RNA–Protein interactions for RNA: ENST00000485746.1

PTCD1-205, Transcript of pentatricopeptide repeat domain 1, humanhuman

TSL 3

Gene PTCD1, Length 721 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-205ENST00000485746 LAMC1P11047 1609 aa17.99■□□□□ 0.47
PTCD1-205ENST00000485746 PCGF6Q9BYE7 350 aa17.99■□□□□ 0.47
PTCD1-205ENST00000485746 C1orf167Q5SNV9 1468 aa17.99■□□□□ 0.47
PTCD1-205ENST00000485746 ORAI2Q96SN7 254 aa17.98■□□□□ 0.47
PTCD1-205ENST00000485746 JCADQ9P266 1359 aa17.97■□□□□ 0.47
PTCD1-205ENST00000485746 DDX17Q92841 729 aaKnown RBP17.97■□□□□ 0.47
PTCD1-205ENST00000485746 NALCNQ8IZF0 1738 aa17.97■□□□□ 0.47
PTCD1-205ENST00000485746 PHLPP1O60346 1717 aa17.95■□□□□ 0.46
PTCD1-205ENST00000485746 LRRC59Q96AG4 307 aaKnown RBP17.95■□□□□ 0.46
PTCD1-205ENST00000485746 MINK1Q8N4C8 1332 aaPredicted RBP17.95■□□□□ 0.46
PTCD1-205ENST00000485746 HIRIP3Q9BW71 556 aaPredicted RBP17.94■□□□□ 0.46
PTCD1-205ENST00000485746 NBPF1Q3BBV0 1214 aa17.93■□□□□ 0.46
PTCD1-205ENST00000485746 MEX3CQ5U5Q3 659 aaKnown RBP17.93■□□□□ 0.46
PTCD1-205ENST00000485746 KNDC1Q76NI1 1749 aa17.92■□□□□ 0.46
PTCD1-205ENST00000485746 MED1Q15648 1581 aaPredicted RBP17.92■□□□□ 0.46
PTCD1-205ENST00000485746 TONSLQ96HA7 1378 aa17.91■□□□□ 0.46
PTCD1-205ENST00000485746 ADGRB1O14514 1584 aa17.91■□□□□ 0.46
PTCD1-205ENST00000485746 NUTM2BA6NNL0 878 aaPredicted RBP17.91■□□□□ 0.46
PTCD1-205ENST00000485746 NUTM2EB1AL46 878 aaPredicted RBP17.91■□□□□ 0.46
PTCD1-205ENST00000485746 NUTM2AQ8IVF1 878 aaPredicted RBP17.91■□□□□ 0.46
PTCD1-205ENST00000485746 DLC1Q96QB1 1528 aa17.91■□□□□ 0.46
PTCD1-205ENST00000485746 AHDC1Q5TGY3 1603 aaPredicted RBP17.9■□□□□ 0.46
PTCD1-205ENST00000485746 FOXO3O43524 673 aa17.9■□□□□ 0.46
PTCD1-205ENST00000485746 CDC42BPGQ6DT37 1551 aa17.9■□□□□ 0.46
PTCD1-205ENST00000485746 NPHP3Q7Z494 1330 aa17.9■□□□□ 0.46
PTCD1-205ENST00000485746 SPATA31A6Q5VVP1 1343 aa17.89■□□□□ 0.45
PTCD1-205ENST00000485746 XPCQ01831 940 aaPredicted RBP17.88■□□□□ 0.45
PTCD1-205ENST00000485746 WASLO00401 505 aaPredicted RBP17.87■□□□□ 0.45
PTCD1-205ENST00000485746 PHF8Q9UPP1 1060 aa17.87■□□□□ 0.45
PTCD1-205ENST00000485746 COL16A1Q07092 1604 aaPredicted RBP17.87■□□□□ 0.45
PTCD1-205ENST00000485746 ILDR2Q71H61 639 aa17.86■□□□□ 0.45
PTCD1-205ENST00000485746 ROCK2O75116 1388 aaKnown RBP17.86■□□□□ 0.45
PTCD1-205ENST00000485746 SOS2Q07890 1332 aaPredicted RBP17.85■□□□□ 0.45
PTCD1-205ENST00000485746 EIF3AQ14152 1382 aaKnown RBP17.85■□□□□ 0.45
PTCD1-205ENST00000485746 PSME1Q06323 249 aa17.84■□□□□ 0.45
PTCD1-205ENST00000485746 KRT28Q7Z3Y7 464 aa17.84■□□□□ 0.45
PTCD1-205ENST00000485746 PMFBP1Q8TBY8 1022 aa17.84■□□□□ 0.45
PTCD1-205ENST00000485746 CENPJQ9HC77 1338 aaPredicted RBP17.83■□□□□ 0.44
PTCD1-205ENST00000485746 NBPF8Q3BBV2 869 aa17.82■□□□□ 0.44
PTCD1-205ENST00000485746 CDK19Q9BWU1 502 aa17.82■□□□□ 0.44
PTCD1-205ENST00000485746 NHSL1Q5SYE7 1610 aa17.81■□□□□ 0.44
PTCD1-205ENST00000485746 LMOD2Q6P5Q4 547 aa17.81■□□□□ 0.44
PTCD1-205ENST00000485746 KIAA1210Q9ULL0 1709 aa17.81■□□□□ 0.44
PTCD1-205ENST00000485746 PNPLA6Q8IY17 1366 aa17.8■□□□□ 0.44
PTCD1-205ENST00000485746 NGDNQ8NEJ9 315 aaKnown RBP17.8■□□□□ 0.44
PTCD1-205ENST00000485746 FMN2Q9NZ56 1722 aa17.8■□□□□ 0.44
PTCD1-205ENST00000485746 ANKARQ7Z5J8 1434 aa17.8■□□□□ 0.44
PTCD1-205ENST00000485746 ADAMTS2O95450 1211 aa17.79■□□□□ 0.44
PTCD1-205ENST00000485746 SRPK2P78362 688 aaKnown RBP17.79■□□□□ 0.44
PTCD1-205ENST00000485746 CCER1Q8TC90 406 aaPredicted RBP17.79■□□□□ 0.44
PTCD1-205ENST00000485746 NUDT16Q96DE0 195 aaKnown RBP17.79■□□□□ 0.44
PTCD1-205ENST00000485746 CARD11Q9BXL7 1154 aa17.79■□□□□ 0.44
PTCD1-205ENST00000485746 PLEKHG5O94827 1062 aa17.78■□□□□ 0.44
PTCD1-205ENST00000485746 HAP1P54257 671 aaPredicted RBP17.77■□□□□ 0.44
PTCD1-205ENST00000485746 C8orf37Q96NL8 207 aa17.77■□□□□ 0.44
PTCD1-205ENST00000485746 RGS17Q9UGC6 210 aaPredicted RBP17.77■□□□□ 0.44
PTCD1-205ENST00000485746 GPRASP1Q5JY77 1395 aa17.77■□□□□ 0.43
PTCD1-205ENST00000485746 PRR36Q9H6K5 1346 aa17.76■□□□□ 0.43
PTCD1-205ENST00000485746 ADGRB2O60241 1585 aa17.76■□□□□ 0.43
PTCD1-205ENST00000485746 ZNF772Q68DY9 489 aaPredicted RBP17.76■□□□□ 0.43
PTCD1-205ENST00000485746 SHPRHQ149N8 1683 aa17.76■□□□□ 0.43
PTCD1-205ENST00000485746 NGLY1Q96IV0 654 aa17.75■□□□□ 0.43
PTCD1-205ENST00000485746 TULP4Q9NRJ4 1543 aa17.75■□□□□ 0.43
PTCD1-205ENST00000485746 LRP6O75581 1613 aa17.75■□□□□ 0.43
PTCD1-205ENST00000485746 ARHGEF28Q8N1W1 1705 aaKnown RBP17.75■□□□□ 0.43
PTCD1-205ENST00000485746 SPATA31A3Q5VYP0 1347 aa17.74■□□□□ 0.43
PTCD1-205ENST00000485746 PAK3O75914 559 aaPredicted RBP17.74■□□□□ 0.43
PTCD1-205ENST00000485746 CABP2Q9NPB3 220 aa17.74■□□□□ 0.43
PTCD1-205ENST00000485746 CCDC61Q9Y6R9 512 aa17.74■□□□□ 0.43
PTCD1-205ENST00000485746 PXDNQ92626 1479 aa17.74■□□□□ 0.43
PTCD1-205ENST00000485746 KIF1AQ12756 1690 aa17.74■□□□□ 0.43
PTCD1-205ENST00000485746 CLSPNQ9HAW4 1339 aa17.73■□□□□ 0.43
PTCD1-205ENST00000485746 POTEAQ6S8J7 498 aa17.73■□□□□ 0.43
PTCD1-205ENST00000485746 EVC2Q86UK5 1308 aa17.72■□□□□ 0.43
PTCD1-205ENST00000485746 TRPM1Q7Z4N2 1603 aa17.72■□□□□ 0.43
PTCD1-205ENST00000485746 AFF2P51816 1311 aa17.72■□□□□ 0.43
PTCD1-205ENST00000485746 SBNO1A3KN83 1393 aa17.7■□□□□ 0.42
PTCD1-205ENST00000485746 SOCS7O14512 581 aa17.69■□□□□ 0.42
PTCD1-205ENST00000485746 TIMELESSQ9UNS1 1208 aa17.69■□□□□ 0.42
PTCD1-205ENST00000485746 TNS3Q68CZ2 1445 aa17.69■□□□□ 0.42
PTCD1-205ENST00000485746 ARHGEF10O15013 1369 aa17.68■□□□□ 0.42
PTCD1-205ENST00000485746 RGPD8O14715 1765 aaPredicted RBP17.68■□□□□ 0.42
PTCD1-205ENST00000485746 ACEP12821 1306 aa17.68■□□□□ 0.42
PTCD1-205ENST00000485746 PLEKHG3A1L390 1219 aa17.67■□□□□ 0.42
PTCD1-205ENST00000485746 CABLES1Q8TDN4 633 aa17.67■□□□□ 0.42
PTCD1-205ENST00000485746 USP32Q8NFA0 1604 aa17.67■□□□□ 0.42
PTCD1-205ENST00000485746 ATP7BP35670 1465 aa17.67■□□□□ 0.42
PTCD1-205ENST00000485746 RALGAPBQ86X10 1494 aa17.67■□□□□ 0.42
PTCD1-205ENST00000485746 QTRT2Q9H974 415 aaKnown RBP17.66■□□□□ 0.42
PTCD1-205ENST00000485746 CABP1Q9NZU7 370 aa17.66■□□□□ 0.42
PTCD1-205ENST00000485746 USP21Q9UK80 565 aa17.66■□□□□ 0.42
PTCD1-205ENST00000485746 RXRBP28702 533 aa17.65■□□□□ 0.42
PTCD1-205ENST00000485746 PPIP5K1Q6PFW1 1433 aa17.64■□□□□ 0.42
PTCD1-205ENST00000485746 QRICH2Q9H0J4 1663 aa17.64■□□□□ 0.41
PTCD1-205ENST00000485746 NUTM2GQ5VZR2 741 aa17.62■□□□□ 0.41
PTCD1-205ENST00000485746 ST20-MTHFSA0A0A6YYL1 179 aa17.61■□□□□ 0.41
PTCD1-205ENST00000485746 FNBP4Q8N3X1 1017 aaPredicted RBP17.61■□□□□ 0.41
PTCD1-205ENST00000485746 ABTB2Q8N961 1025 aa17.61■□□□□ 0.41
PTCD1-205ENST00000485746 POLR3AO14802 1390 aaPredicted RBP17.61■□□□□ 0.41
PTCD1-205ENST00000485746 COL22A1Q8NFW1 1626 aaPredicted RBP17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms