RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 NOS1P29475 1434 aa18.25■□□□□ 0.51
HDAC6-220ENST00000477528 A0A0G2JS52 829 aa18.24■□□□□ 0.51
HDAC6-220ENST00000477528 TESK2Q96S53 571 aa18.24■□□□□ 0.51
HDAC6-220ENST00000477528 PRKAR2BP31323 418 aa18.24■□□□□ 0.51
HDAC6-220ENST00000477528 ADGBQ8N7X0 1667 aa18.24■□□□□ 0.51
HDAC6-220ENST00000477528 WDR7Q9Y4E6 1490 aa18.23■□□□□ 0.51
HDAC6-220ENST00000477528 C14orf93Q9H972 538 aaKnown RBP18.23■□□□□ 0.51
HDAC6-220ENST00000477528 HDAC5Q9UQL6 1122 aa18.22■□□□□ 0.51
HDAC6-220ENST00000477528 RTEL1-TNFRSF6BF6WH68 1400 aa18.22■□□□□ 0.51
HDAC6-220ENST00000477528 ASXL2Q76L83 1435 aa18.21■□□□□ 0.51
HDAC6-220ENST00000477528 KIAA1211Q6ZU35 1233 aa18.21■□□□□ 0.51
HDAC6-220ENST00000477528 TSR2Q969E8 191 aaKnown RBP18.2■□□□□ 0.5
HDAC6-220ENST00000477528 KDM6BO15054 1643 aa18.2■□□□□ 0.5
HDAC6-220ENST00000477528 DENND4BO75064 1496 aaPredicted RBP18.2■□□□□ 0.5
HDAC6-220ENST00000477528 TXNDC2Q86VQ3 553 aa18.19■□□□□ 0.5
HDAC6-220ENST00000477528 AMER1Q5JTC6 1135 aaPredicted RBP18.19■□□□□ 0.5
HDAC6-220ENST00000477528 DUSP27Q5VZP5 1158 aa18.19■□□□□ 0.5
HDAC6-220ENST00000477528 NKTRP30414 1462 aaKnown RBP18.19■□□□□ 0.5
HDAC6-220ENST00000477528 ABCC10Q5T3U5 1492 aa18.19■□□□□ 0.5
HDAC6-220ENST00000477528 GZF1Q9H116 711 aaPredicted RBP18.18■□□□□ 0.5
HDAC6-220ENST00000477528 IDI1Q13907 227 aa18.18■□□□□ 0.5
HDAC6-220ENST00000477528 SPATA31E1Q6ZUB1 1445 aa18.18■□□□□ 0.5
HDAC6-220ENST00000477528 TRIM6-TRIM34B2RNG4 842 aa18.18■□□□□ 0.5
HDAC6-220ENST00000477528 CSB-PGBD3P0DP91 1061 aa18.18■□□□□ 0.5
HDAC6-220ENST00000477528 PTMAP06454 111 aaKnown RBP18.18■□□□□ 0.5
HDAC6-220ENST00000477528 ZNF692Q9BU19 519 aaPredicted RBP18.17■□□□□ 0.5
HDAC6-220ENST00000477528 PDZRN3Q9UPQ7 1066 aa18.17■□□□□ 0.5
HDAC6-220ENST00000477528 ARHGEF5Q12774 1597 aa18.17■□□□□ 0.5
HDAC6-220ENST00000477528 GSE1Q14687 1217 aa18.17■□□□□ 0.5
HDAC6-220ENST00000477528 ASXL1Q8IXJ9 1541 aa18.17■□□□□ 0.5
HDAC6-220ENST00000477528 A2MP01023 1474 aa18.17■□□□□ 0.5
HDAC6-220ENST00000477528 C20orf194Q5TEA3 1177 aa18.16■□□□□ 0.5
HDAC6-220ENST00000477528 LNPKQ9C0E8 428 aa18.16■□□□□ 0.5
HDAC6-220ENST00000477528 ZNF518AQ6AHZ1 1483 aa18.16■□□□□ 0.5
HDAC6-220ENST00000477528 ABCA8O94911 1581 aa18.16■□□□□ 0.5
HDAC6-220ENST00000477528 PER1O15534 1290 aaPredicted RBP18.16■□□□□ 0.5
HDAC6-220ENST00000477528 COL17A1Q9UMD9 1497 aaPredicted RBP18.15■□□□□ 0.5
HDAC6-220ENST00000477528 FCHSD2O94868 740 aa18.15■□□□□ 0.5
HDAC6-220ENST00000477528 ST18O60284 1047 aa18.15■□□□□ 0.5
HDAC6-220ENST00000477528 MVPQ14764 893 aaKnown RBP18.15■□□□□ 0.5
HDAC6-220ENST00000477528 TPRNQ4KMQ1 711 aa18.15■□□□□ 0.5
HDAC6-220ENST00000477528 NSD2O96028 1365 aa18.14■□□□□ 0.5
HDAC6-220ENST00000477528 FGD1P98174 961 aa18.14■□□□□ 0.49
HDAC6-220ENST00000477528 NOB1Q9ULX3 412 aaKnown RBP18.14■□□□□ 0.49
HDAC6-220ENST00000477528 GOLGA6L3A6NEY3 463 aa18.14■□□□□ 0.49
HDAC6-220ENST00000477528 TMPOP42166 694 aaKnown RBP18.14■□□□□ 0.49
HDAC6-220ENST00000477528 ATF7IPQ6VMQ6 1270 aa18.14■□□□□ 0.49
HDAC6-220ENST00000477528 C22orf23Q9BZE7 217 aa18.13■□□□□ 0.49
HDAC6-220ENST00000477528 MAST1Q9Y2H9 1570 aa18.13■□□□□ 0.49
HDAC6-220ENST00000477528 DDX11L8A8MPP1 907 aa18.13■□□□□ 0.49
HDAC6-220ENST00000477528 TSPYL4Q9UJ04 414 aa18.13■□□□□ 0.49
HDAC6-220ENST00000477528 GPATCH3Q96I76 525 aa18.12■□□□□ 0.49
HDAC6-220ENST00000477528 MBD5Q9P267 1494 aa18.12■□□□□ 0.49
HDAC6-220ENST00000477528 TWISTNBQ3B726 338 aaPredicted RBP18.11■□□□□ 0.49
HDAC6-220ENST00000477528 FOXD4L1Q9NU39 408 aa18.11■□□□□ 0.49
HDAC6-220ENST00000477528 TEFQ10587 303 aa18.11■□□□□ 0.49
HDAC6-220ENST00000477528 LRPPRCP42704 1394 aaKnown RBP18.11■□□□□ 0.49
HDAC6-220ENST00000477528 GPRASP1Q5JY77 1395 aa18.11■□□□□ 0.49
HDAC6-220ENST00000477528 MSH5O43196 834 aa18.11■□□□□ 0.49
HDAC6-220ENST00000477528 RARSP54136 660 aaKnown RBP18.11■□□□□ 0.49
HDAC6-220ENST00000477528 ZNF428Q96B54 188 aa18.1■□□□□ 0.49
HDAC6-220ENST00000477528 NFKBIBQ15653 356 aa18.1■□□□□ 0.49
HDAC6-220ENST00000477528 C1orf141Q5JVX7 400 aa18.1■□□□□ 0.49
HDAC6-220ENST00000477528 CHMP5Q9NZZ3 219 aa18.09■□□□□ 0.49
HDAC6-220ENST00000477528 NLRP6P59044 892 aa18.09■□□□□ 0.49
HDAC6-220ENST00000477528 CCDC61Q9Y6R9 512 aa18.09■□□□□ 0.49
HDAC6-220ENST00000477528 ABCC11Q96J66 1382 aa18.08■□□□□ 0.49
HDAC6-220ENST00000477528 FKBP5Q13451 457 aaPredicted RBP18.08■□□□□ 0.49
HDAC6-220ENST00000477528 GLIPR1L2Q4G1C9 344 aa18.08■□□□□ 0.49
HDAC6-220ENST00000477528 REC8O95072 547 aa18.08■□□□□ 0.48
HDAC6-220ENST00000477528 FBXO31Q5XUX0 539 aaPredicted RBP18.08■□□□□ 0.48
HDAC6-220ENST00000477528 PPP6R1Q9UPN7 881 aa18.08■□□□□ 0.48
HDAC6-220ENST00000477528 PSME1Q06323 249 aa18.07■□□□□ 0.48
HDAC6-220ENST00000477528 GCC1Q96CN9 775 aa18.07■□□□□ 0.48
HDAC6-220ENST00000477528 WAPLQ7Z5K2 1190 aa18.07■□□□□ 0.48
HDAC6-220ENST00000477528 NUDT16Q96DE0 195 aaKnown RBP18.07■□□□□ 0.48
HDAC6-220ENST00000477528 NFE2L2Q16236 605 aa18.06■□□□□ 0.48
HDAC6-220ENST00000477528 GAS2L2Q8NHY3 880 aa18.06■□□□□ 0.48
HDAC6-220ENST00000477528 PIK3C2GO75747 1445 aa18.06■□□□□ 0.48
HDAC6-220ENST00000477528 ZRSR1Q15695 479 aaKnown RBP18.06■□□□□ 0.48
HDAC6-220ENST00000477528 SULT6B1Q6IMI4 303 aa18.06■□□□□ 0.48
HDAC6-220ENST00000477528 NAP1L5Q96NT1 182 aaPredicted RBP18.06■□□□□ 0.48
HDAC6-220ENST00000477528 RILPL2Q969X0 211 aa18.05■□□□□ 0.48
HDAC6-220ENST00000477528 GOLGA6L4A6NEF3 574 aa18.05■□□□□ 0.48
HDAC6-220ENST00000477528 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.05■□□□□ 0.48
HDAC6-220ENST00000477528 EIF2S2P20042 333 aaKnown RBP18.04■□□□□ 0.48
HDAC6-220ENST00000477528 INTS3Q68E01 1043 aaKnown RBP18.04■□□□□ 0.48
HDAC6-220ENST00000477528 NECTIN2Q92692 538 aa18.04■□□□□ 0.48
HDAC6-220ENST00000477528 THEMISQ8N1K5 641 aaPredicted RBP18.04■□□□□ 0.48
HDAC6-220ENST00000477528 CDC45O75419 566 aa18.04■□□□□ 0.48
HDAC6-220ENST00000477528 ATP7AQ04656 1500 aa18.03■□□□□ 0.48
HDAC6-220ENST00000477528 PUS7Q96PZ0 661 aaKnown RBP18.03■□□□□ 0.48
HDAC6-220ENST00000477528 POLR3AO14802 1390 aaPredicted RBP18.03■□□□□ 0.48
HDAC6-220ENST00000477528 ANKRD36BQ8N2N9 1353 aa18.03■□□□□ 0.48
HDAC6-220ENST00000477528 RRS1Q15050 365 aaKnown RBP18.02■□□□□ 0.48
HDAC6-220ENST00000477528 SKOR2Q2VWA4 1001 aaPredicted RBP18.02■□□□□ 0.48
HDAC6-220ENST00000477528 NAP1L2Q9ULW6 460 aaPredicted RBP18.02■□□□□ 0.48
HDAC6-220ENST00000477528 PLCB2Q00722 1185 aa18.02■□□□□ 0.48
HDAC6-220ENST00000477528 SAMD9LQ8IVG5 1584 aa18.02■□□□□ 0.47
HDAC6-220ENST00000477528 SYAP1Q96A49 352 aaPredicted RBP18.02■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms