RNA–Protein interactions for RNA: ENST00000488594.5

GGPS1-206, Transcript of geranylgeranyl diphosphate synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GGPS1, Length 1,396 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGPS1-206ENST00000488594 FNBP4Q8N3X1 1017 aaPredicted RBP28.59■■■□□ 2.17
GGPS1-206ENST00000488594 TRPC5Q9UL62 973 aaPredicted RBP28.59■■■□□ 2.17
GGPS1-206ENST00000488594 ESCO1Q5FWF5 840 aa28.57■■■□□ 2.16
GGPS1-206ENST00000488594 CCDC144AA2RUR9 1427 aa28.57■■■□□ 2.16
GGPS1-206ENST00000488594 COL22A1Q8NFW1 1626 aaPredicted RBP28.56■■■□□ 2.16
GGPS1-206ENST00000488594 ATAD2Q6PL18 1390 aa28.55■■■□□ 2.16
GGPS1-206ENST00000488594 LRPPRCP42704 1394 aaKnown RBP28.54■■■□□ 2.16
GGPS1-206ENST00000488594 ANKRD30BQ9BXX2 1392 aa28.54■■■□□ 2.16
GGPS1-206ENST00000488594 ADGRF5Q8IZF2 1346 aa28.54■■■□□ 2.16
GGPS1-206ENST00000488594 TECPR2O15040 1411 aa28.53■■■□□ 2.16
GGPS1-206ENST00000488594 FOXD1Q16676 465 aa28.53■■■□□ 2.16
GGPS1-206ENST00000488594 MYOM2P54296 1465 aa28.53■■■□□ 2.16
GGPS1-206ENST00000488594 PXDNQ92626 1479 aa28.5■■■□□ 2.15
GGPS1-206ENST00000488594 ATRNO75882 1429 aa28.5■■■□□ 2.15
GGPS1-206ENST00000488594 SPATA31E1Q6ZUB1 1445 aa28.5■■■□□ 2.15
GGPS1-206ENST00000488594 FOXO3O43524 673 aa28.5■■■□□ 2.15
GGPS1-206ENST00000488594 RGL3Q3MIN7 710 aa28.5■■■□□ 2.15
GGPS1-206ENST00000488594 ABCC11Q96J66 1382 aa28.49■■■□□ 2.15
GGPS1-206ENST00000488594 STK26Q9P289 416 aa28.49■■■□□ 2.15
GGPS1-206ENST00000488594 WAPLQ7Z5K2 1190 aa28.47■■■□□ 2.15
GGPS1-206ENST00000488594 MPHOSPH9Q99550 1183 aa28.46■■■□□ 2.15
GGPS1-206ENST00000488594 PIK3C2GO75747 1445 aa28.44■■■□□ 2.14
GGPS1-206ENST00000488594 XPCQ01831 940 aaPredicted RBP28.44■■■□□ 2.14
GGPS1-206ENST00000488594 BCL9LQ86UU0 1499 aa28.43■■■□□ 2.14
GGPS1-206ENST00000488594 NUTM2FA1L443 756 aa28.41■■■□□ 2.14
GGPS1-206ENST00000488594 TMEM132EQ6IEE7 984 aa28.41■■■□□ 2.14
GGPS1-206ENST00000488594 KNDC1Q76NI1 1749 aa28.4■■■□□ 2.14
GGPS1-206ENST00000488594 IFT172Q9UG01 1749 aa28.4■■■□□ 2.14
GGPS1-206ENST00000488594 SIRT1Q96EB6 747 aa28.39■■■□□ 2.14
GGPS1-206ENST00000488594 ACIN1Q9UKV3 1341 aaKnown RBP28.39■■■□□ 2.14
GGPS1-206ENST00000488594 PLEKHH1Q9ULM0 1364 aa28.39■■■□□ 2.14
GGPS1-206ENST00000488594 YTHDC2Q9H6S0 1430 aaKnown RBP28.39■■■□□ 2.14
GGPS1-206ENST00000488594 CCDC125Q86Z20 511 aa28.37■■■□□ 2.13
GGPS1-206ENST00000488594 GJD4Q96KN9 370 aaPredicted RBP28.37■■■□□ 2.13
GGPS1-206ENST00000488594 SPATA31A3Q5VYP0 1347 aa28.37■■■□□ 2.13
GGPS1-206ENST00000488594 MARF1Q9Y4F3 1742 aaKnown RBP28.36■■■□□ 2.13
GGPS1-206ENST00000488594 KIF1AQ12756 1690 aa28.35■■■□□ 2.13
GGPS1-206ENST00000488594 FMN2Q9NZ56 1722 aa28.34■■■□□ 2.13
GGPS1-206ENST00000488594 C14orf93Q9H972 538 aaKnown RBP28.33■■■□□ 2.13
GGPS1-206ENST00000488594 KRT28Q7Z3Y7 464 aa28.32■■■□□ 2.12
GGPS1-206ENST00000488594 UNC5CLQ8IV45 518 aa28.32■■■□□ 2.12
GGPS1-206ENST00000488594 SLIT2O94813 1529 aa28.3■■■□□ 2.12
GGPS1-206ENST00000488594 ZRANB1Q9UGI0 708 aa28.3■■■□□ 2.12
GGPS1-206ENST00000488594 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.3■■■□□ 2.12
GGPS1-206ENST00000488594 DHX57Q6P158 1386 aaKnown RBP28.3■■■□□ 2.12
GGPS1-206ENST00000488594 PSME1Q06323 249 aa28.29■■■□□ 2.12
GGPS1-206ENST00000488594 PHF8Q9UPP1 1060 aa28.28■■■□□ 2.12
GGPS1-206ENST00000488594 NRXN1Q9ULB1 1477 aa28.28■■■□□ 2.12
GGPS1-206ENST00000488594 RALGAPBQ86X10 1494 aa28.26■■■□□ 2.11
GGPS1-206ENST00000488594 TNS3Q68CZ2 1445 aa28.26■■■□□ 2.11
GGPS1-206ENST00000488594 HAP1P54257 671 aaPredicted RBP28.25■■■□□ 2.11
GGPS1-206ENST00000488594 CFAP70Q5T0N1 1121 aa28.24■■■□□ 2.11
GGPS1-206ENST00000488594 USP32Q8NFA0 1604 aa28.24■■■□□ 2.11
GGPS1-206ENST00000488594 SBNO1A3KN83 1393 aa28.23■■■□□ 2.11
GGPS1-206ENST00000488594 EP400Q96L91 3159 aa28.22■■■□□ 2.11
GGPS1-206ENST00000488594 GLI3P10071 1580 aa28.22■■■□□ 2.11
GGPS1-206ENST00000488594 PRAM1Q96QH2 718 aa28.22■■■□□ 2.11
GGPS1-206ENST00000488594 ARHGEF10O15013 1369 aa28.2■■■□□ 2.11
GGPS1-206ENST00000488594 BLMP54132 1417 aaPredicted RBP28.19■■■□□ 2.1
GGPS1-206ENST00000488594 DLC1Q96QB1 1528 aa28.18■■■□□ 2.1
GGPS1-206ENST00000488594 SRCAPQ6ZRS2 3230 aa28.18■■■□□ 2.1
GGPS1-206ENST00000488594 VPS72Q15906 364 aa28.18■■■□□ 2.1
GGPS1-206ENST00000488594 ANKARQ7Z5J8 1434 aa28.18■■■□□ 2.1
GGPS1-206ENST00000488594 POGKQ9P215 609 aa28.17■■■□□ 2.1
GGPS1-206ENST00000488594 SAFB2Q14151 953 aaKnown RBP eCLIP28.16■■■□□ 2.1
GGPS1-206ENST00000488594 CABLES1Q8TDN4 633 aa28.16■■■□□ 2.1
GGPS1-206ENST00000488594 LMOD2Q6P5Q4 547 aa28.15■■■□□ 2.1
GGPS1-206ENST00000488594 SEPT12Q8IYM1 358 aa28.14■■■□□ 2.1
GGPS1-206ENST00000488594 RGPD8O14715 1765 aaPredicted RBP28.13■■■□□ 2.09
GGPS1-206ENST00000488594 ONECUT3O60422 494 aaPredicted RBP28.12■■■□□ 2.09
GGPS1-206ENST00000488594 CCDC9Q9Y3X0 531 aaKnown RBP28.11■■■□□ 2.09
GGPS1-206ENST00000488594 NWD2Q9ULI1 1742 aa28.11■■■□□ 2.09
GGPS1-206ENST00000488594 ADGRB2O60241 1585 aa28.11■■■□□ 2.09
GGPS1-206ENST00000488594 SF3B2Q13435 895 aaKnown RBP28.11■■■□□ 2.09
GGPS1-206ENST00000488594 EIF3AQ14152 1382 aaKnown RBP28.1■■■□□ 2.09
GGPS1-206ENST00000488594 PLEKHG5O94827 1062 aa28.1■■■□□ 2.09
GGPS1-206ENST00000488594 PMFBP1Q8TBY8 1022 aa28.1■■■□□ 2.09
GGPS1-206ENST00000488594 ADGRB1O14514 1584 aa28.08■■■□□ 2.09
GGPS1-206ENST00000488594 PLCH1Q4KWH8 1693 aa28.08■■■□□ 2.09
GGPS1-206ENST00000488594 FAM83GA6ND36 823 aa28.07■■■□□ 2.08
GGPS1-206ENST00000488594 ABCA3Q99758 1704 aa28.07■■■□□ 2.08
GGPS1-206ENST00000488594 GPRASP1Q5JY77 1395 aa28.07■■■□□ 2.08
GGPS1-206ENST00000488594 RAB3GAP2Q9H2M9 1393 aa28.07■■■□□ 2.08
GGPS1-206ENST00000488594 KRT27Q7Z3Y8 459 aa28.06■■■□□ 2.08
GGPS1-206ENST00000488594 TRAK1Q9UPV9 953 aa28.06■■■□□ 2.08
GGPS1-206ENST00000488594 BRWD3Q6RI45 1802 aa28.04■■■□□ 2.08
GGPS1-206ENST00000488594 STAC3Q96MF2 364 aa28.04■■■□□ 2.08
GGPS1-206ENST00000488594 DEFB132Q7Z7B7 95 aa28.03■■■□□ 2.08
GGPS1-206ENST00000488594 HIRIP3Q9BW71 556 aaPredicted RBP28.02■■■□□ 2.08
GGPS1-206ENST00000488594 MINK1Q8N4C8 1332 aaPredicted RBP28.01■■■□□ 2.07
GGPS1-206ENST00000488594 TULP4Q9NRJ4 1543 aa28■■■□□ 2.07
GGPS1-206ENST00000488594 WASLO00401 505 aaPredicted RBP27.99■■■□□ 2.07
GGPS1-206ENST00000488594 BTG4Q9NY30 223 aa27.99■■■□□ 2.07
GGPS1-206ENST00000488594 TRPM3Q9HCF6 1732 aaPredicted RBP27.99■■■□□ 2.07
GGPS1-206ENST00000488594 A0A0G2JS52 829 aa27.99■■■□□ 2.07
GGPS1-206ENST00000488594 MYT1Q01538 1121 aa27.99■■■□□ 2.07
GGPS1-206ENST00000488594 DCAF11Q8TEB1 546 aa27.99■■■□□ 2.07
GGPS1-206ENST00000488594 PRR36Q9H6K5 1346 aa27.98■■■□□ 2.07
GGPS1-206ENST00000488594 KDM2AQ9Y2K7 1162 aa27.98■■■□□ 2.07
GGPS1-206ENST00000488594 ALS2Q96Q42 1657 aa27.96■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms