RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 TOPAZ1Q8N9V7 1692 aa15.89■□□□□ 0.13
C9orf3-220ENST00000489318 MIER1Q8N108 512 aa15.89■□□□□ 0.13
C9orf3-220ENST00000489318 EVC2Q86UK5 1308 aa15.89■□□□□ 0.13
C9orf3-220ENST00000489318 BCANQ96GW7 911 aa15.88■□□□□ 0.13
C9orf3-220ENST00000489318 SLC26A8Q96RN1 970 aa15.88■□□□□ 0.13
C9orf3-220ENST00000489318 NINLQ9Y2I6 1382 aa15.87■□□□□ 0.13
C9orf3-220ENST00000489318 NALCNQ8IZF0 1738 aa15.86■□□□□ 0.13
C9orf3-220ENST00000489318 POGKQ9P215 609 aa15.86■□□□□ 0.13
C9orf3-220ENST00000489318 ATAD2Q6PL18 1390 aa15.86■□□□□ 0.13
C9orf3-220ENST00000489318 CDC42BPGQ6DT37 1551 aa15.85■□□□□ 0.13
C9orf3-220ENST00000489318 POLR3GLQ9BT43 218 aa15.85■□□□□ 0.13
C9orf3-220ENST00000489318 NKTRP30414 1462 aaKnown RBP15.84■□□□□ 0.13
C9orf3-220ENST00000489318 ITSN1Q15811 1721 aa15.84■□□□□ 0.13
C9orf3-220ENST00000489318 FMN2Q9NZ56 1722 aa15.83■□□□□ 0.13
C9orf3-220ENST00000489318 PER1O15534 1290 aaPredicted RBP15.83■□□□□ 0.12
C9orf3-220ENST00000489318 ANP32CO43423 234 aa15.83■□□□□ 0.12
C9orf3-220ENST00000489318 AMOTL2Q9Y2J4 779 aa15.83■□□□□ 0.12
C9orf3-220ENST00000489318 KTN1Q86UP2 1357 aaKnown RBP15.83■□□□□ 0.12
C9orf3-220ENST00000489318 ATP7BP35670 1465 aa15.83■□□□□ 0.12
C9orf3-220ENST00000489318 STRCP1A6NGW2 1772 aa15.82■□□□□ 0.12
C9orf3-220ENST00000489318 WAPLQ7Z5K2 1190 aa15.82■□□□□ 0.12
C9orf3-220ENST00000489318 MINK1Q8N4C8 1332 aaPredicted RBP15.82■□□□□ 0.12
C9orf3-220ENST00000489318 AKAP12Q02952 1782 aa15.81■□□□□ 0.12
C9orf3-220ENST00000489318 SAFB2Q14151 953 aaKnown RBP eCLIP15.81■□□□□ 0.12
C9orf3-220ENST00000489318 MON2Q7Z3U7 1717 aa15.81■□□□□ 0.12
C9orf3-220ENST00000489318 NCKAP5LQ9HCH0 1330 aa15.81■□□□□ 0.12
C9orf3-220ENST00000489318 NPC1L1Q9UHC9 1359 aa15.81■□□□□ 0.12
C9orf3-220ENST00000489318 CD163L1Q9NR16 1453 aa15.8■□□□□ 0.12
C9orf3-220ENST00000489318 ANKRD36BQ8N2N9 1353 aa15.8■□□□□ 0.12
C9orf3-220ENST00000489318 PRKRIP1Q9H875 184 aaPredicted RBP15.8■□□□□ 0.12
C9orf3-220ENST00000489318 ANKRD26Q9UPS8 1709 aa15.8■□□□□ 0.12
C9orf3-220ENST00000489318 PARD3Q8TEW0 1356 aa15.79■□□□□ 0.12
C9orf3-220ENST00000489318 CCER2I3L3R5 266 aa15.79■□□□□ 0.12
C9orf3-220ENST00000489318 PANK3Q9H999 370 aa15.79■□□□□ 0.12
C9orf3-220ENST00000489318 WASLO00401 505 aaPredicted RBP15.78■□□□□ 0.12
C9orf3-220ENST00000489318 KCNA6P17658 529 aa15.78■□□□□ 0.12
C9orf3-220ENST00000489318 ADGRL3Q9HAR2 1447 aa15.77■□□□□ 0.12
C9orf3-220ENST00000489318 CDK19Q9BWU1 502 aa15.77■□□□□ 0.12
C9orf3-220ENST00000489318 CABP2Q9NPB3 220 aa15.77■□□□□ 0.12
C9orf3-220ENST00000489318 NRKQ7Z2Y5 1582 aa15.77■□□□□ 0.11
C9orf3-220ENST00000489318 KIF20BQ96Q89 1820 aa15.76■□□□□ 0.11
C9orf3-220ENST00000489318 HSPA2P54652 639 aa15.76■□□□□ 0.11
C9orf3-220ENST00000489318 ANKARQ7Z5J8 1434 aa15.76■□□□□ 0.11
C9orf3-220ENST00000489318 SRPK2P78362 688 aaKnown RBP15.75■□□□□ 0.11
C9orf3-220ENST00000489318 A0A1W2PP64 1363 aa15.75■□□□□ 0.11
C9orf3-220ENST00000489318 CPSF1Q10570 1443 aaKnown RBP15.74■□□□□ 0.11
C9orf3-220ENST00000489318 NSD3Q9BZ95 1437 aa15.74■□□□□ 0.11
C9orf3-220ENST00000489318 RGPD8O14715 1765 aaPredicted RBP15.74■□□□□ 0.11
C9orf3-220ENST00000489318 XIRP1Q702N8 1843 aaKnown RBP15.73■□□□□ 0.11
C9orf3-220ENST00000489318 AMER1Q5JTC6 1135 aaPredicted RBP15.73■□□□□ 0.11
C9orf3-220ENST00000489318 PPIP5K1Q6PFW1 1433 aa15.73■□□□□ 0.11
C9orf3-220ENST00000489318 NCOA3Q9Y6Q9 1424 aa15.73■□□□□ 0.11
C9orf3-220ENST00000489318 RALBP1Q15311 655 aa15.72■□□□□ 0.11
C9orf3-220ENST00000489318 SLC12A5Q9H2X9 1139 aa15.72■□□□□ 0.11
C9orf3-220ENST00000489318 NSD2O96028 1365 aa15.72■□□□□ 0.11
C9orf3-220ENST00000489318 PRR36Q9H6K5 1346 aa15.71■□□□□ 0.11
C9orf3-220ENST00000489318 CARD14Q9BXL6 1004 aa15.71■□□□□ 0.11
C9orf3-220ENST00000489318 KNSTRNQ9Y448 316 aa15.71■□□□□ 0.11
C9orf3-220ENST00000489318 DCCP43146 1447 aa15.69■□□□□ 0.1
C9orf3-220ENST00000489318 TMC1Q8TDI8 760 aa15.69■□□□□ 0.1
C9orf3-220ENST00000489318 MYBBP1AQ9BQG0 1328 aaKnown RBP15.68■□□□□ 0.1
C9orf3-220ENST00000489318 NUDT16Q96DE0 195 aaKnown RBP15.68■□□□□ 0.1
C9orf3-220ENST00000489318 TERF2IPQ9NYB0 399 aa15.68■□□□□ 0.1
C9orf3-220ENST00000489318 CCDC61Q9Y6R9 512 aa15.68■□□□□ 0.1
C9orf3-220ENST00000489318 USP54Q70EL1 1684 aa15.67■□□□□ 0.1
C9orf3-220ENST00000489318 EDC4Q6P2E9 1401 aaKnown RBP15.67■□□□□ 0.1
C9orf3-220ENST00000489318 POLR3AO14802 1390 aaPredicted RBP15.66■□□□□ 0.1
C9orf3-220ENST00000489318 BRD4O60885 1362 aaPredicted RBP15.66■□□□□ 0.1
C9orf3-220ENST00000489318 CABP1Q9NZU7 370 aa15.66■□□□□ 0.1
C9orf3-220ENST00000489318 KIF1AQ12756 1690 aa15.66■□□□□ 0.1
C9orf3-220ENST00000489318 PLEKHG3A1L390 1219 aa15.65■□□□□ 0.1
C9orf3-220ENST00000489318 CGNL1Q0VF96 1302 aa15.65■□□□□ 0.1
C9orf3-220ENST00000489318 HDGFL2Q7Z4V5 671 aaPredicted RBP15.64■□□□□ 0.09
C9orf3-220ENST00000489318 LRRC7Q96NW7 1537 aa15.63■□□□□ 0.09
C9orf3-220ENST00000489318 USP6P35125 1406 aa15.63■□□□□ 0.09
C9orf3-220ENST00000489318 SSH2Q76I76 1423 aa15.63■□□□□ 0.09
C9orf3-220ENST00000489318 CC2D1BQ5T0F9 858 aaKnown RBP15.63■□□□□ 0.09
C9orf3-220ENST00000489318 TMEM94Q12767 1356 aa15.62■□□□□ 0.09
C9orf3-220ENST00000489318 NLRP13Q86W25 1043 aa15.62■□□□□ 0.09
C9orf3-220ENST00000489318 MARF1Q9Y4F3 1742 aaKnown RBP15.6■□□□□ 0.09
C9orf3-220ENST00000489318 CCDC184Q52MB2 194 aa15.6■□□□□ 0.09
C9orf3-220ENST00000489318 DMRT2Q9Y5R5 561 aa15.6■□□□□ 0.09
C9orf3-220ENST00000489318 PIK3C2AO00443 1686 aa15.6■□□□□ 0.09
C9orf3-220ENST00000489318 PROSER2Q86WR7 435 aaPredicted RBP15.59■□□□□ 0.09
C9orf3-220ENST00000489318 ZNF692Q9BU19 519 aaPredicted RBP15.59■□□□□ 0.09
C9orf3-220ENST00000489318 MST1RQ04912 1400 aa15.59■□□□□ 0.09
C9orf3-220ENST00000489318 MRS2Q9HD23 443 aa15.58■□□□□ 0.08
C9orf3-220ENST00000489318 ACEP12821 1306 aa15.58■□□□□ 0.08
C9orf3-220ENST00000489318 SHPRHQ149N8 1683 aa15.57■□□□□ 0.08
C9orf3-220ENST00000489318 TRPM3Q9HCF6 1732 aaPredicted RBP15.57■□□□□ 0.08
C9orf3-220ENST00000489318 PPP2R1AP30153 589 aa15.57■□□□□ 0.08
C9orf3-220ENST00000489318 C19orf44Q9H6X5 657 aa15.57■□□□□ 0.08
C9orf3-220ENST00000489318 OVOS2A0A0J9YW53 1432 aa15.57■□□□□ 0.08
C9orf3-220ENST00000489318 OVOS2Q6IE36 1432 aa15.57■□□□□ 0.08
C9orf3-220ENST00000489318 C1orf167Q5SNV9 1468 aa15.57■□□□□ 0.08
C9orf3-220ENST00000489318 FYB1O15117 783 aa15.56■□□□□ 0.08
C9orf3-220ENST00000489318 ZNF335Q9H4Z2 1342 aaPredicted RBP15.56■□□□□ 0.08
C9orf3-220ENST00000489318 INSRP06213 1382 aa15.56■□□□□ 0.08
C9orf3-220ENST00000489318 LTBP4Q8N2S1 1624 aa15.56■□□□□ 0.08
C9orf3-220ENST00000489318 SMG6Q86US8 1419 aaKnown RBP15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms