RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 RUNDC1Q96C34 613 aa15.49■□□□□ 0.07
SHROOM3-208ENST00000486758 CARD14Q9BXL6 1004 aa15.49■□□□□ 0.07
SHROOM3-208ENST00000486758 GOLGA6L22H0YM25 854 aa15.49■□□□□ 0.07
SHROOM3-208ENST00000486758 XRCC6P12956 609 aaKnown RBP eCLIP15.49■□□□□ 0.07
SHROOM3-208ENST00000486758 MSNP26038 577 aaKnown RBP15.49■□□□□ 0.07
SHROOM3-208ENST00000486758 C22orf23Q9BZE7 217 aa15.49■□□□□ 0.07
SHROOM3-208ENST00000486758 EVC2Q86UK5 1308 aa15.49■□□□□ 0.07
SHROOM3-208ENST00000486758 KDM2BQ8NHM5 1336 aa15.49■□□□□ 0.07
SHROOM3-208ENST00000486758 KDM4FA0A1W2PPD8 638 aa15.49■□□□□ 0.07
SHROOM3-208ENST00000486758 HDGFL2Q7Z4V5 671 aaPredicted RBP15.48■□□□□ 0.07
SHROOM3-208ENST00000486758 ADGRL2O95490 1459 aa15.48■□□□□ 0.07
SHROOM3-208ENST00000486758 MCM4P33991 863 aa15.48■□□□□ 0.07
SHROOM3-208ENST00000486758 VGFO15240 615 aaPredicted RBP15.48■□□□□ 0.07
SHROOM3-208ENST00000486758 RIPK4P57078 832 aa15.48■□□□□ 0.07
SHROOM3-208ENST00000486758 FOXD4L5Q5VV16 416 aaPredicted RBP15.48■□□□□ 0.07
SHROOM3-208ENST00000486758 FOXD4L4Q8WXT5 416 aaPredicted RBP15.48■□□□□ 0.07
SHROOM3-208ENST00000486758 TSPOAP1O95153 1857 aa15.47■□□□□ 0.07
SHROOM3-208ENST00000486758 POLR1AO95602 1720 aaPredicted RBP15.47■□□□□ 0.07
SHROOM3-208ENST00000486758 RBM10P98175 930 aaKnown RBP15.47■□□□□ 0.07
SHROOM3-208ENST00000486758 ZMYND15Q9H091 742 aa15.47■□□□□ 0.07
SHROOM3-208ENST00000486758 NSD3Q9BZ95 1437 aa15.47■□□□□ 0.07
SHROOM3-208ENST00000486758 CHMP5Q9NZZ3 219 aa15.47■□□□□ 0.07
SHROOM3-208ENST00000486758 EXOSC9Q06265 439 aaKnown RBP15.46■□□□□ 0.07
SHROOM3-208ENST00000486758 DNTTIP2Q5QJE6 756 aaKnown RBP15.46■□□□□ 0.07
SHROOM3-208ENST00000486758 PRAM1Q96QH2 718 aa15.46■□□□□ 0.07
SHROOM3-208ENST00000486758 UHRF1BP1Q6BDS2 1440 aa15.45■□□□□ 0.06
SHROOM3-208ENST00000486758 ADCY10Q96PN6 1610 aa15.45■□□□□ 0.06
SHROOM3-208ENST00000486758 TERF2IPQ9NYB0 399 aa15.45■□□□□ 0.06
SHROOM3-208ENST00000486758 FAM13BQ9NYF5 915 aa15.45■□□□□ 0.06
SHROOM3-208ENST00000486758 ABCC10Q5T3U5 1492 aa15.45■□□□□ 0.06
SHROOM3-208ENST00000486758 THUMPD2Q9BTF0 503 aaKnown RBP15.45■□□□□ 0.06
SHROOM3-208ENST00000486758 LNPKQ9C0E8 428 aa15.45■□□□□ 0.06
SHROOM3-208ENST00000486758 PTMAP06454 111 aaKnown RBP15.44■□□□□ 0.06
SHROOM3-208ENST00000486758 ZKSCAN2Q63HK3 967 aa15.44■□□□□ 0.06
SHROOM3-208ENST00000486758 GBP4Q96PP9 640 aa15.44■□□□□ 0.06
SHROOM3-208ENST00000486758 C1orf115Q9H7X2 142 aa15.44■□□□□ 0.06
SHROOM3-208ENST00000486758 ABCC2Q92887 1545 aa15.43■□□□□ 0.06
SHROOM3-208ENST00000486758 DZIP1LQ8IYY4 767 aaKnown RBP15.42■□□□□ 0.06
SHROOM3-208ENST00000486758 GRPEL1Q9HAV7 217 aa15.42■□□□□ 0.06
SHROOM3-208ENST00000486758 NOS1P29475 1434 aa15.42■□□□□ 0.06
SHROOM3-208ENST00000486758 ESPNB1AK53 854 aa15.42■□□□□ 0.06
SHROOM3-208ENST00000486758 MRE11P49959 708 aa15.42■□□□□ 0.06
SHROOM3-208ENST00000486758 PLCB2Q00722 1185 aa15.42■□□□□ 0.06
SHROOM3-208ENST00000486758 DDX49Q9Y6V7 483 aaKnown RBP15.42■□□□□ 0.06
SHROOM3-208ENST00000486758 FBXO31Q5XUX0 539 aaPredicted RBP15.41■□□□□ 0.06
SHROOM3-208ENST00000486758 MAGI2Q86UL8 1455 aa15.41■□□□□ 0.06
SHROOM3-208ENST00000486758 FOXD4L6Q3SYB3 417 aaPredicted RBP15.41■□□□□ 0.06
SHROOM3-208ENST00000486758 FOXD4L3Q6VB84 417 aaPredicted RBP15.41■□□□□ 0.06
SHROOM3-208ENST00000486758 CABP1Q9NZU7 370 aa15.41■□□□□ 0.06
SHROOM3-208ENST00000486758 USP19O94966 1318 aa15.41■□□□□ 0.06
SHROOM3-208ENST00000486758 RLBP1P12271 317 aa15.4■□□□□ 0.06
SHROOM3-208ENST00000486758 ADGRL1O94910 1474 aa15.4■□□□□ 0.06
SHROOM3-208ENST00000486758 PLA2R1Q13018 1463 aa15.4■□□□□ 0.06
SHROOM3-208ENST00000486758 PLCH2O75038 1416 aa15.4■□□□□ 0.06
SHROOM3-208ENST00000486758 DDX11L8A8MPP1 907 aa15.4■□□□□ 0.06
SHROOM3-208ENST00000486758 DIAPH1O60610 1272 aaKnown RBP15.4■□□□□ 0.06
SHROOM3-208ENST00000486758 PCDHB15Q9Y5E8 787 aa15.4■□□□□ 0.06
SHROOM3-208ENST00000486758 FANCAO15360 1455 aa15.39■□□□□ 0.05
SHROOM3-208ENST00000486758 COL17A1Q9UMD9 1497 aaPredicted RBP15.39■□□□□ 0.05
SHROOM3-208ENST00000486758 WAPLQ7Z5K2 1190 aa15.39■□□□□ 0.05
SHROOM3-208ENST00000486758 ARHGEF12Q9NZN5 1544 aa15.39■□□□□ 0.05
SHROOM3-208ENST00000486758 SCAF11Q99590 1463 aaKnown RBP15.39■□□□□ 0.05
SHROOM3-208ENST00000486758 ANKRD45Q5TZF3 282 aa15.39■□□□□ 0.05
SHROOM3-208ENST00000486758 UHRF1BP1LA0JNW5 1464 aa15.39■□□□□ 0.05
SHROOM3-208ENST00000486758 SHANK2Q9UPX8 1470 aa15.39■□□□□ 0.05
SHROOM3-208ENST00000486758 IDI1Q13907 227 aa15.38■□□□□ 0.05
SHROOM3-208ENST00000486758 LMOD2Q6P5Q4 547 aa15.38■□□□□ 0.05
SHROOM3-208ENST00000486758 ADGBQ8N7X0 1667 aa15.38■□□□□ 0.05
SHROOM3-208ENST00000486758 MPNDQ8N594 471 aa15.37■□□□□ 0.05
SHROOM3-208ENST00000486758 ABCA8O94911 1581 aa15.37■□□□□ 0.05
SHROOM3-208ENST00000486758 SAMD9LQ8IVG5 1584 aa15.37■□□□□ 0.05
SHROOM3-208ENST00000486758 PRKAR2BP31323 418 aa15.37■□□□□ 0.05
SHROOM3-208ENST00000486758 NOL8Q76FK4 1167 aaKnown RBP15.37■□□□□ 0.05
SHROOM3-208ENST00000486758 RARSP54136 660 aaKnown RBP15.37■□□□□ 0.05
SHROOM3-208ENST00000486758 SLC4A10Q6U841 1118 aa15.37■□□□□ 0.05
SHROOM3-208ENST00000486758 NECTIN2Q92692 538 aa15.36■□□□□ 0.05
SHROOM3-208ENST00000486758 LTV1Q96GA3 475 aaPredicted RBP15.36■□□□□ 0.05
SHROOM3-208ENST00000486758 R3HCC1Q9Y3T6 440 aaKnown RBP15.36■□□□□ 0.05
SHROOM3-208ENST00000486758 PDE3AQ14432 1141 aa15.36■□□□□ 0.05
SHROOM3-208ENST00000486758 NOB1Q9ULX3 412 aaKnown RBP15.36■□□□□ 0.05
SHROOM3-208ENST00000486758 CDC42BPAQ5VT25 1732 aa15.36■□□□□ 0.05
SHROOM3-208ENST00000486758 CEBPAP49715 358 aaPredicted RBP15.36■□□□□ 0.05
SHROOM3-208ENST00000486758 A0A0U1RQG5 324 aaPredicted RBP15.35■□□□□ 0.05
SHROOM3-208ENST00000486758 IPO8O15397 1037 aaKnown RBP15.35■□□□□ 0.05
SHROOM3-208ENST00000486758 KIAA1211Q6ZU35 1233 aa15.35■□□□□ 0.05
SHROOM3-208ENST00000486758 TXNDC2Q86VQ3 553 aa15.35■□□□□ 0.05
SHROOM3-208ENST00000486758 TBC1D32Q96NH3 1257 aa15.34■□□□□ 0.05
SHROOM3-208ENST00000486758 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.34■□□□□ 0.05
SHROOM3-208ENST00000486758 TTC37Q6PGP7 1564 aa15.34■□□□□ 0.05
SHROOM3-208ENST00000486758 RRS1Q15050 365 aaKnown RBP15.34■□□□□ 0.05
SHROOM3-208ENST00000486758 CDK19Q9BWU1 502 aa15.33■□□□□ 0.05
SHROOM3-208ENST00000486758 NASPP49321 788 aaPredicted RBP15.33■□□□□ 0.04
SHROOM3-208ENST00000486758 STAC3Q96MF2 364 aa15.33■□□□□ 0.04
SHROOM3-208ENST00000486758 KDM5DQ9BY66 1539 aa15.33■□□□□ 0.04
SHROOM3-208ENST00000486758 DUOX2Q9NRD8 1548 aa15.33■□□□□ 0.04
SHROOM3-208ENST00000486758 UGGT1Q9NYU2 1555 aa15.33■□□□□ 0.04
SHROOM3-208ENST00000486758 BLMP54132 1417 aaPredicted RBP15.33■□□□□ 0.04
SHROOM3-208ENST00000486758 CALD1Q05682 793 aaKnown RBP15.33■□□□□ 0.04
SHROOM3-208ENST00000486758 DCTN1Q14203 1278 aa15.33■□□□□ 0.04
SHROOM3-208ENST00000486758 SSH1Q8WYL5 1049 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms