RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 CDC42BPGQ6DT37 1551 aa20.23■□□□□ 0.83
SYNE1-226ENST00000488376 ORAI2Q96SN7 254 aa20.23■□□□□ 0.83
SYNE1-226ENST00000488376 SAFB2Q14151 953 aaKnown RBP eCLIP20.22■□□□□ 0.83
SYNE1-226ENST00000488376 PRAM1Q96QH2 718 aa20.22■□□□□ 0.83
SYNE1-226ENST00000488376 NUTM2FA1L443 756 aa20.21■□□□□ 0.83
SYNE1-226ENST00000488376 NEUROD1Q13562 356 aa20.21■□□□□ 0.83
SYNE1-226ENST00000488376 TRAK1Q9UPV9 953 aa20.2■□□□□ 0.82
SYNE1-226ENST00000488376 L3MBTL2Q969R5 705 aa20.19■□□□□ 0.82
SYNE1-226ENST00000488376 SIRT1Q96EB6 747 aa20.19■□□□□ 0.82
SYNE1-226ENST00000488376 STAC3Q96MF2 364 aa20.19■□□□□ 0.82
SYNE1-226ENST00000488376 NHSL1Q5SYE7 1610 aa20.19■□□□□ 0.82
SYNE1-226ENST00000488376 DLC1Q96QB1 1528 aa20.18■□□□□ 0.82
SYNE1-226ENST00000488376 JCADQ9P266 1359 aa20.18■□□□□ 0.82
SYNE1-226ENST00000488376 NBPF1Q3BBV0 1214 aa20.16■□□□□ 0.82
SYNE1-226ENST00000488376 FMN2Q9NZ56 1722 aa20.14■□□□□ 0.81
SYNE1-226ENST00000488376 LRP6O75581 1613 aa20.14■□□□□ 0.81
SYNE1-226ENST00000488376 ESCO1Q5FWF5 840 aa20.14■□□□□ 0.81
SYNE1-226ENST00000488376 POGKQ9P215 609 aa20.14■□□□□ 0.81
SYNE1-226ENST00000488376 HIRIP3Q9BW71 556 aaPredicted RBP20.13■□□□□ 0.81
SYNE1-226ENST00000488376 RGS17Q9UGC6 210 aaPredicted RBP20.12■□□□□ 0.81
SYNE1-226ENST00000488376 MINK1Q8N4C8 1332 aaPredicted RBP20.11■□□□□ 0.81
SYNE1-226ENST00000488376 PHF23Q9BUL5 403 aaPredicted RBP20.11■□□□□ 0.81
SYNE1-226ENST00000488376 ARHGEF28Q8N1W1 1705 aaKnown RBP20.1■□□□□ 0.81
SYNE1-226ENST00000488376 SHPRHQ149N8 1683 aa20.1■□□□□ 0.81
SYNE1-226ENST00000488376 XPCQ01831 940 aaPredicted RBP20.1■□□□□ 0.81
SYNE1-226ENST00000488376 ADGRB2O60241 1585 aa20.09■□□□□ 0.81
SYNE1-226ENST00000488376 KIAA1210Q9ULL0 1709 aa20.09■□□□□ 0.81
SYNE1-226ENST00000488376 SOS2Q07890 1332 aaPredicted RBP20.08■□□□□ 0.81
SYNE1-226ENST00000488376 FOXO3O43524 673 aa20.08■□□□□ 0.81
SYNE1-226ENST00000488376 PNPLA6Q8IY17 1366 aa20.08■□□□□ 0.8
SYNE1-226ENST00000488376 PXDNQ92626 1479 aa20.07■□□□□ 0.8
SYNE1-226ENST00000488376 USP32Q8NFA0 1604 aa20.07■□□□□ 0.8
SYNE1-226ENST00000488376 SPATA31A6Q5VVP1 1343 aa20.06■□□□□ 0.8
SYNE1-226ENST00000488376 NUTM2BA6NNL0 878 aaPredicted RBP20.06■□□□□ 0.8
SYNE1-226ENST00000488376 NUTM2EB1AL46 878 aaPredicted RBP20.06■□□□□ 0.8
SYNE1-226ENST00000488376 NUTM2AQ8IVF1 878 aaPredicted RBP20.06■□□□□ 0.8
SYNE1-226ENST00000488376 LRRC59Q96AG4 307 aaKnown RBP20.06■□□□□ 0.8
SYNE1-226ENST00000488376 PRR36Q9H6K5 1346 aa20.05■□□□□ 0.8
SYNE1-226ENST00000488376 NBPF8Q3BBV2 869 aa20.05■□□□□ 0.8
SYNE1-226ENST00000488376 PCGF6Q9BYE7 350 aa20.05■□□□□ 0.8
SYNE1-226ENST00000488376 RGPD8O14715 1765 aaPredicted RBP20.04■□□□□ 0.8
SYNE1-226ENST00000488376 NPHP3Q7Z494 1330 aa20.03■□□□□ 0.8
SYNE1-226ENST00000488376 TRPM1Q7Z4N2 1603 aa20.03■□□□□ 0.8
SYNE1-226ENST00000488376 WASLO00401 505 aaPredicted RBP20.01■□□□□ 0.79
SYNE1-226ENST00000488376 POTEAQ6S8J7 498 aa20.01■□□□□ 0.79
SYNE1-226ENST00000488376 PHF8Q9UPP1 1060 aa20.01■□□□□ 0.79
SYNE1-226ENST00000488376 ANKARQ7Z5J8 1434 aa20.01■□□□□ 0.79
SYNE1-226ENST00000488376 PMFBP1Q8TBY8 1022 aa20■□□□□ 0.79
SYNE1-226ENST00000488376 TULP4Q9NRJ4 1543 aa20■□□□□ 0.79
SYNE1-226ENST00000488376 KIF1AQ12756 1690 aa20■□□□□ 0.79
SYNE1-226ENST00000488376 TONSLQ96HA7 1378 aa19.98■□□□□ 0.79
SYNE1-226ENST00000488376 MEX3CQ5U5Q3 659 aaKnown RBP19.98■□□□□ 0.79
SYNE1-226ENST00000488376 ROCK2O75116 1388 aaKnown RBP19.97■□□□□ 0.79
SYNE1-226ENST00000488376 KRT28Q7Z3Y7 464 aa19.97■□□□□ 0.79
SYNE1-226ENST00000488376 ATP7BP35670 1465 aa19.97■□□□□ 0.79
SYNE1-226ENST00000488376 CDK19Q9BWU1 502 aa19.96■□□□□ 0.79
SYNE1-226ENST00000488376 CENPJQ9HC77 1338 aaPredicted RBP19.96■□□□□ 0.79
SYNE1-226ENST00000488376 COL22A1Q8NFW1 1626 aaPredicted RBP19.94■□□□□ 0.78
SYNE1-226ENST00000488376 ADAMTS2O95450 1211 aa19.94■□□□□ 0.78
SYNE1-226ENST00000488376 SPATA31A3Q5VYP0 1347 aa19.94■□□□□ 0.78
SYNE1-226ENST00000488376 NUDT16Q96DE0 195 aaKnown RBP19.93■□□□□ 0.78
SYNE1-226ENST00000488376 EIF3AQ14152 1382 aaKnown RBP19.93■□□□□ 0.78
SYNE1-226ENST00000488376 QRICH2Q9H0J4 1663 aa19.92■□□□□ 0.78
SYNE1-226ENST00000488376 C8orf37Q96NL8 207 aa19.92■□□□□ 0.78
SYNE1-226ENST00000488376 GPRASP1Q5JY77 1395 aa19.92■□□□□ 0.78
SYNE1-226ENST00000488376 SOCS7O14512 581 aa19.91■□□□□ 0.78
SYNE1-226ENST00000488376 AFF2P51816 1311 aa19.91■□□□□ 0.78
SYNE1-226ENST00000488376 TNS3Q68CZ2 1445 aa19.91■□□□□ 0.78
SYNE1-226ENST00000488376 PSME1Q06323 249 aa19.9■□□□□ 0.78
SYNE1-226ENST00000488376 RALGAPBQ86X10 1494 aa19.9■□□□□ 0.78
SYNE1-226ENST00000488376 PLEKHG5O94827 1062 aa19.89■□□□□ 0.77
SYNE1-226ENST00000488376 TRPM3Q9HCF6 1732 aaPredicted RBP19.88■□□□□ 0.77
SYNE1-226ENST00000488376 TOPAZ1Q8N9V7 1692 aa19.88■□□□□ 0.77
SYNE1-226ENST00000488376 SBNO1A3KN83 1393 aa19.88■□□□□ 0.77
SYNE1-226ENST00000488376 CABP2Q9NPB3 220 aa19.88■□□□□ 0.77
SYNE1-226ENST00000488376 CABLES1Q8TDN4 633 aa19.87■□□□□ 0.77
SYNE1-226ENST00000488376 SRPK2P78362 688 aaKnown RBP19.86■□□□□ 0.77
SYNE1-226ENST00000488376 LMOD2Q6P5Q4 547 aa19.86■□□□□ 0.77
SYNE1-226ENST00000488376 NGDNQ8NEJ9 315 aaKnown RBP19.86■□□□□ 0.77
SYNE1-226ENST00000488376 CARD11Q9BXL7 1154 aa19.86■□□□□ 0.77
SYNE1-226ENST00000488376 ZNF772Q68DY9 489 aaPredicted RBP19.84■□□□□ 0.77
SYNE1-226ENST00000488376 NGLY1Q96IV0 654 aa19.84■□□□□ 0.77
SYNE1-226ENST00000488376 ITSN1Q15811 1721 aa19.84■□□□□ 0.77
SYNE1-226ENST00000488376 ACEP12821 1306 aa19.83■□□□□ 0.77
SYNE1-226ENST00000488376 CCDC61Q9Y6R9 512 aa19.83■□□□□ 0.77
SYNE1-226ENST00000488376 POLR3AO14802 1390 aaPredicted RBP19.83■□□□□ 0.76
SYNE1-226ENST00000488376 ALS2Q96Q42 1657 aa19.82■□□□□ 0.76
SYNE1-226ENST00000488376 PPIP5K1Q6PFW1 1433 aa19.82■□□□□ 0.76
SYNE1-226ENST00000488376 PLEKHG3A1L390 1219 aa19.81■□□□□ 0.76
SYNE1-226ENST00000488376 ARHGEF10O15013 1369 aa19.81■□□□□ 0.76
SYNE1-226ENST00000488376 ABCA3Q99758 1704 aa19.8■□□□□ 0.76
SYNE1-226ENST00000488376 PAK3O75914 559 aaPredicted RBP19.8■□□□□ 0.76
SYNE1-226ENST00000488376 EVC2Q86UK5 1308 aa19.79■□□□□ 0.76
SYNE1-226ENST00000488376 FNBP4Q8N3X1 1017 aaPredicted RBP19.79■□□□□ 0.76
SYNE1-226ENST00000488376 QTRT2Q9H974 415 aaKnown RBP19.78■□□□□ 0.76
SYNE1-226ENST00000488376 CABP1Q9NZU7 370 aa19.78■□□□□ 0.76
SYNE1-226ENST00000488376 BCL9LQ86UU0 1499 aa19.78■□□□□ 0.76
SYNE1-226ENST00000488376 MARF1Q9Y4F3 1742 aaKnown RBP19.77■□□□□ 0.76
SYNE1-226ENST00000488376 NUTM2GQ5VZR2 741 aa19.77■□□□□ 0.76
SYNE1-226ENST00000488376 USP21Q9UK80 565 aa19.77■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms