1.81
COL9A3-214ENST00000490398 NEUROD1Q13562 356 aa26.32■■□□□ 1.8
COL9A3-214ENST00000490398 L3MBTL2Q969R5 705 aa26.32■■□□□ 1.8
COL9A3-214ENST00000490398 NHSL1Q5SYE7 1610 aa26.32■■□□□ 1.8
COL9A3-214ENST00000490398 DLC1Q96QB1 1528 aa26.3■■□□□ 1.8
COL9A3-214ENST00000490398 NBPF1Q3BBV0 1214 aa26.28■■□□□ 1.8
COL9A3-214ENST00000490398 RGS17Q9UGC6 210 aaPredicted RBP26.28■■□□□ 1.8
COL9A3-214ENST00000490398 POGKQ9P215 609 aa26.27■■□□□ 1.8
COL9A3-214ENST00000490398 ESCO1Q5FWF5 840 aa26.26■■□□□ 1.79
COL9A3-214ENST00000490398 PHF23Q9BUL5 403 aaPredicted RBP26.26■■□□□ 1.79
COL9A3-214ENST00000490398 LRP6O75581 1613 aa26.25■■□□□ 1.79
COL9A3-214ENST00000490398 FMN2Q9NZ56 1722 aa26.24■■□□□ 1.79
COL9A3-214ENST00000490398 HIRIP3Q9BW71 556 aaPredicted RBP26.23■■□□□ 1.79
COL9A3-214ENST00000490398 MINK1Q8N4C8 1332 aaPredicted RBP26.22■■□□□ 1.79
COL9A3-214ENST00000490398 SOS2Q07890 1332 aaPredicted RBP26.21■■□□□ 1.79
COL9A3-214ENST00000490398 SHPRHQ149N8 1683 aa26.21■■□□□ 1.79
COL9A3-214ENST00000490398 XPCQ01831 940 aaPredicted RBP26.2■■□□□ 1.78
COL9A3-214ENST00000490398 LRRC59Q96AG4 307 aaKnown RBP26.2■■□□□ 1.78
COL9A3-214ENST00000490398 FOXO3O43524 673 aa26.19■■□□□ 1.78
COL9A3-214ENST00000490398 PNPLA6Q8IY17 1366 aa26.19■■□□□ 1.78
COL9A3-214ENST00000490398 SPATA31A6Q5VVP1 1343 aa26.18■■□□□ 1.78
COL9A3-214ENST00000490398 KIAA1210Q9ULL0 1709 aa26.17■■□□□ 1.78
COL9A3-214ENST00000490398 NUTM2BA6NNL0 878 aaPredicted RBP26.17■■□□□ 1.78
COL9A3-214ENST00000490398 NUTM2EB1AL46 878 aaPredicted RBP26.17■■□□□ 1.78
COL9A3-214ENST00000490398 NUTM2AQ8IVF1 878 aaPredicted RBP26.17■■□□□ 1.78
COL9A3-214ENST00000490398 ARHGEF28Q8N1W1 1705 aaKnown RBP26.17■■□□□ 1.78
COL9A3-214ENST00000490398 PXDNQ92626 1479 aa26.16■■□□□ 1.78
COL9A3-214ENST00000490398 ADGRB2O60241 1585 aa26.16■■□□□ 1.78
COL9A3-214ENST00000490398 USP32Q8NFA0 1604 aa26.14■■□□□ 1.78
COL9A3-214ENST00000490398 PRR36Q9H6K5 1346 aa26.14■■□□□ 1.77
COL9A3-214ENST00000490398 NBPF8Q3BBV2 869 aa26.13■■□□□ 1.77
COL9A3-214ENST00000490398 POTEAQ6S8J7 498 aa26.13■■□□□ 1.77
COL9A3-214ENST00000490398 NPHP3Q7Z494 1330 aa26.13■■□□□ 1.77
COL9A3-214ENST00000490398 RGPD8O14715 1765 aaPredicted RBP26.12■■□□□ 1.77
COL9A3-214ENST00000490398 WASLO00401 505 aaPredicted RBP26.11■■□□□ 1.77
COL9A3-214ENST00000490398 PHF8Q9UPP1 1060 aa26.11■■□□□ 1.77
COL9A3-214ENST00000490398 MEX3CQ5U5Q3 659 aaKnown RBP26.09■■□□□ 1.77
COL9A3-214ENST00000490398 PMFBP1Q8TBY8 1022 aa26.09■■□□□ 1.77
COL9A3-214ENST00000490398 PCGF6Q9BYE7 350 aa26.08■■□□□ 1.77
COL9A3-214ENST00000490398 ANKARQ7Z5J8 1434 aa26.07■■□□□ 1.76
COL9A3-214ENST00000490398 TRPM1Q7Z4N2 1603 aa26.06■■□□□ 1.76
COL9A3-214ENST00000490398 KRT28Q7Z3Y7 464 aa26.06■■□□□ 1.76
COL9A3-214ENST00000490398 KIF1AQ12756 1690 aa26.06■■□□□ 1.76
COL9A3-214ENST00000490398 TULP4Q9NRJ4 1543 aa26.05■■□□□ 1.76
COL9A3-214ENST00000490398 SOCS7O14512 581 aa26.04■■□□□ 1.76
COL9A3-214ENST00000490398 CDK19Q9BWU1 502 aa26.03■■□□□ 1.76
COL9A3-214ENST00000490398 ADAMTS2O95450 1211 aa26.02■■□□□ 1.76
COL9A3-214ENST00000490398 TONSLQ96HA7 1378 aa26.02■■□□□ 1.76
COL9A3-214ENST00000490398 SPATA31A3Q5VYP0 1347 aa26.01■■□□□ 1.75
COL9A3-214ENST00000490398 CENPJQ9HC77 1338 aaPredicted RBP26.01■■□□□ 1.75
COL9A3-214ENST00000490398 ATP7BP35670 1465 aa26■■□□□ 1.75
COL9A3-214ENST00000490398 ROCK2O75116 1388 aaKnown RBP26■■□□□ 1.75
COL9A3-214ENST00000490398 NUDT16Q96DE0 195 aaKnown RBP26■■□□□ 1.75
COL9A3-214ENST00000490398 COL22A1Q8NFW1 1626 aaPredicted RBP25.99■■□□□ 1.75
COL9A3-214ENST00000490398 C8orf37Q96NL8 207 aa25.99■■□□□ 1.75
COL9A3-214ENST00000490398 EIF3AQ14152 1382 aaKnown RBP25.97■■□□□ 1.75
COL9A3-214ENST00000490398 AFF2P51816 1311 aa25.97■■□□□ 1.75
COL9A3-214ENST00000490398 PSME1Q06323 249 aa25.97■■□□□ 1.75
COL9A3-214ENST00000490398 GPRASP1Q5JY77 1395 aa25.95■■□□□ 1.74
COL9A3-214ENST00000490398 PLEKHG5O94827 1062 aa25.94■■□□□ 1.74
COL9A3-214ENST00000490398 TNS3Q68CZ2 1445 aa25.94■■□□□ 1.74
COL9A3-214ENST00000490398 CABP2Q9NPB3 220 aa25.93■■□□□ 1.74
COL9A3-214ENST00000490398 SBNO1A3KN83 1393 aa25.93■■□□□ 1.74
COL9A3-214ENST00000490398 QRICH2Q9H0J4 1663 aa25.93■■□□□ 1.74
COL9A3-214ENST00000490398 ZNF772Q68DY9 489 aaPredicted RBP25.92■■□□□ 1.74
COL9A3-214ENST00000490398 CABLES1Q8TDN4 633 aa25.92■■□□□ 1.74
COL9A3-214ENST00000490398 NGDNQ8NEJ9 315 aaKnown RBP25.91■■□□□ 1.74
COL9A3-214ENST00000490398 LMOD2Q6P5Q4 547 aa25.9■■□□□ 1.74
COL9A3-214ENST00000490398 NGLY1Q96IV0 654 aa25.9■■□□□ 1.74
COL9A3-214ENST00000490398 RALGAPBQ86X10 1494 aa25.9■■□□□ 1.74
COL9A3-214ENST00000490398 TRPM3Q9HCF6 1732 aaPredicted RBP25.89■■□□□ 1.74
COL9A3-214ENST00000490398 SRPK2P78362 688 aaKnown RBP25.89■■□□□ 1.74
COL9A3-214ENST00000490398 TOPAZ1Q8N9V7 1692 aa25.88■■□□□ 1.73
COL9A3-214ENST00000490398 CARD11Q9BXL7 1154 aa25.88■■□□□ 1.73
COL9A3-214ENST00000490398 CCDC61Q9Y6R9 512 aa25.88■■□□□ 1.73
COL9A3-214ENST00000490398 ACEP12821 1306 aa25.86■■□□□ 1.73
COL9A3-214ENST00000490398 PLEKHG3A1L390 1219 aa25.85■■□□□ 1.73
COL9A3-214ENST00000490398 ITSN1Q15811 1721 aa25.84■■□□□ 1.73
COL9A3-214ENST00000490398 FNBP4Q8N3X1 1017 aaPredicted RBP25.84■■□□□ 1.73
COL9A3-214ENST00000490398 POLR3AO14802 1390 aaPredicted RBP25.83■■□□□ 1.73
COL9A3-214ENST00000490398 QTRT2Q9H974 415 aaKnown RBP25.83■■□□□ 1.73
COL9A3-214ENST00000490398 ARHGEF10O15013 1369 aa25.82■■□□□ 1.72
COL9A3-214ENST00000490398 PPIP5K1Q6PFW1 1433 aa25.82■■□□□ 1.72
COL9A3-214ENST00000490398 PAK3O75914 559 aaPredicted RBP25.82■■□□□ 1.72
COL9A3-214ENST00000490398 USP21Q9UK80 565 aa25.82■■□□□ 1.72
COL9A3-214ENST00000490398 ALS2Q96Q42 1657 aa25.82■■□□□ 1.72
COL9A3-214ENST00000490398 RXRBP28702 533 aa25.8■■□□□ 1.72
COL9A3-214ENST00000490398 EVC2Q86UK5 1308 aa25.8■■□□□ 1.72
COL9A3-214ENST00000490398 CABP1Q9NZU7 370 aa25.79■■□□□ 1.72
COL9A3-214ENST00000490398 BCL9LQ86UU0 1499 aa25.79■■□□□ 1.72
COL9A3-214ENST00000490398 ABCA3Q99758 1704 aa25.78■■□□□ 1.72
COL9A3-214ENST00000490398 MARF1Q9Y4F3 1742 aaKnown RBP25.77■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms