RNA–Protein interactions for RNA: ENST00000478658.1

USF3-202, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 8,461 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-202ENST00000478658 CCDC172P0C7W6 258 aa6.46□□□□□ -1.37
USF3-202ENST00000478658 SP100P23497 879 aaPredicted RBP6.46□□□□□ -1.37
USF3-202ENST00000478658 WDR63Q8IWG1 891 aa6.46□□□□□ -1.38
USF3-202ENST00000478658 CCAR2Q8N163 923 aaKnown RBP6.46□□□□□ -1.38
USF3-202ENST00000478658 FILIP1LQ4L180 1135 aa6.46□□□□□ -1.38
USF3-202ENST00000478658 PPP4R3AQ6IN85 833 aa6.46□□□□□ -1.38
USF3-202ENST00000478658 FILIP1Q7Z7B0 1213 aa6.46□□□□□ -1.38
USF3-202ENST00000478658 VPS37DQ86XT2 251 aa6.46□□□□□ -1.38
USF3-202ENST00000478658 FHAD1B1AJZ9 1412 aa6.46□□□□□ -1.38
USF3-202ENST00000478658 SPDYE4A6NLX3 237 aa6.46□□□□□ -1.38
USF3-202ENST00000478658 NOL3O60936 208 aaKnown RBP6.46□□□□□ -1.38
USF3-202ENST00000478658 PRKCSHP14314 528 aaPredicted RBP6.46□□□□□ -1.38
USF3-202ENST00000478658 NOP58Q9Y2X3 529 aaKnown RBP6.46□□□□□ -1.38
USF3-202ENST00000478658 SETD5Q9C0A6 1442 aa6.46□□□□□ -1.38
USF3-202ENST00000478658 DACH1Q9UI36 760 aa6.46□□□□□ -1.38
USF3-202ENST00000478658 MAP7Q14244 749 aa6.45□□□□□ -1.38
USF3-202ENST00000478658 NEUROD2Q15784 382 aa6.45□□□□□ -1.38
USF3-202ENST00000478658 AMER1Q5JTC6 1135 aaPredicted RBP6.45□□□□□ -1.38
USF3-202ENST00000478658 OPTNQ96CV9 577 aa6.45□□□□□ -1.38
USF3-202ENST00000478658 SWAP70Q9UH65 585 aa6.45□□□□□ -1.38
USF3-202ENST00000478658 ARHGAP25P42331 645 aa6.45□□□□□ -1.38
USF3-202ENST00000478658 MTUS2Q5JR59 1369 aa6.45□□□□□ -1.38
USF3-202ENST00000478658 PPP1R12BO60237 982 aaPredicted RBP6.45□□□□□ -1.38
USF3-202ENST00000478658 GCOM1H8Y6P7 765 aaPredicted RBP6.45□□□□□ -1.38
USF3-202ENST00000478658 MYZAPP0CAP1 466 aa6.45□□□□□ -1.38
USF3-202ENST00000478658 GSE1Q14687 1217 aa6.45□□□□□ -1.38
USF3-202ENST00000478658 TAOK2Q9UL54 1235 aa6.45□□□□□ -1.38
USF3-202ENST00000478658 DIAPH1O60610 1272 aaKnown RBP6.45□□□□□ -1.38
USF3-202ENST00000478658 SART3Q15020 963 aaKnown RBP6.45□□□□□ -1.38
USF3-202ENST00000478658 KIF3CO14782 793 aa6.44□□□□□ -1.38
USF3-202ENST00000478658 AXDND1Q5T1B0 1012 aaPredicted RBP6.44□□□□□ -1.38
USF3-202ENST00000478658 ANKRD62A6NC57 917 aa6.44□□□□□ -1.38
USF3-202ENST00000478658 SH3BGRP55822 239 aaPredicted RBP6.44□□□□□ -1.38
USF3-202ENST00000478658 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.44□□□□□ -1.38
USF3-202ENST00000478658 KIAA1524Q8TCG1 905 aa6.44□□□□□ -1.38
USF3-202ENST00000478658 GOLIM4O00461 696 aa6.44□□□□□ -1.38
USF3-202ENST00000478658 STMN1P16949 149 aa6.44□□□□□ -1.38
USF3-202ENST00000478658 CASTP20810 708 aaKnown RBP6.44□□□□□ -1.38
USF3-202ENST00000478658 TRIM22Q8IYM9 498 aa6.44□□□□□ -1.38
USF3-202ENST00000478658 LRSAM1Q6UWE0 723 aa6.44□□□□□ -1.38
USF3-202ENST00000478658 CDK5RAP3Q96JB5 506 aa6.44□□□□□ -1.38
USF3-202ENST00000478658 TIGD1Q96MW7 591 aa6.44□□□□□ -1.38
USF3-202ENST00000478658 ZHX1Q9UKY1 873 aaPredicted RBP6.44□□□□□ -1.38
USF3-202ENST00000478658 MICALCLQ6ZW33 695 aa6.44□□□□□ -1.38
USF3-202ENST00000478658 LUZP1Q86V48 1076 aa6.44□□□□□ -1.38
USF3-202ENST00000478658 CGNQ9P2M7 1197 aaKnown RBP6.44□□□□□ -1.38
USF3-202ENST00000478658 MAP3K7CLP57077 242 aa6.43□□□□□ -1.38
USF3-202ENST00000478658 TNIP1Q15025 636 aa6.43□□□□□ -1.38
USF3-202ENST00000478658 WDR66Q8TBY9 1149 aa6.43□□□□□ -1.38
USF3-202ENST00000478658 BBXQ8WY36 941 aaPredicted RBP6.43□□□□□ -1.38
USF3-202ENST00000478658 PPFIA2O75334 1257 aa6.43□□□□□ -1.38
USF3-202ENST00000478658 RAB3IPQ96QF0 476 aaPredicted RBP6.43□□□□□ -1.38
USF3-202ENST00000478658 RTN4Q9NQC3 1192 aaKnown RBP6.43□□□□□ -1.38
USF3-202ENST00000478658 AEBP1Q8IUX7 1158 aa6.43□□□□□ -1.38
USF3-202ENST00000478658 MAP4K4O95819 1239 aaPredicted RBP6.43□□□□□ -1.38
USF3-202ENST00000478658 CT47B1P0C2W7 299 aaPredicted RBP6.43□□□□□ -1.38
USF3-202ENST00000478658 COG6Q9Y2V7 657 aa6.43□□□□□ -1.38
USF3-202ENST00000478658 CSB-PGBD3P0DP91 1061 aa6.43□□□□□ -1.38
USF3-202ENST00000478658 CBX1P83916 185 aa6.43□□□□□ -1.38
USF3-202ENST00000478658 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.43□□□□□ -1.38
USF3-202ENST00000478658 SSBP05455 408 aaKnown RBP eCLIP6.43□□□□□ -1.38
USF3-202ENST00000478658 TPRNQ4KMQ1 711 aa6.43□□□□□ -1.38
USF3-202ENST00000478658 CCDC89Q8N998 374 aa6.43□□□□□ -1.38
USF3-202ENST00000478658 GABPB2Q8TAK5 448 aaPredicted RBP6.43□□□□□ -1.38
USF3-202ENST00000478658 ZKSCAN1P17029 563 aaPredicted RBP6.43□□□□□ -1.38
USF3-202ENST00000478658 CEP57L1Q8IYX8 460 aa6.42□□□□□ -1.38
USF3-202ENST00000478658 UQCRHLA0A096LP55 91 aa6.42□□□□□ -1.38
USF3-202ENST00000478658 ZNF853P0CG23 659 aa6.42□□□□□ -1.38
USF3-202ENST00000478658 RBM33Q96EV2 1170 aaKnown RBP6.42□□□□□ -1.38
USF3-202ENST00000478658 RABGAP1Q9Y3P9 1069 aa6.42□□□□□ -1.38
USF3-202ENST00000478658 CPLX1O14810 134 aa6.42□□□□□ -1.38
USF3-202ENST00000478658 SEC63Q9UGP8 760 aaKnown RBP6.42□□□□□ -1.38
USF3-202ENST00000478658 ERC2O15083 957 aa6.42□□□□□ -1.38
USF3-202ENST00000478658 PODXL2Q9NZ53 605 aa6.42□□□□□ -1.38
USF3-202ENST00000478658 USO1O60763 962 aaKnown RBP6.41□□□□□ -1.38
USF3-202ENST00000478658 SF3B2Q13435 895 aaKnown RBP6.41□□□□□ -1.38
USF3-202ENST00000478658 MAP9Q49MG5 647 aa6.41□□□□□ -1.38
USF3-202ENST00000478658 TOMM22Q9NS69 142 aa6.41□□□□□ -1.38
USF3-202ENST00000478658 ANAPC4Q9UJX5 808 aa6.41□□□□□ -1.38
USF3-202ENST00000478658 CGNL1Q0VF96 1302 aa6.41□□□□□ -1.38
USF3-202ENST00000478658 KIF4BQ2VIQ3 1234 aa6.41□□□□□ -1.38
USF3-202ENST00000478658 RGS22Q8NE09 1264 aa6.41□□□□□ -1.38
USF3-202ENST00000478658 ROCK2O75116 1388 aaKnown RBP6.41□□□□□ -1.38
USF3-202ENST00000478658 UACAQ9BZF9 1416 aa6.41□□□□□ -1.38
USF3-202ENST00000478658 MRPS9P82933 396 aaKnown RBP6.41□□□□□ -1.38
USF3-202ENST00000478658 CCDC73Q6ZRK6 1079 aa6.41□□□□□ -1.38
USF3-202ENST00000478658 JMYQ8N9B5 988 aa6.41□□□□□ -1.38
USF3-202ENST00000478658 EID1Q9Y6B2 187 aa6.41□□□□□ -1.38
USF3-202ENST00000478658 GBP3Q9H0R5 595 aa6.41□□□□□ -1.38
USF3-202ENST00000478658 REC8O95072 547 aa6.4□□□□□ -1.38
USF3-202ENST00000478658 NAA16Q6N069 864 aaPredicted RBP6.4□□□□□ -1.38
USF3-202ENST00000478658 GMNNO75496 209 aa6.4□□□□□ -1.38
USF3-202ENST00000478658 PDE4AP27815 886 aa6.4□□□□□ -1.38
USF3-202ENST00000478658 SASS6Q6UVJ0 657 aa6.4□□□□□ -1.38
USF3-202ENST00000478658 SH2D4BQ5SQS7 431 aa6.4□□□□□ -1.38
USF3-202ENST00000478658 VPS36Q86VN1 386 aa6.4□□□□□ -1.38
USF3-202ENST00000478658 EHMT1Q9H9B1 1298 aa6.4□□□□□ -1.38
USF3-202ENST00000478658 PLCD3Q8N3E9 789 aa6.4□□□□□ -1.38
USF3-202ENST00000478658 SPATA32Q96LK8 384 aa6.4□□□□□ -1.38
USF3-202ENST00000478658 CCDC110Q8TBZ0 833 aa6.4□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms