RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 C14orf93Q9H972 538 aaKnown RBP21.9■■□□□ 1.1
LIMS3-204ENST00000482065 ORAI2Q96SN7 254 aa21.89■■□□□ 1.09
LIMS3-204ENST00000482065 CDC42BPGQ6DT37 1551 aa21.88■■□□□ 1.09
LIMS3-204ENST00000482065 POTEAQ6S8J7 498 aa21.88■■□□□ 1.09
LIMS3-204ENST00000482065 LAMC1P11047 1609 aa21.87■■□□□ 1.09
LIMS3-204ENST00000482065 NUTM2BA6NNL0 878 aaPredicted RBP21.84■■□□□ 1.09
LIMS3-204ENST00000482065 NUTM2EB1AL46 878 aaPredicted RBP21.84■■□□□ 1.09
LIMS3-204ENST00000482065 MEX3CQ5U5Q3 659 aaKnown RBP21.84■■□□□ 1.09
LIMS3-204ENST00000482065 NUTM2AQ8IVF1 878 aaPredicted RBP21.84■■□□□ 1.09
LIMS3-204ENST00000482065 LRRC59Q96AG4 307 aaKnown RBP21.84■■□□□ 1.09
LIMS3-204ENST00000482065 KDM2AQ9Y2K7 1162 aa21.83■■□□□ 1.09
LIMS3-204ENST00000482065 DHX57Q6P158 1386 aaKnown RBP21.83■■□□□ 1.08
LIMS3-204ENST00000482065 NUTM2FA1L443 756 aa21.82■■□□□ 1.08
LIMS3-204ENST00000482065 PNPLA6Q8IY17 1366 aa21.82■■□□□ 1.08
LIMS3-204ENST00000482065 DCAF11Q8TEB1 546 aa21.81■■□□□ 1.08
LIMS3-204ENST00000482065 ESCO1Q5FWF5 840 aa21.8■■□□□ 1.08
LIMS3-204ENST00000482065 SOS2Q07890 1332 aaPredicted RBP21.8■■□□□ 1.08
LIMS3-204ENST00000482065 SIRT1Q96EB6 747 aa21.79■■□□□ 1.08
LIMS3-204ENST00000482065 ADGRB1O14514 1584 aa21.78■■□□□ 1.08
LIMS3-204ENST00000482065 FMN2Q9NZ56 1722 aa21.78■■□□□ 1.08
LIMS3-204ENST00000482065 SAFB2Q14151 953 aaKnown RBP eCLIP21.77■■□□□ 1.08
LIMS3-204ENST00000482065 PRAM1Q96QH2 718 aa21.77■■□□□ 1.08
LIMS3-204ENST00000482065 DLC1Q96QB1 1528 aa21.75■■□□□ 1.07
LIMS3-204ENST00000482065 FOXO3O43524 673 aa21.74■■□□□ 1.07
LIMS3-204ENST00000482065 XPCQ01831 940 aaPredicted RBP21.74■■□□□ 1.07
LIMS3-204ENST00000482065 NPHP3Q7Z494 1330 aa21.74■■□□□ 1.07
LIMS3-204ENST00000482065 PXDNQ92626 1479 aa21.73■■□□□ 1.07
LIMS3-204ENST00000482065 TRAK1Q9UPV9 953 aa21.73■■□□□ 1.07
LIMS3-204ENST00000482065 ZNF772Q68DY9 489 aaPredicted RBP21.72■■□□□ 1.07
LIMS3-204ENST00000482065 POGKQ9P215 609 aa21.72■■□□□ 1.07
LIMS3-204ENST00000482065 STAC3Q96MF2 364 aa21.71■■□□□ 1.07
LIMS3-204ENST00000482065 AFF2P51816 1311 aa21.71■■□□□ 1.07
LIMS3-204ENST00000482065 RGPD8O14715 1765 aaPredicted RBP21.7■■□□□ 1.06
LIMS3-204ENST00000482065 C8orf37Q96NL8 207 aa21.7■■□□□ 1.06
LIMS3-204ENST00000482065 ADAMTS2O95450 1211 aa21.69■■□□□ 1.06
LIMS3-204ENST00000482065 COL22A1Q8NFW1 1626 aaPredicted RBP21.68■■□□□ 1.06
LIMS3-204ENST00000482065 KIF1AQ12756 1690 aa21.68■■□□□ 1.06
LIMS3-204ENST00000482065 ADGRB2O60241 1585 aa21.66■■□□□ 1.06
LIMS3-204ENST00000482065 HIRIP3Q9BW71 556 aaPredicted RBP21.66■■□□□ 1.06
LIMS3-204ENST00000482065 MINK1Q8N4C8 1332 aaPredicted RBP21.65■■□□□ 1.06
LIMS3-204ENST00000482065 PHF8Q9UPP1 1060 aa21.65■■□□□ 1.06
LIMS3-204ENST00000482065 USP32Q8NFA0 1604 aa21.64■■□□□ 1.05
LIMS3-204ENST00000482065 ARHGEF28Q8N1W1 1705 aaKnown RBP21.63■■□□□ 1.05
LIMS3-204ENST00000482065 KRT28Q7Z3Y7 464 aa21.62■■□□□ 1.05
LIMS3-204ENST00000482065 NGLY1Q96IV0 654 aa21.62■■□□□ 1.05
LIMS3-204ENST00000482065 RXRBP28702 533 aa21.61■■□□□ 1.05
LIMS3-204ENST00000482065 ANKARQ7Z5J8 1434 aa21.61■■□□□ 1.05
LIMS3-204ENST00000482065 SPATA31A3Q5VYP0 1347 aa21.6■■□□□ 1.05
LIMS3-204ENST00000482065 PMFBP1Q8TBY8 1022 aa21.59■■□□□ 1.05
LIMS3-204ENST00000482065 KIAA1210Q9ULL0 1709 aa21.59■■□□□ 1.05
LIMS3-204ENST00000482065 PRR36Q9H6K5 1346 aa21.58■■□□□ 1.05
LIMS3-204ENST00000482065 SIN3AQ96ST3 1273 aa21.58■■□□□ 1.05
LIMS3-204ENST00000482065 QTRT2Q9H974 415 aaKnown RBP21.58■■□□□ 1.05
LIMS3-204ENST00000482065 TULP4Q9NRJ4 1543 aa21.57■■□□□ 1.04
LIMS3-204ENST00000482065 WASLO00401 505 aaPredicted RBP21.57■■□□□ 1.04
LIMS3-204ENST00000482065 NBPF1Q3BBV0 1214 aa21.57■■□□□ 1.04
LIMS3-204ENST00000482065 TNS3Q68CZ2 1445 aa21.56■■□□□ 1.04
LIMS3-204ENST00000482065 MARF1Q9Y4F3 1742 aaKnown RBP21.55■■□□□ 1.04
LIMS3-204ENST00000482065 PSME1Q06323 249 aa21.55■■□□□ 1.04
LIMS3-204ENST00000482065 USP21Q9UK80 565 aa21.55■■□□□ 1.04
LIMS3-204ENST00000482065 EIF3AQ14152 1382 aaKnown RBP21.55■■□□□ 1.04
LIMS3-204ENST00000482065 FNBP4Q8N3X1 1017 aaPredicted RBP21.54■■□□□ 1.04
LIMS3-204ENST00000482065 L3MBTL2Q969R5 705 aa21.54■■□□□ 1.04
LIMS3-204ENST00000482065 CDK12Q9NYV4 1490 aaPredicted RBP21.53■■□□□ 1.04
LIMS3-204ENST00000482065 RBM6P78332 1123 aaKnown RBP21.53■■□□□ 1.04
LIMS3-204ENST00000482065 SBNO1A3KN83 1393 aa21.52■■□□□ 1.04
LIMS3-204ENST00000482065 PLEKHG5O94827 1062 aa21.52■■□□□ 1.04
LIMS3-204ENST00000482065 NEUROD1Q13562 356 aa21.52■■□□□ 1.04
LIMS3-204ENST00000482065 RGS12O14924 1447 aa21.52■■□□□ 1.04
LIMS3-204ENST00000482065 LMOD2Q6P5Q4 547 aa21.51■■□□□ 1.03
LIMS3-204ENST00000482065 CABLES1Q8TDN4 633 aa21.5■■□□□ 1.03
LIMS3-204ENST00000482065 ATP7BP35670 1465 aa21.5■■□□□ 1.03
LIMS3-204ENST00000482065 TRPM3Q9HCF6 1732 aaPredicted RBP21.49■■□□□ 1.03
LIMS3-204ENST00000482065 ATRNO75882 1429 aa21.49■■□□□ 1.03
LIMS3-204ENST00000482065 TRPC5Q9UL62 973 aaPredicted RBP21.49■■□□□ 1.03
LIMS3-204ENST00000482065 BCL9LQ86UU0 1499 aa21.48■■□□□ 1.03
LIMS3-204ENST00000482065 ABCA3Q99758 1704 aa21.47■■□□□ 1.03
LIMS3-204ENST00000482065 HAP1P54257 671 aaPredicted RBP21.47■■□□□ 1.03
LIMS3-204ENST00000482065 NUDT16Q96DE0 195 aaKnown RBP21.47■■□□□ 1.03
LIMS3-204ENST00000482065 CDK19Q9BWU1 502 aa21.47■■□□□ 1.03
LIMS3-204ENST00000482065 ARHGEF10O15013 1369 aa21.47■■□□□ 1.03
LIMS3-204ENST00000482065 GPRASP1Q5JY77 1395 aa21.47■■□□□ 1.03
LIMS3-204ENST00000482065 ITSN1Q15811 1721 aa21.46■■□□□ 1.03
LIMS3-204ENST00000482065 NGDNQ8NEJ9 315 aaKnown RBP21.46■■□□□ 1.03
LIMS3-204ENST00000482065 TRPM1Q7Z4N2 1603 aa21.44■■□□□ 1.02
LIMS3-204ENST00000482065 ALS2Q96Q42 1657 aa21.44■■□□□ 1.02
LIMS3-204ENST00000482065 UPF1Q92900 1129 aaKnown RBP eCLIP21.44■■□□□ 1.02
LIMS3-204ENST00000482065 SLIT2O94813 1529 aa21.44■■□□□ 1.02
LIMS3-204ENST00000482065 CENPJQ9HC77 1338 aaPredicted RBP21.43■■□□□ 1.02
LIMS3-204ENST00000482065 TOPAZ1Q8N9V7 1692 aa21.42■■□□□ 1.02
LIMS3-204ENST00000482065 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.41■■□□□ 1.02
LIMS3-204ENST00000482065 QRICH2Q9H0J4 1663 aa21.41■■□□□ 1.02
LIMS3-204ENST00000482065 TRIM26Q12899 539 aaPredicted RBP21.41■■□□□ 1.02
LIMS3-204ENST00000482065 UNC5CLQ8IV45 518 aa21.41■■□□□ 1.02
LIMS3-204ENST00000482065 PAK3O75914 559 aaPredicted RBP21.4■■□□□ 1.02
LIMS3-204ENST00000482065 CCDC61Q9Y6R9 512 aa21.39■■□□□ 1.01
LIMS3-204ENST00000482065 PLCH1Q4KWH8 1693 aa21.38■■□□□ 1.01
LIMS3-204ENST00000482065 GJD4Q96KN9 370 aaPredicted RBP21.38■■□□□ 1.01
LIMS3-204ENST00000482065 ROCK2O75116 1388 aaKnown RBP21.37■■□□□ 1.01
LIMS3-204ENST00000482065 ACEP12821 1306 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms