RNA–Protein interactions for RNA: ENST00000483009.1

CCDC28B-205, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-205ENST00000483009 COL16A1Q07092 1604 aaPredicted RBP22.75■■□□□ 1.23
CCDC28B-205ENST00000483009 DLC1Q96QB1 1528 aa22.72■■□□□ 1.23
CCDC28B-205ENST00000483009 PRAM1Q96QH2 718 aa22.72■■□□□ 1.23
CCDC28B-205ENST00000483009 SIN3AQ96ST3 1273 aa22.71■■□□□ 1.23
CCDC28B-205ENST00000483009 PHF23Q9BUL5 403 aaPredicted RBP22.71■■□□□ 1.23
CCDC28B-205ENST00000483009 ORAI2Q96SN7 254 aa22.7■■□□□ 1.22
CCDC28B-205ENST00000483009 POGKQ9P215 609 aa22.7■■□□□ 1.22
CCDC28B-205ENST00000483009 TRAK1Q9UPV9 953 aa22.7■■□□□ 1.22
CCDC28B-205ENST00000483009 SAFB2Q14151 953 aaKnown RBP eCLIP22.68■■□□□ 1.22
CCDC28B-205ENST00000483009 ILDR2Q71H61 639 aa22.68■■□□□ 1.22
CCDC28B-205ENST00000483009 DDX17Q92841 729 aaKnown RBP22.68■■□□□ 1.22
CCDC28B-205ENST00000483009 L3MBTL2Q969R5 705 aa22.67■■□□□ 1.22
CCDC28B-205ENST00000483009 NEUROD1Q13562 356 aa22.66■■□□□ 1.22
CCDC28B-205ENST00000483009 ESCO1Q5FWF5 840 aa22.66■■□□□ 1.22
CCDC28B-205ENST00000483009 NHSL1Q5SYE7 1610 aa22.66■■□□□ 1.22
CCDC28B-205ENST00000483009 SPATA31A6Q5VVP1 1343 aa22.65■■□□□ 1.22
CCDC28B-205ENST00000483009 NUTM2FA1L443 756 aa22.65■■□□□ 1.22
CCDC28B-205ENST00000483009 LRRC59Q96AG4 307 aaKnown RBP22.65■■□□□ 1.22
CCDC28B-205ENST00000483009 SOS2Q07890 1332 aaPredicted RBP22.62■■□□□ 1.21
CCDC28B-205ENST00000483009 NPHP3Q7Z494 1330 aa22.6■■□□□ 1.21
CCDC28B-205ENST00000483009 NBPF1Q3BBV0 1214 aa22.6■■□□□ 1.21
CCDC28B-205ENST00000483009 FMN2Q9NZ56 1722 aa22.6■■□□□ 1.21
CCDC28B-205ENST00000483009 KIAA1210Q9ULL0 1709 aa22.59■■□□□ 1.21
CCDC28B-205ENST00000483009 SHPRHQ149N8 1683 aa22.58■■□□□ 1.21
CCDC28B-205ENST00000483009 MINK1Q8N4C8 1332 aaPredicted RBP22.58■■□□□ 1.21
CCDC28B-205ENST00000483009 PNPLA6Q8IY17 1366 aa22.58■■□□□ 1.21
CCDC28B-205ENST00000483009 ADGRB2O60241 1585 aa22.58■■□□□ 1.2
CCDC28B-205ENST00000483009 LRP6O75581 1613 aa22.57■■□□□ 1.2
CCDC28B-205ENST00000483009 FOXO3O43524 673 aa22.57■■□□□ 1.2
CCDC28B-205ENST00000483009 HIRIP3Q9BW71 556 aaPredicted RBP22.57■■□□□ 1.2
CCDC28B-205ENST00000483009 RGS17Q9UGC6 210 aaPredicted RBP22.57■■□□□ 1.2
CCDC28B-205ENST00000483009 ANKARQ7Z5J8 1434 aa22.56■■□□□ 1.2
CCDC28B-205ENST00000483009 EIF3AQ14152 1382 aaKnown RBP22.54■■□□□ 1.2
CCDC28B-205ENST00000483009 MEX3CQ5U5Q3 659 aaKnown RBP22.54■■□□□ 1.2
CCDC28B-205ENST00000483009 PHF8Q9UPP1 1060 aa22.54■■□□□ 1.2
CCDC28B-205ENST00000483009 NUTM2BA6NNL0 878 aaPredicted RBP22.53■■□□□ 1.2
CCDC28B-205ENST00000483009 NUTM2EB1AL46 878 aaPredicted RBP22.53■■□□□ 1.2
CCDC28B-205ENST00000483009 WASLO00401 505 aaPredicted RBP22.53■■□□□ 1.2
CCDC28B-205ENST00000483009 NUTM2AQ8IVF1 878 aaPredicted RBP22.53■■□□□ 1.2
CCDC28B-205ENST00000483009 PXDNQ92626 1479 aa22.53■■□□□ 1.2
CCDC28B-205ENST00000483009 ARHGEF28Q8N1W1 1705 aaKnown RBP22.52■■□□□ 1.2
CCDC28B-205ENST00000483009 XPCQ01831 940 aaPredicted RBP22.52■■□□□ 1.2
CCDC28B-205ENST00000483009 TONSLQ96HA7 1378 aa22.5■■□□□ 1.19
CCDC28B-205ENST00000483009 KIF1AQ12756 1690 aa22.5■■□□□ 1.19
CCDC28B-205ENST00000483009 TULP4Q9NRJ4 1543 aa22.49■■□□□ 1.19
CCDC28B-205ENST00000483009 PRR36Q9H6K5 1346 aa22.49■■□□□ 1.19
CCDC28B-205ENST00000483009 KRT28Q7Z3Y7 464 aa22.47■■□□□ 1.19
CCDC28B-205ENST00000483009 CENPJQ9HC77 1338 aaPredicted RBP22.47■■□□□ 1.19
CCDC28B-205ENST00000483009 ROCK2O75116 1388 aaKnown RBP22.47■■□□□ 1.19
CCDC28B-205ENST00000483009 SOCS7O14512 581 aa22.46■■□□□ 1.19
CCDC28B-205ENST00000483009 NBPF8Q3BBV2 869 aa22.46■■□□□ 1.19
CCDC28B-205ENST00000483009 POTEAQ6S8J7 498 aa22.46■■□□□ 1.19
CCDC28B-205ENST00000483009 USP32Q8NFA0 1604 aa22.46■■□□□ 1.19
CCDC28B-205ENST00000483009 PMFBP1Q8TBY8 1022 aa22.45■■□□□ 1.18
CCDC28B-205ENST00000483009 PCGF6Q9BYE7 350 aa22.45■■□□□ 1.18
CCDC28B-205ENST00000483009 PSME1Q06323 249 aa22.44■■□□□ 1.18
CCDC28B-205ENST00000483009 SPATA31A3Q5VYP0 1347 aa22.44■■□□□ 1.18
CCDC28B-205ENST00000483009 TRPM1Q7Z4N2 1603 aa22.44■■□□□ 1.18
CCDC28B-205ENST00000483009 CDK19Q9BWU1 502 aa22.43■■□□□ 1.18
CCDC28B-205ENST00000483009 ATP7BP35670 1465 aa22.42■■□□□ 1.18
CCDC28B-205ENST00000483009 GPRASP1Q5JY77 1395 aa22.42■■□□□ 1.18
CCDC28B-205ENST00000483009 ZNF772Q68DY9 489 aaPredicted RBP22.42■■□□□ 1.18
CCDC28B-205ENST00000483009 NUDT16Q96DE0 195 aaKnown RBP22.42■■□□□ 1.18
CCDC28B-205ENST00000483009 SBNO1A3KN83 1393 aa22.41■■□□□ 1.18
CCDC28B-205ENST00000483009 ADAMTS2O95450 1211 aa22.41■■□□□ 1.18
CCDC28B-205ENST00000483009 TNS3Q68CZ2 1445 aa22.4■■□□□ 1.18
CCDC28B-205ENST00000483009 RGPD8O14715 1765 aaPredicted RBP22.4■■□□□ 1.18
CCDC28B-205ENST00000483009 COL22A1Q8NFW1 1626 aaPredicted RBP22.4■■□□□ 1.18
CCDC28B-205ENST00000483009 C8orf37Q96NL8 207 aa22.4■■□□□ 1.18
CCDC28B-205ENST00000483009 AFF2P51816 1311 aa22.39■■□□□ 1.18
CCDC28B-205ENST00000483009 NGDNQ8NEJ9 315 aaKnown RBP22.38■■□□□ 1.17
CCDC28B-205ENST00000483009 CCDC61Q9Y6R9 512 aa22.37■■□□□ 1.17
CCDC28B-205ENST00000483009 RALGAPBQ86X10 1494 aa22.36■■□□□ 1.17
CCDC28B-205ENST00000483009 ARHGEF10O15013 1369 aa22.36■■□□□ 1.17
CCDC28B-205ENST00000483009 SRPK2P78362 688 aaKnown RBP22.35■■□□□ 1.17
CCDC28B-205ENST00000483009 NGLY1Q96IV0 654 aa22.35■■□□□ 1.17
CCDC28B-205ENST00000483009 CARD11Q9BXL7 1154 aa22.35■■□□□ 1.17
CCDC28B-205ENST00000483009 CLSPNQ9HAW4 1339 aa22.34■■□□□ 1.17
CCDC28B-205ENST00000483009 LMOD2Q6P5Q4 547 aa22.34■■□□□ 1.17
CCDC28B-205ENST00000483009 PLEKHG3A1L390 1219 aa22.32■■□□□ 1.16
CCDC28B-205ENST00000483009 CABP2Q9NPB3 220 aa22.32■■□□□ 1.16
CCDC28B-205ENST00000483009 EVC2Q86UK5 1308 aa22.31■■□□□ 1.16
CCDC28B-205ENST00000483009 QRICH2Q9H0J4 1663 aa22.31■■□□□ 1.16
CCDC28B-205ENST00000483009 POLR3AO14802 1390 aaPredicted RBP22.31■■□□□ 1.16
CCDC28B-205ENST00000483009 FNBP4Q8N3X1 1017 aaPredicted RBP22.3■■□□□ 1.16
CCDC28B-205ENST00000483009 ITSN1Q15811 1721 aa22.3■■□□□ 1.16
CCDC28B-205ENST00000483009 HAP1P54257 671 aaPredicted RBP22.29■■□□□ 1.16
CCDC28B-205ENST00000483009 ACEP12821 1306 aa22.29■■□□□ 1.16
CCDC28B-205ENST00000483009 TOPAZ1Q8N9V7 1692 aa22.28■■□□□ 1.16
CCDC28B-205ENST00000483009 CABLES1Q8TDN4 633 aa22.28■■□□□ 1.16
CCDC28B-205ENST00000483009 TRPM3Q9HCF6 1732 aaPredicted RBP22.28■■□□□ 1.16
CCDC28B-205ENST00000483009 SBNO2Q9Y2G9 1366 aa22.27■■□□□ 1.16
CCDC28B-205ENST00000483009 PAK3O75914 559 aaPredicted RBP22.27■■□□□ 1.16
CCDC28B-205ENST00000483009 RXRBP28702 533 aa22.27■■□□□ 1.16
CCDC28B-205ENST00000483009 PPIP5K1Q6PFW1 1433 aa22.27■■□□□ 1.16
CCDC28B-205ENST00000483009 QTRT2Q9H974 415 aaKnown RBP22.27■■□□□ 1.16
CCDC28B-205ENST00000483009 USP21Q9UK80 565 aa22.27■■□□□ 1.16
CCDC28B-205ENST00000483009 PLEKHG5O94827 1062 aa22.26■■□□□ 1.15
CCDC28B-205ENST00000483009 TIMELESSQ9UNS1 1208 aa22.25■■□□□ 1.15
CCDC28B-205ENST00000483009 RBM6P78332 1123 aaKnown RBP22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms