RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 DAXXQ9UER7 740 aaPredicted RBP10.46□□□□□ -0.73
SMC4-220ENST00000488017 GMPRP36959 345 aa10.45□□□□□ -0.74
SMC4-220ENST00000488017 MORN1Q5T089 497 aa10.45□□□□□ -0.74
SMC4-220ENST00000488017 SMYD5Q6GMV2 418 aa10.45□□□□□ -0.74
SMC4-220ENST00000488017 NXF1Q9UBU9 619 aaKnown RBP10.44□□□□□ -0.74
SMC4-220ENST00000488017 TESPA1A2RU30 521 aaPredicted RBP10.43□□□□□ -0.74
SMC4-220ENST00000488017 J3QL48 77 aa10.43□□□□□ -0.74
SMC4-220ENST00000488017 GNPATO15228 680 aa10.43□□□□□ -0.74
SMC4-220ENST00000488017 FMNL1O95466 1100 aaPredicted RBP10.43□□□□□ -0.74
SMC4-220ENST00000488017 NPAS3Q8IXF0 933 aa10.42□□□□□ -0.74
SMC4-220ENST00000488017 RDH13Q8NBN7 331 aa10.42□□□□□ -0.74
SMC4-220ENST00000488017 RBM26Q5T8P6 1007 aaKnown RBP10.41□□□□□ -0.74
SMC4-220ENST00000488017 HPS1Q92902 700 aa10.41□□□□□ -0.74
SMC4-220ENST00000488017 IRF7Q92985 503 aa10.41□□□□□ -0.74
SMC4-220ENST00000488017 MRGPRX2Q96LB1 330 aa10.41□□□□□ -0.74
SMC4-220ENST00000488017 SALL2Q9Y467 1007 aaPredicted RBP10.41□□□□□ -0.74
SMC4-220ENST00000488017 ATP6V1AP38606 617 aa10.4□□□□□ -0.74
SMC4-220ENST00000488017 FUT2Q10981 343 aa10.39□□□□□ -0.75
SMC4-220ENST00000488017 SULF1Q8IWU6 871 aa10.39□□□□□ -0.75
SMC4-220ENST00000488017 PRDM9Q9NQV7 894 aa10.39□□□□□ -0.75
SMC4-220ENST00000488017 GPR37O15354 613 aa10.38□□□□□ -0.75
SMC4-220ENST00000488017 FECHP22830 423 aa10.38□□□□□ -0.75
SMC4-220ENST00000488017 GCGRP47871 477 aa10.38□□□□□ -0.75
SMC4-220ENST00000488017 TRIM32Q13049 653 aa10.38□□□□□ -0.75
SMC4-220ENST00000488017 SLC27A5Q9Y2P5 690 aa10.38□□□□□ -0.75
SMC4-220ENST00000488017 DDX11L8A8MPP1 907 aa10.37□□□□□ -0.75
SMC4-220ENST00000488017 MSS51Q4VC12 460 aa10.37□□□□□ -0.75
SMC4-220ENST00000488017 BRICD5Q6PL45 260 aa10.37□□□□□ -0.75
SMC4-220ENST00000488017 REPIN1Q9BWE0 567 aaKnown RBP10.36□□□□□ -0.75
SMC4-220ENST00000488017 H3BM21 787 aa10.34□□□□□ -0.75
SMC4-220ENST00000488017 GRIPAP1Q4V328 841 aa10.32□□□□□ -0.76
SMC4-220ENST00000488017 ERBB4Q15303 1308 aa10.3□□□□□ -0.76
SMC4-220ENST00000488017 MMP16P51512 607 aa10.29□□□□□ -0.76
SMC4-220ENST00000488017 NLRP7Q8WX94 980 aa10.29□□□□□ -0.76
SMC4-220ENST00000488017 PHOX2BQ99453 314 aa10.29□□□□□ -0.76
SMC4-220ENST00000488017 VEGFBP49765 207 aa10.28□□□□□ -0.76
SMC4-220ENST00000488017 Q3C1V9 767 aa10.28□□□□□ -0.76
SMC4-220ENST00000488017 RNF19BQ6ZMZ0 732 aa10.28□□□□□ -0.76
SMC4-220ENST00000488017 RC3H1Q5TC82 1133 aaKnown RBP10.27□□□□□ -0.77
SMC4-220ENST00000488017 TRIM46Q7Z4K8 759 aa10.26□□□□□ -0.77
SMC4-220ENST00000488017 KCNMA1Q12791 1236 aa10.25□□□□□ -0.77
SMC4-220ENST00000488017 GPIHBP1Q8IV16 184 aa10.25□□□□□ -0.77
SMC4-220ENST00000488017 WNT7BP56706 349 aa10.24□□□□□ -0.77
SMC4-220ENST00000488017 BMP1P13497 986 aa10.23□□□□□ -0.77
SMC4-220ENST00000488017 SKOR1P84550 965 aa10.23□□□□□ -0.77
SMC4-220ENST00000488017 KCTD17Q8N5Z5 321 aa10.23□□□□□ -0.77
SMC4-220ENST00000488017 ALDH1A1P00352 501 aa10.22□□□□□ -0.77
SMC4-220ENST00000488017 CD46P15529 392 aa10.22□□□□□ -0.77
SMC4-220ENST00000488017 DXOO77932 396 aaKnown RBP10.21□□□□□ -0.77
SMC4-220ENST00000488017 GSK3AP49840 483 aa10.21□□□□□ -0.77
SMC4-220ENST00000488017 PLCB2Q00722 1185 aa10.21□□□□□ -0.77
SMC4-220ENST00000488017 CAPN5O15484 640 aaPredicted RBP10.2□□□□□ -0.78
SMC4-220ENST00000488017 USB1Q9BQ65 265 aaKnown RBP10.19□□□□□ -0.78
SMC4-220ENST00000488017 KDM4AO75164 1064 aa10.18□□□□□ -0.78
SMC4-220ENST00000488017 USP46P62068 366 aa10.18□□□□□ -0.78
SMC4-220ENST00000488017 VSIG8P0DPA2 414 aa10.17□□□□□ -0.78
SMC4-220ENST00000488017 MAP2K5Q13163 448 aa10.17□□□□□ -0.78
SMC4-220ENST00000488017 SIAH2O43255 324 aa10.16□□□□□ -0.78
SMC4-220ENST00000488017 CCDC24Q8N4L8 307 aa10.14□□□□□ -0.79
SMC4-220ENST00000488017 TMEM151AQ8N4L1 468 aa10.13□□□□□ -0.79
SMC4-220ENST00000488017 ZFP42Q96MM3 310 aa10.13□□□□□ -0.79
SMC4-220ENST00000488017 IRF6O14896 467 aa10.12□□□□□ -0.79
SMC4-220ENST00000488017 WASF2Q9Y6W5 498 aa10.12□□□□□ -0.79
SMC4-220ENST00000488017 HOXA2O43364 376 aa10.1□□□□□ -0.79
SMC4-220ENST00000488017 MINK1Q8N4C8 1332 aaPredicted RBP10.09□□□□□ -0.79
SMC4-220ENST00000488017 MDM2Q00987 491 aaPredicted RBP10.09□□□□□ -0.79
SMC4-220ENST00000488017 TULP1O00294 542 aaPredicted RBP10.08□□□□□ -0.8
SMC4-220ENST00000488017 GDF11O95390 407 aa10.08□□□□□ -0.8
SMC4-220ENST00000488017 RASSF7Q02833 373 aa10.08□□□□□ -0.8
SMC4-220ENST00000488017 EHBP1Q8NDI1 1231 aa10.08□□□□□ -0.8
SMC4-220ENST00000488017 JUNDP17535 347 aa10.07□□□□□ -0.8
SMC4-220ENST00000488017 HLA-CQ95604 372 aa10.07□□□□□ -0.8
SMC4-220ENST00000488017 CLCN1P35523 988 aa10.04□□□□□ -0.8
SMC4-220ENST00000488017 MRPL14Q6P1L8 145 aaKnown RBP10.04□□□□□ -0.8
SMC4-220ENST00000488017 GPCPD1Q9NPB8 672 aa10.04□□□□□ -0.8
SMC4-220ENST00000488017 RETREG3Q86VR2 466 aa10.03□□□□□ -0.8
SMC4-220ENST00000488017 FAM217BQ9NTX9 383 aaPredicted RBP10.03□□□□□ -0.8
SMC4-220ENST00000488017 RNF225M0QZC1 329 aaPredicted RBP10.02□□□□□ -0.81
SMC4-220ENST00000488017 SCARF1Q14162 830 aa10.02□□□□□ -0.81
SMC4-220ENST00000488017 CCDC102AQ96A19 550 aa10.02□□□□□ -0.81
SMC4-220ENST00000488017 GUCA2AQ02747 115 aa10.01□□□□□ -0.81
SMC4-220ENST00000488017 PTCRAQ6ISU1 281 aaPredicted RBP10.01□□□□□ -0.81
SMC4-220ENST00000488017 NUTM1Q86Y26 1132 aa10.01□□□□□ -0.81
SMC4-220ENST00000488017 NUDT12Q9BQG2 462 aa10.01□□□□□ -0.81
SMC4-220ENST00000488017 HAP1P54257 671 aaPredicted RBP10□□□□□ -0.81
SMC4-220ENST00000488017 KDM2AQ9Y2K7 1162 aa10□□□□□ -0.81
SMC4-220ENST00000488017 SOBPA7XYQ1 873 aa9.99□□□□□ -0.81
SMC4-220ENST00000488017 SYMPKQ92797 1274 aaKnown RBP9.99□□□□□ -0.81
SMC4-220ENST00000488017 PURBQ96QR8 312 aaKnown RBP9.99□□□□□ -0.81
SMC4-220ENST00000488017 SH3BP2P78314 561 aa9.98□□□□□ -0.81
SMC4-220ENST00000488017 ADAMTS8Q9UP79 889 aa9.97□□□□□ -0.81
SMC4-220ENST00000488017 FDX1P10109 184 aa9.96□□□□□ -0.82
SMC4-220ENST00000488017 MPNDQ8N594 471 aa9.96□□□□□ -0.82
SMC4-220ENST00000488017 KRI1Q8N9T8 703 aaKnown RBP9.96□□□□□ -0.82
SMC4-220ENST00000488017 PLEKHG3A1L390 1219 aa9.95□□□□□ -0.82
SMC4-220ENST00000488017 IGHA1P01876 353 aa9.95□□□□□ -0.82
SMC4-220ENST00000488017 CCNYL3P0C7X3 344 aa9.95□□□□□ -0.82
SMC4-220ENST00000488017 PPFIA3O75145 1194 aa9.94□□□□□ -0.82
SMC4-220ENST00000488017 MS4A1P11836 297 aa9.94□□□□□ -0.82
SMC4-220ENST00000488017 TIMP2P16035 220 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms