RNA–Protein interactions for RNA: ENST00000479080.1

CHD3-210, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 519 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-210ENST00000479080 ZNF335Q9H4Z2 1342 aaPredicted RBP18.44■□□□□ 0.54
CHD3-210ENST00000479080 ADGRB2O60241 1585 aa18.42■□□□□ 0.54
CHD3-210ENST00000479080 WASHC2AQ641Q2 1341 aa18.42■□□□□ 0.54
CHD3-210ENST00000479080 KIF7Q2M1P5 1343 aa18.41■□□□□ 0.54
CHD3-210ENST00000479080 CCDC7Q96M83 1385 aa18.41■□□□□ 0.54
CHD3-210ENST00000479080 NALCNQ8IZF0 1738 aa18.4■□□□□ 0.54
CHD3-210ENST00000479080 RBM33Q96EV2 1170 aaKnown RBP18.4■□□□□ 0.54
CHD3-210ENST00000479080 MINK1Q8N4C8 1332 aaPredicted RBP18.4■□□□□ 0.54
CHD3-210ENST00000479080 POGKQ9P215 609 aa18.39■□□□□ 0.53
CHD3-210ENST00000479080 LRRC7Q96NW7 1537 aa18.38■□□□□ 0.53
CHD3-210ENST00000479080 LTBP4Q8N2S1 1624 aa18.38■□□□□ 0.53
CHD3-210ENST00000479080 DMRT2Q9Y5R5 561 aa18.37■□□□□ 0.53
CHD3-210ENST00000479080 XIRP1Q702N8 1843 aaKnown RBP18.37■□□□□ 0.53
CHD3-210ENST00000479080 ADGRL3Q9HAR2 1447 aa18.36■□□□□ 0.53
CHD3-210ENST00000479080 MYOM1P52179 1685 aa18.35■□□□□ 0.53
CHD3-210ENST00000479080 TMEM94Q12767 1356 aa18.35■□□□□ 0.53
CHD3-210ENST00000479080 TMF1P82094 1093 aa18.34■□□□□ 0.53
CHD3-210ENST00000479080 FBXO41Q8TF61 875 aa18.34■□□□□ 0.53
CHD3-210ENST00000479080 CDC42BPGQ6DT37 1551 aa18.34■□□□□ 0.53
CHD3-210ENST00000479080 USP32Q8NFA0 1604 aa18.33■□□□□ 0.52
CHD3-210ENST00000479080 PRR36Q9H6K5 1346 aa18.32■□□□□ 0.52
CHD3-210ENST00000479080 PROSER2Q86WR7 435 aaPredicted RBP18.32■□□□□ 0.52
CHD3-210ENST00000479080 ATP7BP35670 1465 aa18.32■□□□□ 0.52
CHD3-210ENST00000479080 WASLO00401 505 aaPredicted RBP18.31■□□□□ 0.52
CHD3-210ENST00000479080 CABP2Q9NPB3 220 aa18.31■□□□□ 0.52
CHD3-210ENST00000479080 FMN2Q9NZ56 1722 aa18.31■□□□□ 0.52
CHD3-210ENST00000479080 EVC2Q86UK5 1308 aa18.3■□□□□ 0.52
CHD3-210ENST00000479080 CDK19Q9BWU1 502 aa18.3■□□□□ 0.52
CHD3-210ENST00000479080 NCOA3Q9Y6Q9 1424 aa18.3■□□□□ 0.52
CHD3-210ENST00000479080 TOPAZ1Q8N9V7 1692 aa18.28■□□□□ 0.52
CHD3-210ENST00000479080 PUS7Q96PZ0 661 aaKnown RBP18.26■□□□□ 0.51
CHD3-210ENST00000479080 CD163L1Q9NR16 1453 aa18.26■□□□□ 0.51
CHD3-210ENST00000479080 POLR3GLQ9BT43 218 aa18.25■□□□□ 0.51
CHD3-210ENST00000479080 SLC24A1O60721 1099 aa18.24■□□□□ 0.51
CHD3-210ENST00000479080 SRPK2P78362 688 aaKnown RBP18.24■□□□□ 0.51
CHD3-210ENST00000479080 DCCP43146 1447 aa18.23■□□□□ 0.51
CHD3-210ENST00000479080 ATAD2Q6PL18 1390 aa18.23■□□□□ 0.51
CHD3-210ENST00000479080 DDX10Q13206 875 aaKnown RBP18.23■□□□□ 0.51
CHD3-210ENST00000479080 MST1RQ04912 1400 aa18.23■□□□□ 0.51
CHD3-210ENST00000479080 ANKARQ7Z5J8 1434 aa18.23■□□□□ 0.51
CHD3-210ENST00000479080 CDCA8Q53HL2 280 aa18.22■□□□□ 0.51
CHD3-210ENST00000479080 NUDT16Q96DE0 195 aaKnown RBP18.22■□□□□ 0.51
CHD3-210ENST00000479080 NUTM2FA1L443 756 aa18.21■□□□□ 0.51
CHD3-210ENST00000479080 SLC12A5Q9H2X9 1139 aa18.21■□□□□ 0.51
CHD3-210ENST00000479080 C19orf44Q9H6X5 657 aa18.2■□□□□ 0.5
CHD3-210ENST00000479080 PPIP5K1Q6PFW1 1433 aa18.2■□□□□ 0.5
CHD3-210ENST00000479080 C1orf167Q5SNV9 1468 aa18.2■□□□□ 0.5
CHD3-210ENST00000479080 RGPD8O14715 1765 aaPredicted RBP18.19■□□□□ 0.5
CHD3-210ENST00000479080 C14orf37Q86TY3 774 aa18.18■□□□□ 0.5
CHD3-210ENST00000479080 MSH6P52701 1360 aa18.17■□□□□ 0.5
CHD3-210ENST00000479080 CABP1Q9NZU7 370 aa18.17■□□□□ 0.5
CHD3-210ENST00000479080 A0A1W2PP64 1363 aa18.17■□□□□ 0.5
CHD3-210ENST00000479080 CPSF1Q10570 1443 aaKnown RBP18.16■□□□□ 0.5
CHD3-210ENST00000479080 CARD14Q9BXL6 1004 aa18.16■□□□□ 0.5
CHD3-210ENST00000479080 PANK3Q9H999 370 aa18.16■□□□□ 0.5
CHD3-210ENST00000479080 ANKRD36BQ8N2N9 1353 aa18.16■□□□□ 0.5
CHD3-210ENST00000479080 NINLQ9Y2I6 1382 aa18.16■□□□□ 0.5
CHD3-210ENST00000479080 ITSN1Q15811 1721 aa18.15■□□□□ 0.5
CHD3-210ENST00000479080 PER1O15534 1290 aaPredicted RBP18.15■□□□□ 0.5
CHD3-210ENST00000479080 CCDC61Q9Y6R9 512 aa18.15■□□□□ 0.5
CHD3-210ENST00000479080 PLEKHG3A1L390 1219 aa18.14■□□□□ 0.49
CHD3-210ENST00000479080 TMC1Q8TDI8 760 aa18.14■□□□□ 0.49
CHD3-210ENST00000479080 NRKQ7Z2Y5 1582 aa18.13■□□□□ 0.49
CHD3-210ENST00000479080 AKAP12Q02952 1782 aa18.13■□□□□ 0.49
CHD3-210ENST00000479080 ORAI2Q96SN7 254 aa18.13■□□□□ 0.49
CHD3-210ENST00000479080 POLR3AO14802 1390 aaPredicted RBP18.13■□□□□ 0.49
CHD3-210ENST00000479080 MON2Q7Z3U7 1717 aa18.12■□□□□ 0.49
CHD3-210ENST00000479080 ATF3P18847 181 aa18.11■□□□□ 0.49
CHD3-210ENST00000479080 CADPS2Q86UW7 1296 aa18.11■□□□□ 0.49
CHD3-210ENST00000479080 SSH2Q76I76 1423 aa18.11■□□□□ 0.49
CHD3-210ENST00000479080 NSD3Q9BZ95 1437 aa18.1■□□□□ 0.49
CHD3-210ENST00000479080 ACEP12821 1306 aa18.1■□□□□ 0.49
CHD3-210ENST00000479080 PMFBP1Q8TBY8 1022 aa18.1■□□□□ 0.49
CHD3-210ENST00000479080 PHF8Q9UPP1 1060 aa18.09■□□□□ 0.49
CHD3-210ENST00000479080 IQSEC2Q5JU85 1478 aa18.08■□□□□ 0.49
CHD3-210ENST00000479080 USP6P35125 1406 aa18.08■□□□□ 0.49
CHD3-210ENST00000479080 DIEXFQ68CQ4 756 aaKnown RBP18.08■□□□□ 0.48
CHD3-210ENST00000479080 KIF1AQ12756 1690 aa18.08■□□□□ 0.48
CHD3-210ENST00000479080 ESCO1Q5FWF5 840 aa18.06■□□□□ 0.48
CHD3-210ENST00000479080 AMER1Q5JTC6 1135 aaPredicted RBP18.06■□□□□ 0.48
CHD3-210ENST00000479080 BRINP3Q76B58 766 aa18.06■□□□□ 0.48
CHD3-210ENST00000479080 KTN1Q86UP2 1357 aaKnown RBP18.05■□□□□ 0.48
CHD3-210ENST00000479080 SLAIN2Q9P270 581 aa18.05■□□□□ 0.48
CHD3-210ENST00000479080 EDC4Q6P2E9 1401 aaKnown RBP18.05■□□□□ 0.48
CHD3-210ENST00000479080 TRPM3Q9HCF6 1732 aaPredicted RBP18.04■□□□□ 0.48
CHD3-210ENST00000479080 SOCS7O14512 581 aa18.04■□□□□ 0.48
CHD3-210ENST00000479080 CERKQ8TCT0 537 aa18.04■□□□□ 0.48
CHD3-210ENST00000479080 TERF2IPQ9NYB0 399 aa18.04■□□□□ 0.48
CHD3-210ENST00000479080 PXDNQ92626 1479 aa18.03■□□□□ 0.48
CHD3-210ENST00000479080 HDGFL2Q7Z4V5 671 aaPredicted RBP18.03■□□□□ 0.48
CHD3-210ENST00000479080 DDX17Q92841 729 aaKnown RBP18.03■□□□□ 0.48
CHD3-210ENST00000479080 NPC1L1Q9UHC9 1359 aa18.02■□□□□ 0.47
CHD3-210ENST00000479080 NHSL1Q5SYE7 1610 aa18.01■□□□□ 0.47
CHD3-210ENST00000479080 TTC21BQ7Z4L5 1316 aa18.01■□□□□ 0.47
CHD3-210ENST00000479080 NGDNQ8NEJ9 315 aaKnown RBP18.01■□□□□ 0.47
CHD3-210ENST00000479080 ROBO1Q9Y6N7 1651 aa18.01■□□□□ 0.47
CHD3-210ENST00000479080 PIK3C2AO00443 1686 aa18■□□□□ 0.47
CHD3-210ENST00000479080 FOXO3O43524 673 aa18■□□□□ 0.47
CHD3-210ENST00000479080 ZRANB1Q9UGI0 708 aa18■□□□□ 0.47
CHD3-210ENST00000479080 MARF1Q9Y4F3 1742 aaKnown RBP17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms