RNA–Protein interactions for RNA: ENST00000475944.1

CDRT1-205, CMT1A duplicated region transcript 1, humanhuman

TSL 3

Gene CDRT1, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDRT1-205ENST00000475944 ANKRD30BQ9BXX2 1392 aa16.2■□□□□ 0.18
CDRT1-205ENST00000475944 NPHP3Q7Z494 1330 aa16.19■□□□□ 0.18
CDRT1-205ENST00000475944 ADGRF5Q8IZF2 1346 aa16.19■□□□□ 0.18
CDRT1-205ENST00000475944 RGL3Q3MIN7 710 aa16.18■□□□□ 0.18
CDRT1-205ENST00000475944 ESCO1Q5FWF5 840 aa16.18■□□□□ 0.18
CDRT1-205ENST00000475944 COL22A1Q8NFW1 1626 aaPredicted RBP16.18■□□□□ 0.18
CDRT1-205ENST00000475944 TECPR2O15040 1411 aa16.18■□□□□ 0.18
CDRT1-205ENST00000475944 SPATA31E1Q6ZUB1 1445 aa16.18■□□□□ 0.18
CDRT1-205ENST00000475944 IFT172Q9UG01 1749 aa16.17■□□□□ 0.18
CDRT1-205ENST00000475944 LRPPRCP42704 1394 aaKnown RBP16.16■□□□□ 0.18
CDRT1-205ENST00000475944 MPHOSPH9Q99550 1183 aa16.16■□□□□ 0.18
CDRT1-205ENST00000475944 USP21Q9UK80 565 aa16.16■□□□□ 0.18
CDRT1-205ENST00000475944 KNDC1Q76NI1 1749 aa16.15■□□□□ 0.18
CDRT1-205ENST00000475944 STK26Q9P289 416 aa16.15■□□□□ 0.18
CDRT1-205ENST00000475944 TRPC5Q9UL62 973 aaPredicted RBP16.15■□□□□ 0.18
CDRT1-205ENST00000475944 ABCC11Q96J66 1382 aa16.14■□□□□ 0.17
CDRT1-205ENST00000475944 PIK3C2GO75747 1445 aa16.14■□□□□ 0.17
CDRT1-205ENST00000475944 FNBP4Q8N3X1 1017 aaPredicted RBP16.14■□□□□ 0.17
CDRT1-205ENST00000475944 MYOM2P54296 1465 aa16.14■□□□□ 0.17
CDRT1-205ENST00000475944 PXDNQ92626 1479 aa16.14■□□□□ 0.17
CDRT1-205ENST00000475944 ACIN1Q9UKV3 1341 aaKnown RBP16.14■□□□□ 0.17
CDRT1-205ENST00000475944 FOXO3O43524 673 aa16.13■□□□□ 0.17
CDRT1-205ENST00000475944 WAPLQ7Z5K2 1190 aa16.13■□□□□ 0.17
CDRT1-205ENST00000475944 TMEM132EQ6IEE7 984 aa16.12■□□□□ 0.17
CDRT1-205ENST00000475944 ATAD2Q6PL18 1390 aa16.12■□□□□ 0.17
CDRT1-205ENST00000475944 NUTM2FA1L443 756 aa16.11■□□□□ 0.17
CDRT1-205ENST00000475944 ATRNO75882 1429 aa16.11■□□□□ 0.17
CDRT1-205ENST00000475944 YTHDC2Q9H6S0 1430 aaKnown RBP16.11■□□□□ 0.17
CDRT1-205ENST00000475944 XPCQ01831 940 aaPredicted RBP16.1■□□□□ 0.17
CDRT1-205ENST00000475944 KIF1AQ12756 1690 aa16.1■□□□□ 0.17
CDRT1-205ENST00000475944 FMN2Q9NZ56 1722 aa16.1■□□□□ 0.17
CDRT1-205ENST00000475944 MARF1Q9Y4F3 1742 aaKnown RBP16.1■□□□□ 0.17
CDRT1-205ENST00000475944 PLEKHH1Q9ULM0 1364 aa16.1■□□□□ 0.17
CDRT1-205ENST00000475944 SIRT1Q96EB6 747 aa16.07■□□□□ 0.16
CDRT1-205ENST00000475944 BCL9LQ86UU0 1499 aa16.06■□□□□ 0.16
CDRT1-205ENST00000475944 DHX57Q6P158 1386 aaKnown RBP16.06■□□□□ 0.16
CDRT1-205ENST00000475944 SPATA31A3Q5VYP0 1347 aa16.06■□□□□ 0.16
CDRT1-205ENST00000475944 C14orf93Q9H972 538 aaKnown RBP16.06■□□□□ 0.16
CDRT1-205ENST00000475944 NRXN1Q9ULB1 1477 aa16.05■□□□□ 0.16
CDRT1-205ENST00000475944 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.04■□□□□ 0.16
CDRT1-205ENST00000475944 CFAP70Q5T0N1 1121 aa16.03■□□□□ 0.16
CDRT1-205ENST00000475944 KRT28Q7Z3Y7 464 aa16.03■□□□□ 0.16
CDRT1-205ENST00000475944 GJD4Q96KN9 370 aaPredicted RBP16.03■□□□□ 0.16
CDRT1-205ENST00000475944 PSME1Q06323 249 aa16.02■□□□□ 0.16
CDRT1-205ENST00000475944 PHF8Q9UPP1 1060 aa16.02■□□□□ 0.16
CDRT1-205ENST00000475944 TNS3Q68CZ2 1445 aa16.02■□□□□ 0.15
CDRT1-205ENST00000475944 USP32Q8NFA0 1604 aa16.01■□□□□ 0.15
CDRT1-205ENST00000475944 SLIT2O94813 1529 aa16.01■□□□□ 0.15
CDRT1-205ENST00000475944 HAP1P54257 671 aaPredicted RBP16.01■□□□□ 0.15
CDRT1-205ENST00000475944 UNC5CLQ8IV45 518 aa16.01■□□□□ 0.15
CDRT1-205ENST00000475944 CCDC125Q86Z20 511 aa16■□□□□ 0.15
CDRT1-205ENST00000475944 PRAM1Q96QH2 718 aa16■□□□□ 0.15
CDRT1-205ENST00000475944 DLC1Q96QB1 1528 aa15.99■□□□□ 0.15
CDRT1-205ENST00000475944 SAFB2Q14151 953 aaKnown RBP eCLIP15.99■□□□□ 0.15
CDRT1-205ENST00000475944 RGPD8O14715 1765 aaPredicted RBP15.99■□□□□ 0.15
CDRT1-205ENST00000475944 RAB3GAP2Q9H2M9 1393 aa15.99■□□□□ 0.15
CDRT1-205ENST00000475944 RALGAPBQ86X10 1494 aa15.98■□□□□ 0.15
CDRT1-205ENST00000475944 ANKARQ7Z5J8 1434 aa15.98■□□□□ 0.15
CDRT1-205ENST00000475944 POGKQ9P215 609 aa15.98■□□□□ 0.15
CDRT1-205ENST00000475944 SBNO1A3KN83 1393 aa15.98■□□□□ 0.15
CDRT1-205ENST00000475944 GLI3P10071 1580 aa15.97■□□□□ 0.15
CDRT1-205ENST00000475944 ARHGEF10O15013 1369 aa15.97■□□□□ 0.15
CDRT1-205ENST00000475944 ADGRB2O60241 1585 aa15.96■□□□□ 0.15
CDRT1-205ENST00000475944 LMOD2Q6P5Q4 547 aa15.95■□□□□ 0.14
CDRT1-205ENST00000475944 ZRANB1Q9UGI0 708 aa15.95■□□□□ 0.14
CDRT1-205ENST00000475944 ADGRB1O14514 1584 aa15.95■□□□□ 0.14
CDRT1-205ENST00000475944 ABCA3Q99758 1704 aa15.94■□□□□ 0.14
CDRT1-205ENST00000475944 NWD2Q9ULI1 1742 aa15.94■□□□□ 0.14
CDRT1-205ENST00000475944 CABLES1Q8TDN4 633 aa15.94■□□□□ 0.14
CDRT1-205ENST00000475944 EIF3AQ14152 1382 aaKnown RBP15.94■□□□□ 0.14
CDRT1-205ENST00000475944 PLCH1Q4KWH8 1693 aa15.93■□□□□ 0.14
CDRT1-205ENST00000475944 PLEKHG5O94827 1062 aa15.93■□□□□ 0.14
CDRT1-205ENST00000475944 VPS72Q15906 364 aa15.93■□□□□ 0.14
CDRT1-205ENST00000475944 PMFBP1Q8TBY8 1022 aa15.93■□□□□ 0.14
CDRT1-205ENST00000475944 STAC3Q96MF2 364 aa15.92■□□□□ 0.14
CDRT1-205ENST00000475944 TRAK1Q9UPV9 953 aa15.92■□□□□ 0.14
CDRT1-205ENST00000475944 CCDC9Q9Y3X0 531 aaKnown RBP15.92■□□□□ 0.14
CDRT1-205ENST00000475944 BLMP54132 1417 aaPredicted RBP15.92■□□□□ 0.14
CDRT1-205ENST00000475944 GPRASP1Q5JY77 1395 aa15.91■□□□□ 0.14
CDRT1-205ENST00000475944 EP400Q96L91 3159 aa15.91■□□□□ 0.14
CDRT1-205ENST00000475944 TULP4Q9NRJ4 1543 aa15.9■□□□□ 0.14
CDRT1-205ENST00000475944 SEPT12Q8IYM1 358 aa15.9■□□□□ 0.14
CDRT1-205ENST00000475944 DCAF11Q8TEB1 546 aa15.9■□□□□ 0.14
CDRT1-205ENST00000475944 HIRIP3Q9BW71 556 aaPredicted RBP15.9■□□□□ 0.14
CDRT1-205ENST00000475944 KDM2AQ9Y2K7 1162 aa15.9■□□□□ 0.14
CDRT1-205ENST00000475944 MINK1Q8N4C8 1332 aaPredicted RBP15.9■□□□□ 0.14
CDRT1-205ENST00000475944 TRPM3Q9HCF6 1732 aaPredicted RBP15.89■□□□□ 0.13
CDRT1-205ENST00000475944 BRWD3Q6RI45 1802 aa15.89■□□□□ 0.13
CDRT1-205ENST00000475944 SF3B2Q13435 895 aaKnown RBP15.88■□□□□ 0.13
CDRT1-205ENST00000475944 ALS2Q96Q42 1657 aa15.87■□□□□ 0.13
CDRT1-205ENST00000475944 FAM83GA6ND36 823 aa15.87■□□□□ 0.13
CDRT1-205ENST00000475944 WASLO00401 505 aaPredicted RBP15.87■□□□□ 0.13
CDRT1-205ENST00000475944 ONECUT3O60422 494 aaPredicted RBP15.87■□□□□ 0.13
CDRT1-205ENST00000475944 PRR36Q9H6K5 1346 aa15.87■□□□□ 0.13
CDRT1-205ENST00000475944 NRAPQ86VF7 1730 aa15.85■□□□□ 0.13
CDRT1-205ENST00000475944 COL14A1Q05707 1796 aaKnown RBP15.85■□□□□ 0.13
CDRT1-205ENST00000475944 A0A0G2JS52 829 aa15.85■□□□□ 0.13
CDRT1-205ENST00000475944 HRCP23327 699 aa15.85■□□□□ 0.13
CDRT1-205ENST00000475944 MYT1Q01538 1121 aa15.85■□□□□ 0.13
CDRT1-205ENST00000475944 KRT27Q7Z3Y8 459 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms