RNA–Protein interactions for RNA: ENST00000476183.2

LIME1-204, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5

Gene LIME1, Length 809 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-204ENST00000476183 NHSL1Q5SYE7 1610 aa30.84■■■□□ 2.53
LIME1-204ENST00000476183 SIRT1Q96EB6 747 aa30.83■■■□□ 2.53
LIME1-204ENST00000476183 DDX17Q92841 729 aaKnown RBP30.81■■■□□ 2.52
LIME1-204ENST00000476183 ORAI2Q96SN7 254 aa30.8■■■□□ 2.52
LIME1-204ENST00000476183 TRIM26Q12899 539 aaPredicted RBP30.78■■■□□ 2.52
LIME1-204ENST00000476183 PHF23Q9BUL5 403 aaPredicted RBP30.77■■■□□ 2.52
LIME1-204ENST00000476183 DLC1Q96QB1 1528 aa30.77■■■□□ 2.52
LIME1-204ENST00000476183 PRAM1Q96QH2 718 aa30.75■■■□□ 2.51
LIME1-204ENST00000476183 SHPRHQ149N8 1683 aa30.74■■■□□ 2.51
LIME1-204ENST00000476183 SIN3AQ96ST3 1273 aa30.73■■■□□ 2.51
LIME1-204ENST00000476183 SAFB2Q14151 953 aaKnown RBP eCLIP30.72■■■□□ 2.51
LIME1-204ENST00000476183 TRAK1Q9UPV9 953 aa30.72■■■□□ 2.51
LIME1-204ENST00000476183 FMN2Q9NZ56 1722 aa30.71■■■□□ 2.51
LIME1-204ENST00000476183 NUTM2FA1L443 756 aa30.71■■■□□ 2.51
LIME1-204ENST00000476183 RGS17Q9UGC6 210 aaPredicted RBP30.71■■■□□ 2.51
LIME1-204ENST00000476183 LRP6O75581 1613 aa30.69■■■□□ 2.5
LIME1-204ENST00000476183 ESCO1Q5FWF5 840 aa30.68■■■□□ 2.5
LIME1-204ENST00000476183 POGKQ9P215 609 aa30.68■■■□□ 2.5
LIME1-204ENST00000476183 SPATA31A6Q5VVP1 1343 aa30.68■■■□□ 2.5
LIME1-204ENST00000476183 LRRC59Q96AG4 307 aaKnown RBP30.66■■■□□ 2.5
LIME1-204ENST00000476183 L3MBTL2Q969R5 705 aa30.65■■■□□ 2.5
LIME1-204ENST00000476183 SOS2Q07890 1332 aaPredicted RBP30.65■■■□□ 2.5
LIME1-204ENST00000476183 KIAA1210Q9ULL0 1709 aa30.64■■■□□ 2.5
LIME1-204ENST00000476183 NEUROD1Q13562 356 aa30.63■■■□□ 2.49
LIME1-204ENST00000476183 PNPLA6Q8IY17 1366 aa30.62■■■□□ 2.49
LIME1-204ENST00000476183 ARHGEF28Q8N1W1 1705 aaKnown RBP30.61■■■□□ 2.49
LIME1-204ENST00000476183 ADGRB2O60241 1585 aa30.61■■■□□ 2.49
LIME1-204ENST00000476183 RGPD8O14715 1765 aaPredicted RBP30.61■■■□□ 2.49
LIME1-204ENST00000476183 NBPF1Q3BBV0 1214 aa30.6■■■□□ 2.49
LIME1-204ENST00000476183 FOXO3O43524 673 aa30.59■■■□□ 2.49
LIME1-204ENST00000476183 HIRIP3Q9BW71 556 aaPredicted RBP30.59■■■□□ 2.49
LIME1-204ENST00000476183 PXDNQ92626 1479 aa30.58■■■□□ 2.49
LIME1-204ENST00000476183 NPHP3Q7Z494 1330 aa30.58■■■□□ 2.49
LIME1-204ENST00000476183 MINK1Q8N4C8 1332 aaPredicted RBP30.58■■■□□ 2.49
LIME1-204ENST00000476183 NUTM2BA6NNL0 878 aaPredicted RBP30.57■■■□□ 2.48
LIME1-204ENST00000476183 NUTM2EB1AL46 878 aaPredicted RBP30.57■■■□□ 2.48
LIME1-204ENST00000476183 NUTM2AQ8IVF1 878 aaPredicted RBP30.57■■■□□ 2.48
LIME1-204ENST00000476183 SOCS7O14512 581 aa30.55■■■□□ 2.48
LIME1-204ENST00000476183 XPCQ01831 940 aaPredicted RBP30.55■■■□□ 2.48
LIME1-204ENST00000476183 USP32Q8NFA0 1604 aa30.55■■■□□ 2.48
LIME1-204ENST00000476183 POTEAQ6S8J7 498 aa30.54■■■□□ 2.48
LIME1-204ENST00000476183 KIF1AQ12756 1690 aa30.54■■■□□ 2.48
LIME1-204ENST00000476183 MEX3CQ5U5Q3 659 aaKnown RBP30.53■■■□□ 2.48
LIME1-204ENST00000476183 ANKARQ7Z5J8 1434 aa30.5■■■□□ 2.47
LIME1-204ENST00000476183 PHF8Q9UPP1 1060 aa30.5■■■□□ 2.47
LIME1-204ENST00000476183 WASLO00401 505 aaPredicted RBP30.49■■■□□ 2.47
LIME1-204ENST00000476183 PRR36Q9H6K5 1346 aa30.47■■■□□ 2.47
LIME1-204ENST00000476183 COL22A1Q8NFW1 1626 aaPredicted RBP30.47■■■□□ 2.47
LIME1-204ENST00000476183 TRPM1Q7Z4N2 1603 aa30.46■■■□□ 2.47
LIME1-204ENST00000476183 TULP4Q9NRJ4 1543 aa30.46■■■□□ 2.47
LIME1-204ENST00000476183 KRT28Q7Z3Y7 464 aa30.43■■■□□ 2.46
LIME1-204ENST00000476183 PMFBP1Q8TBY8 1022 aa30.43■■■□□ 2.46
LIME1-204ENST00000476183 EIF3AQ14152 1382 aaKnown RBP30.42■■■□□ 2.46
LIME1-204ENST00000476183 NBPF8Q3BBV2 869 aa30.41■■■□□ 2.46
LIME1-204ENST00000476183 ADAMTS2O95450 1211 aa30.4■■■□□ 2.46
LIME1-204ENST00000476183 SPATA31A3Q5VYP0 1347 aa30.4■■■□□ 2.46
LIME1-204ENST00000476183 ZNF772Q68DY9 489 aaPredicted RBP30.38■■■□□ 2.45
LIME1-204ENST00000476183 C8orf37Q96NL8 207 aa30.38■■■□□ 2.45
LIME1-204ENST00000476183 AFF2P51816 1311 aa30.38■■■□□ 2.45
LIME1-204ENST00000476183 ATP7BP35670 1465 aa30.38■■■□□ 2.45
LIME1-204ENST00000476183 CDK19Q9BWU1 502 aa30.37■■■□□ 2.45
LIME1-204ENST00000476183 CENPJQ9HC77 1338 aaPredicted RBP30.36■■■□□ 2.45
LIME1-204ENST00000476183 PSME1Q06323 249 aa30.35■■■□□ 2.45
LIME1-204ENST00000476183 NUDT16Q96DE0 195 aaKnown RBP30.35■■■□□ 2.45
LIME1-204ENST00000476183 ROCK2O75116 1388 aaKnown RBP30.35■■■□□ 2.45
LIME1-204ENST00000476183 TONSLQ96HA7 1378 aa30.35■■■□□ 2.45
LIME1-204ENST00000476183 TNS3Q68CZ2 1445 aa30.34■■■□□ 2.45
LIME1-204ENST00000476183 SBNO1A3KN83 1393 aa30.33■■■□□ 2.45
LIME1-204ENST00000476183 QRICH2Q9H0J4 1663 aa30.33■■■□□ 2.45
LIME1-204ENST00000476183 ITSN1Q15811 1721 aa30.31■■■□□ 2.44
LIME1-204ENST00000476183 TRPM3Q9HCF6 1732 aaPredicted RBP30.3■■■□□ 2.44
LIME1-204ENST00000476183 NGLY1Q96IV0 654 aa30.3■■■□□ 2.44
LIME1-204ENST00000476183 GPRASP1Q5JY77 1395 aa30.28■■■□□ 2.44
LIME1-204ENST00000476183 TOPAZ1Q8N9V7 1692 aa30.28■■■□□ 2.44
LIME1-204ENST00000476183 NGDNQ8NEJ9 315 aaKnown RBP30.27■■■□□ 2.44
LIME1-204ENST00000476183 PCGF6Q9BYE7 350 aa30.27■■■□□ 2.44
LIME1-204ENST00000476183 MARF1Q9Y4F3 1742 aaKnown RBP30.27■■■□□ 2.44
LIME1-204ENST00000476183 LMOD2Q6P5Q4 547 aa30.24■■■□□ 2.43
LIME1-204ENST00000476183 CCDC61Q9Y6R9 512 aa30.24■■■□□ 2.43
LIME1-204ENST00000476183 ARHGEF10O15013 1369 aa30.24■■■□□ 2.43
LIME1-204ENST00000476183 FNBP4Q8N3X1 1017 aaPredicted RBP30.23■■■□□ 2.43
LIME1-204ENST00000476183 CABLES1Q8TDN4 633 aa30.23■■■□□ 2.43
LIME1-204ENST00000476183 ALS2Q96Q42 1657 aa30.23■■■□□ 2.43
LIME1-204ENST00000476183 SRPK2P78362 688 aaKnown RBP30.22■■■□□ 2.43
LIME1-204ENST00000476183 CABP2Q9NPB3 220 aa30.22■■■□□ 2.43
LIME1-204ENST00000476183 RALGAPBQ86X10 1494 aa30.22■■■□□ 2.43
LIME1-204ENST00000476183 PLEKHG5O94827 1062 aa30.21■■■□□ 2.43
LIME1-204ENST00000476183 RXRBP28702 533 aa30.21■■■□□ 2.43
LIME1-204ENST00000476183 QTRT2Q9H974 415 aaKnown RBP30.21■■■□□ 2.43
LIME1-204ENST00000476183 ABCA3Q99758 1704 aa30.2■■■□□ 2.43
LIME1-204ENST00000476183 PLEKHG3A1L390 1219 aa30.2■■■□□ 2.43
LIME1-204ENST00000476183 USP21Q9UK80 565 aa30.2■■■□□ 2.43
LIME1-204ENST00000476183 POLR3AO14802 1390 aaPredicted RBP30.19■■■□□ 2.42
LIME1-204ENST00000476183 ACEP12821 1306 aa30.19■■■□□ 2.42
LIME1-204ENST00000476183 CARD11Q9BXL7 1154 aa30.18■■■□□ 2.42
LIME1-204ENST00000476183 BCL9LQ86UU0 1499 aa30.16■■■□□ 2.42
LIME1-204ENST00000476183 PPIP5K1Q6PFW1 1433 aa30.15■■■□□ 2.42
LIME1-204ENST00000476183 PAK3O75914 559 aaPredicted RBP30.15■■■□□ 2.42
LIME1-204ENST00000476183 EVC2Q86UK5 1308 aa30.14■■■□□ 2.42
LIME1-204ENST00000476183 HAP1P54257 671 aaPredicted RBP30.13■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms