RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 PRR20AP86496 221 aa7.61□□□□□ -1.19
PTCD3-216ENST00000487043 RDH13Q8NBN7 331 aa7.61□□□□□ -1.19
PTCD3-216ENST00000487043 RSPH6AQ9H0K4 717 aa7.61□□□□□ -1.19
PTCD3-216ENST00000487043 MS4A1P11836 297 aa7.6□□□□□ -1.19
PTCD3-216ENST00000487043 SPSB2Q99619 263 aa7.6□□□□□ -1.19
PTCD3-216ENST00000487043 REPIN1Q9BWE0 567 aaKnown RBP7.6□□□□□ -1.19
PTCD3-216ENST00000487043 MYT1Q01538 1121 aa7.59□□□□□ -1.19
PTCD3-216ENST00000487043 ZNF775Q96BV0 537 aaPredicted RBP7.59□□□□□ -1.19
PTCD3-216ENST00000487043 PHOX2BQ99453 314 aa7.59□□□□□ -1.19
PTCD3-216ENST00000487043 PLA2G2CQ5R387 149 aa7.58□□□□□ -1.2
PTCD3-216ENST00000487043 DDX11L8A8MPP1 907 aa7.57□□□□□ -1.2
PTCD3-216ENST00000487043 GDF9O60383 454 aa7.57□□□□□ -1.2
PTCD3-216ENST00000487043 FOXC1Q12948 553 aa7.57□□□□□ -1.2
PTCD3-216ENST00000487043 GOPCQ9HD26 462 aa7.57□□□□□ -1.2
PTCD3-216ENST00000487043 CLCN1P35523 988 aa7.56□□□□□ -1.2
PTCD3-216ENST00000487043 MDM2Q00987 491 aaPredicted RBP7.56□□□□□ -1.2
PTCD3-216ENST00000487043 PCMTD1Q96MG8 357 aaPredicted RBP7.56□□□□□ -1.2
PTCD3-216ENST00000487043 FUT2Q10981 343 aa7.55□□□□□ -1.2
PTCD3-216ENST00000487043 FLIIQ13045 1269 aa7.55□□□□□ -1.2
PTCD3-216ENST00000487043 NLRP7Q8WX94 980 aa7.55□□□□□ -1.2
PTCD3-216ENST00000487043 GPCPD1Q9NPB8 672 aa7.55□□□□□ -1.2
PTCD3-216ENST00000487043 ATP6V1AP38606 617 aa7.54□□□□□ -1.2
PTCD3-216ENST00000487043 MORN1Q5T089 497 aa7.54□□□□□ -1.2
PTCD3-216ENST00000487043 FCF1Q9Y324 198 aaKnown RBP7.54□□□□□ -1.2
PTCD3-216ENST00000487043 FMNL1O95466 1100 aaPredicted RBP7.53□□□□□ -1.2
PTCD3-216ENST00000487043 SSTR3P32745 418 aaPredicted RBP7.53□□□□□ -1.2
PTCD3-216ENST00000487043 SULF1Q8IWU6 871 aa7.53□□□□□ -1.2
PTCD3-216ENST00000487043 ARID3AQ99856 593 aa7.53□□□□□ -1.2
PTCD3-216ENST00000487043 ATP1B4Q9UN42 357 aaPredicted RBP7.53□□□□□ -1.2
PTCD3-216ENST00000487043 POTECB2RU33 542 aa7.52□□□□□ -1.21
PTCD3-216ENST00000487043 ST8SIA5O15466 376 aa7.52□□□□□ -1.21
PTCD3-216ENST00000487043 CD2BP2O95400 341 aaKnown RBP7.52□□□□□ -1.21
PTCD3-216ENST00000487043 SLC27A5Q9Y2P5 690 aa7.52□□□□□ -1.21
PTCD3-216ENST00000487043 UBTFP17480 764 aaKnown RBP7.51□□□□□ -1.21
PTCD3-216ENST00000487043 RPIAP49247 311 aa7.51□□□□□ -1.21
PTCD3-216ENST00000487043 SH3D19Q5HYK7 790 aa7.51□□□□□ -1.21
PTCD3-216ENST00000487043 PKD2L1Q9P0L9 805 aa7.51□□□□□ -1.21
PTCD3-216ENST00000487043 ARID3CA6NKF2 412 aa7.5□□□□□ -1.21
PTCD3-216ENST00000487043 GCGRP47871 477 aa7.5□□□□□ -1.21
PTCD3-216ENST00000487043 BEGAINQ9BUH8 593 aa7.5□□□□□ -1.21
PTCD3-216ENST00000487043 AAASQ9NRG9 546 aa7.5□□□□□ -1.21
PTCD3-216ENST00000487043 ZBTB24O43167 697 aaPredicted RBP7.49□□□□□ -1.21
PTCD3-216ENST00000487043 CYP4X1Q8N118 509 aa7.49□□□□□ -1.21
PTCD3-216ENST00000487043 FAM160A2Q8N612 972 aaPredicted RBP7.49□□□□□ -1.21
PTCD3-216ENST00000487043 THAP11Q96EK4 314 aa7.49□□□□□ -1.21
PTCD3-216ENST00000487043 SKIV2LQ15477 1246 aaKnown RBP7.48□□□□□ -1.21
PTCD3-216ENST00000487043 GRIPAP1Q4V328 841 aa7.48□□□□□ -1.21
PTCD3-216ENST00000487043 C1orf115Q9H7X2 142 aa7.48□□□□□ -1.21
PTCD3-216ENST00000487043 PRDM9Q9NQV7 894 aa7.48□□□□□ -1.21
PTCD3-216ENST00000487043 FAM217BQ9NTX9 383 aaPredicted RBP7.48□□□□□ -1.21
PTCD3-216ENST00000487043 APBB1O00213 710 aa7.47□□□□□ -1.21
PTCD3-216ENST00000487043 PROCA1Q8NCQ7 364 aaPredicted RBP7.47□□□□□ -1.21
PTCD3-216ENST00000487043 CLUAP1Q96AJ1 413 aa7.47□□□□□ -1.21
PTCD3-216ENST00000487043 POLR3EQ9NVU0 708 aa7.47□□□□□ -1.21
PTCD3-216ENST00000487043 TTC24A2A3L6 582 aaPredicted RBP7.46□□□□□ -1.22
PTCD3-216ENST00000487043 BRICD5Q6PL45 260 aa7.46□□□□□ -1.22
PTCD3-216ENST00000487043 SALL2Q9Y467 1007 aaPredicted RBP7.46□□□□□ -1.22
PTCD3-216ENST00000487043 AXIN1O15169 862 aa7.45□□□□□ -1.22
PTCD3-216ENST00000487043 RNF19BQ6ZMZ0 732 aa7.45□□□□□ -1.22
PTCD3-216ENST00000487043 TOR4AQ9NXH8 423 aa7.45□□□□□ -1.22
PTCD3-216ENST00000487043 MCM6Q14566 821 aa7.44□□□□□ -1.22
PTCD3-216ENST00000487043 Q3C1V9 767 aa7.44□□□□□ -1.22
PTCD3-216ENST00000487043 MSS51Q4VC12 460 aa7.44□□□□□ -1.22
PTCD3-216ENST00000487043 A6NJR5 290 aa7.43□□□□□ -1.22
PTCD3-216ENST00000487043 DACH1Q9UI36 760 aa7.43□□□□□ -1.22
PTCD3-216ENST00000487043 C11orf95C9JLR9 678 aaPredicted RBP7.42□□□□□ -1.22
PTCD3-216ENST00000487043 TRAK2O60296 914 aa7.42□□□□□ -1.22
PTCD3-216ENST00000487043 AVPP01185 164 aa7.42□□□□□ -1.22
PTCD3-216ENST00000487043 CD46P15529 392 aa7.42□□□□□ -1.22
PTCD3-216ENST00000487043 CTC1Q2NKJ3 1217 aa7.42□□□□□ -1.22
PTCD3-216ENST00000487043 MYSM1Q5VVJ2 828 aa7.42□□□□□ -1.22
PTCD3-216ENST00000487043 CRIPAKQ8N1N5 446 aa7.42□□□□□ -1.22
PTCD3-216ENST00000487043 GMPR2Q9P2T1 348 aaKnown RBP7.41□□□□□ -1.22
PTCD3-216ENST00000487043 CLK2P49760 499 aaKnown RBP7.4□□□□□ -1.22
PTCD3-216ENST00000487043 TRIM32Q13049 653 aa7.4□□□□□ -1.22
PTCD3-216ENST00000487043 TREML4Q6UXN2 200 aa7.4□□□□□ -1.22
PTCD3-216ENST00000487043 TBC1D2Q9BYX2 928 aa7.4□□□□□ -1.22
PTCD3-216ENST00000487043 WNT7AO00755 349 aa7.39□□□□□ -1.23
PTCD3-216ENST00000487043 KDM4AO75164 1064 aa7.39□□□□□ -1.23
PTCD3-216ENST00000487043 CCDC24Q8N4L8 307 aa7.39□□□□□ -1.23
PTCD3-216ENST00000487043 SNIP1Q8TAD8 396 aaKnown RBP7.39□□□□□ -1.23
PTCD3-216ENST00000487043 USB1Q9BQ65 265 aaKnown RBP7.39□□□□□ -1.23
PTCD3-216ENST00000487043 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.39□□□□□ -1.23
PTCD3-216ENST00000487043 POM121Q96HA1 1249 aa7.38□□□□□ -1.23
PTCD3-216ENST00000487043 RAD21O60216 631 aa7.37□□□□□ -1.23
PTCD3-216ENST00000487043 SMCPP49901 116 aaPredicted RBP7.37□□□□□ -1.23
PTCD3-216ENST00000487043 MMP16P51512 607 aa7.37□□□□□ -1.23
PTCD3-216ENST00000487043 DIXDC1Q155Q3 683 aa7.37□□□□□ -1.23
PTCD3-216ENST00000487043 PROSER2Q86WR7 435 aaPredicted RBP7.37□□□□□ -1.23
PTCD3-216ENST00000487043 CCDC82Q8N4S0 544 aa7.37□□□□□ -1.23
PTCD3-216ENST00000487043 SMPD1P17405 629 aa7.36□□□□□ -1.23
PTCD3-216ENST00000487043 RFC5P40937 340 aa7.36□□□□□ -1.23
PTCD3-216ENST00000487043 MRGPRX2Q96LB1 330 aa7.36□□□□□ -1.23
PTCD3-216ENST00000487043 LIMD1Q9UGP4 676 aa7.36□□□□□ -1.23
PTCD3-216ENST00000487043 ZNF777Q9ULD5 760 aaPredicted RBP7.36□□□□□ -1.23
PTCD3-216ENST00000487043 WFS1O76024 890 aa7.35□□□□□ -1.23
PTCD3-216ENST00000487043 DXOO77932 396 aaKnown RBP7.35□□□□□ -1.23
PTCD3-216ENST00000487043 USP46P62068 366 aa7.35□□□□□ -1.23
PTCD3-216ENST00000487043 FBXO31Q5XUX0 539 aaPredicted RBP7.35□□□□□ -1.23
PTCD3-216ENST00000487043 RIC3Q7Z5B4 369 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms