RNA–Protein interactions for RNA: ENST00000485024.1

VPS8-223, Transcript of VPS8, CORVET complex subunit, human

TSL 2

Gene VPS8, Length 477 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS8-223	ENST00000485024	BMP1	P13497	986 aa		10.94	□□□□□ -0.66
VPS8-223	ENST00000485024	ATP6V1A	P38606	617 aa		10.94	□□□□□ -0.66
VPS8-223	ENST00000485024	RSPH4A	Q5TD94	716 aa		10.94	□□□□□ -0.66
VPS8-223	ENST00000485024	BBX	Q8WY36	941 aa	Predicted RBP	10.94	□□□□□ -0.66
VPS8-223	ENST00000485024	SALL2	Q9Y467	1007 aa	Predicted RBP	10.94	□□□□□ -0.66
VPS8-223	ENST00000485024	GSK3A	P49840	483 aa		10.93	□□□□□ -0.66
VPS8-223	ENST00000485024	RNF19B	Q6ZMZ0	732 aa		10.93	□□□□□ -0.66
VPS8-223	ENST00000485024	TRIM46	Q7Z4K8	759 aa		10.93	□□□□□ -0.66
VPS8-223	ENST00000485024	FECH	P22830	423 aa		10.92	□□□□□ -0.66
VPS8-223	ENST00000485024	KCTD17	Q8N5Z5	321 aa		10.92	□□□□□ -0.66
VPS8-223	ENST00000485024	NUTM2F	A1L443	756 aa		10.91	□□□□□ -0.66
VPS8-223	ENST00000485024	REPIN1	Q9BWE0	567 aa	Known RBP	10.91	□□□□□ -0.66
VPS8-223	ENST00000485024	METTL3	Q86U44	580 aa	Known RBP	10.9	□□□□□ -0.66
VPS8-223	ENST00000485024	RDH13	Q8NBN7	331 aa		10.9	□□□□□ -0.66
VPS8-223	ENST00000485024	OAT	P04181	439 aa		10.89	□□□□□ -0.67
VPS8-223	ENST00000485024	SKOR1	P84550	965 aa		10.89	□□□□□ -0.67
VPS8-223	ENST00000485024	RC3H1	Q5TC82	1133 aa	Known RBP	10.88	□□□□□ -0.67
VPS8-223	ENST00000485024	MMP16	P51512	607 aa		10.86	□□□□□ -0.67
VPS8-223	ENST00000485024	KCNMA1	Q12791	1236 aa		10.86	□□□□□ -0.67
VPS8-223	ENST00000485024	SPRYD3	Q8NCJ5	442 aa		10.86	□□□□□ -0.67
VPS8-223	ENST00000485024	FCHSD2	O94868	740 aa		10.85	□□□□□ -0.67
VPS8-223	ENST00000485024	DDX11L8	A8MPP1	907 aa		10.84	□□□□□ -0.67
VPS8-223	ENST00000485024	ALDH1A1	P00352	501 aa		10.84	□□□□□ -0.67
VPS8-223	ENST00000485024	GCGR	P47871	477 aa		10.84	□□□□□ -0.67
VPS8-223	ENST00000485024	DAXX	Q9UER7	740 aa	Predicted RBP	10.83	□□□□□ -0.68
VPS8-223	ENST00000485024	NLRP7	Q8WX94	980 aa		10.81	□□□□□ -0.68
VPS8-223	ENST00000485024	CAPN5	O15484	640 aa	Predicted RBP	10.8	□□□□□ -0.68
VPS8-223	ENST00000485024	WNT7B	P56706	349 aa		10.8	□□□□□ -0.68
VPS8-223	ENST00000485024	DXO	O77932	396 aa	Known RBP	10.79	□□□□□ -0.68
VPS8-223	ENST00000485024	VSIG8	P0DPA2	414 aa		10.78	□□□□□ -0.68
VPS8-223	ENST00000485024	ARHGEF1	Q92888	912 aa	Known RBP	10.77	□□□□□ -0.69
VPS8-223	ENST00000485024	ZFP42	Q96MM3	310 aa		10.77	□□□□□ -0.69
VPS8-223	ENST00000485024	SIAH2	O43255	324 aa		10.76	□□□□□ -0.69
VPS8-223	ENST00000485024	CCDC24	Q8N4L8	307 aa		10.74	□□□□□ -0.69
VPS8-223	ENST00000485024	TMEM151A	Q8N4L1	468 aa		10.73	□□□□□ -0.69
VPS8-223	ENST00000485024	RASSF7	Q02833	373 aa		10.72	□□□□□ -0.69
VPS8-223	ENST00000485024		Q3C1V9	767 aa		10.72	□□□□□ -0.69
VPS8-223	ENST00000485024	KCNV2	Q8TDN2	545 aa		10.72	□□□□□ -0.69
VPS8-223	ENST00000485024	USB1	Q9BQ65	265 aa	Known RBP	10.72	□□□□□ -0.69
VPS8-223	ENST00000485024	GDF11	O95390	407 aa		10.71	□□□□□ -0.69
VPS8-223	ENST00000485024	HIC1	Q14526	733 aa		10.71	□□□□□ -0.69
VPS8-223	ENST00000485024	SOBP	A7XYQ1	873 aa		10.7	□□□□□ -0.7
VPS8-223	ENST00000485024	WASF2	Q9Y6W5	498 aa		10.7	□□□□□ -0.7
VPS8-223	ENST00000485024	SULF1	Q8IWU6	871 aa		10.69	□□□□□ -0.7
VPS8-223	ENST00000485024	GRIPAP1	Q4V328	841 aa		10.68	□□□□□ -0.7
VPS8-223	ENST00000485024	PHOX2B	Q99453	314 aa		10.68	□□□□□ -0.7
VPS8-223	ENST00000485024	EHBP1	Q8NDI1	1231 aa		10.67	□□□□□ -0.7
VPS8-223	ENST00000485024	CFAP44	Q96MT7	982 aa		10.66	□□□□□ -0.7
VPS8-223	ENST00000485024	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	10.65	□□□□□ -0.7
VPS8-223	ENST00000485024	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	10.65	□□□□□ -0.7
VPS8-223	ENST00000485024	XP32	Q5T750	250 aa		10.63	□□□□□ -0.71
VPS8-223	ENST00000485024	PTCRA	Q6ISU1	281 aa	Predicted RBP	10.63	□□□□□ -0.71
VPS8-223	ENST00000485024	MRPL14	Q6P1L8	145 aa	Known RBP	10.63	□□□□□ -0.71
VPS8-223	ENST00000485024	HLA-C	Q95604	372 aa		10.63	□□□□□ -0.71
VPS8-223	ENST00000485024	PURB	Q96QR8	312 aa	Known RBP	10.63	□□□□□ -0.71
VPS8-223	ENST00000485024	GNPAT	O15228	680 aa		10.61	□□□□□ -0.71
VPS8-223	ENST00000485024	TLL2	Q9Y6L7	1015 aa		10.6	□□□□□ -0.71
VPS8-223	ENST00000485024	GPR37	O15354	613 aa		10.59	□□□□□ -0.71
VPS8-223	ENST00000485024	ADAMTS8	Q9UP79	889 aa		10.59	□□□□□ -0.71
VPS8-223	ENST00000485024	SEMA3E	O15041	775 aa		10.58	□□□□□ -0.72
VPS8-223	ENST00000485024	SH3BP2	P78314	561 aa		10.58	□□□□□ -0.72
VPS8-223	ENST00000485024	KRT76	Q01546	638 aa		10.58	□□□□□ -0.72
VPS8-223	ENST00000485024	RNF225	M0QZC1	329 aa	Predicted RBP	10.57	□□□□□ -0.72
VPS8-223	ENST00000485024	JUND	P17535	347 aa		10.57	□□□□□ -0.72
VPS8-223	ENST00000485024	SCARF1	Q14162	830 aa		10.57	□□□□□ -0.72
VPS8-223	ENST00000485024	GPAT2	Q6NUI2	795 aa		10.57	□□□□□ -0.72
VPS8-223	ENST00000485024	PPFIA3	O75145	1194 aa		10.56	□□□□□ -0.72
VPS8-223	ENST00000485024	CD46	P15529	392 aa		10.56	□□□□□ -0.72
VPS8-223	ENST00000485024	TIMP2	P16035	220 aa		10.56	□□□□□ -0.72
VPS8-223	ENST00000485024	NNT	Q13423	1086 aa		10.55	□□□□□ -0.72
VPS8-223	ENST00000485024	RBM26	Q5T8P6	1007 aa	Known RBP	10.55	□□□□□ -0.72
VPS8-223	ENST00000485024	KDM4A	O75164	1064 aa		10.54	□□□□□ -0.72
VPS8-223	ENST00000485024	NUDT12	Q9BQG2	462 aa		10.54	□□□□□ -0.72
VPS8-223	ENST00000485024	GUCA2A	Q02747	115 aa		10.52	□□□□□ -0.73
VPS8-223	ENST00000485024	SYMPK	Q92797	1274 aa	Known RBP	10.52	□□□□□ -0.73
VPS8-223	ENST00000485024	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	10.52	□□□□□ -0.73
VPS8-223	ENST00000485024	WDR4	P57081	412 aa	Known RBP	10.51	□□□□□ -0.73
VPS8-223	ENST00000485024	GPR161	Q8N6U8	529 aa	Known RBP	10.51	□□□□□ -0.73
VPS8-223	ENST00000485024	KLF16	Q9BXK1	252 aa	Predicted RBP	10.51	□□□□□ -0.73
VPS8-223	ENST00000485024	KRTAP4-8	Q9BYQ9	185 aa		10.51	□□□□□ -0.73
VPS8-223	ENST00000485024	ADH1C	P00326	375 aa		10.5	□□□□□ -0.73
VPS8-223	ENST00000485024	MAN1A2	O60476	641 aa		10.49	□□□□□ -0.73
VPS8-223	ENST00000485024	CNTNAP3B	Q96NU0	1288 aa		10.49	□□□□□ -0.73
VPS8-223	ENST00000485024	CNTNAP3	Q9BZ76	1288 aa		10.49	□□□□□ -0.73
VPS8-223	ENST00000485024	HOXA2	O43364	376 aa		10.48	□□□□□ -0.73
VPS8-223	ENST00000485024	IGHA1	P01876	353 aa		10.48	□□□□□ -0.73
VPS8-223	ENST00000485024	IRS1	P35568	1242 aa		10.47	□□□□□ -0.73
VPS8-223	ENST00000485024	LINC01559	Q495D7	138 aa		10.47	□□□□□ -0.73
VPS8-223	ENST00000485024	ZNF385C	Q66K41	422 aa	Predicted RBP	10.47	□□□□□ -0.73
VPS8-223	ENST00000485024	USP46	P62068	366 aa		10.45	□□□□□ -0.74
VPS8-223	ENST00000485024	C6orf118	Q5T5N4	469 aa		10.45	□□□□□ -0.74
VPS8-223	ENST00000485024	MPND	Q8N594	471 aa		10.45	□□□□□ -0.74
VPS8-223	ENST00000485024	PLEKHG3	A1L390	1219 aa		10.43	□□□□□ -0.74
VPS8-223	ENST00000485024	BAP1	Q92560	729 aa		10.43	□□□□□ -0.74
VPS8-223	ENST00000485024	UNC93B1	Q9H1C4	597 aa		10.43	□□□□□ -0.74
VPS8-223	ENST00000485024	ZFAND3	Q9H8U3	227 aa		10.43	□□□□□ -0.74
VPS8-223	ENST00000485024	CCNYL3	P0C7X3	344 aa		10.42	□□□□□ -0.74
VPS8-223	ENST00000485024	RETREG3	Q86VR2	466 aa		10.42	□□□□□ -0.74
VPS8-223	ENST00000485024	SVOP	Q8N4V2	548 aa		10.41	□□□□□ -0.74
VPS8-223	ENST00000485024	WHAMM	Q8TF30	809 aa		10.41	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms