RNA–Protein interactions for RNA: ENST00000474215.5

CKS1B-206, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 3

Gene CKS1B, Length 739 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-206ENST00000474215 LRRC59Q96AG4 307 aaKnown RBP16.28■□□□□ 0.2
CKS1B-206ENST00000474215 LAMC1P11047 1609 aa16.27■□□□□ 0.2
CKS1B-206ENST00000474215 SPATA31A6Q5VVP1 1343 aa16.27■□□□□ 0.2
CKS1B-206ENST00000474215 DDX17Q92841 729 aaKnown RBP16.27■□□□□ 0.2
CKS1B-206ENST00000474215 RGS17Q9UGC6 210 aaPredicted RBP16.27■□□□□ 0.2
CKS1B-206ENST00000474215 ESCO1Q5FWF5 840 aa16.25■□□□□ 0.19
CKS1B-206ENST00000474215 PRAM1Q96QH2 718 aa16.25■□□□□ 0.19
CKS1B-206ENST00000474215 CDC42BPGQ6DT37 1551 aa16.25■□□□□ 0.19
CKS1B-206ENST00000474215 KNDC1Q76NI1 1749 aa16.25■□□□□ 0.19
CKS1B-206ENST00000474215 POGKQ9P215 609 aa16.24■□□□□ 0.19
CKS1B-206ENST00000474215 NUTM2FA1L443 756 aa16.23■□□□□ 0.19
CKS1B-206ENST00000474215 TRAK1Q9UPV9 953 aa16.23■□□□□ 0.19
CKS1B-206ENST00000474215 NHSL1Q5SYE7 1610 aa16.23■□□□□ 0.19
CKS1B-206ENST00000474215 ADGRB1O14514 1584 aa16.22■□□□□ 0.19
CKS1B-206ENST00000474215 SAFB2Q14151 953 aaKnown RBP eCLIP16.22■□□□□ 0.19
CKS1B-206ENST00000474215 SOS2Q07890 1332 aaPredicted RBP16.21■□□□□ 0.19
CKS1B-206ENST00000474215 NUTM2BA6NNL0 878 aaPredicted RBP16.21■□□□□ 0.19
CKS1B-206ENST00000474215 NUTM2EB1AL46 878 aaPredicted RBP16.21■□□□□ 0.19
CKS1B-206ENST00000474215 NUTM2AQ8IVF1 878 aaPredicted RBP16.21■□□□□ 0.19
CKS1B-206ENST00000474215 DLC1Q96QB1 1528 aa16.2■□□□□ 0.18
CKS1B-206ENST00000474215 TRIM26Q12899 539 aaPredicted RBP16.2■□□□□ 0.18
CKS1B-206ENST00000474215 MEX3CQ5U5Q3 659 aaKnown RBP16.2■□□□□ 0.18
CKS1B-206ENST00000474215 SHPRHQ149N8 1683 aa16.2■□□□□ 0.18
CKS1B-206ENST00000474215 NPHP3Q7Z494 1330 aa16.19■□□□□ 0.18
CKS1B-206ENST00000474215 FOXO3O43524 673 aa16.19■□□□□ 0.18
CKS1B-206ENST00000474215 POTEAQ6S8J7 498 aa16.19■□□□□ 0.18
CKS1B-206ENST00000474215 LRP6O75581 1613 aa16.19■□□□□ 0.18
CKS1B-206ENST00000474215 PNPLA6Q8IY17 1366 aa16.18■□□□□ 0.18
CKS1B-206ENST00000474215 SIN3AQ96ST3 1273 aa16.18■□□□□ 0.18
CKS1B-206ENST00000474215 NEUROD1Q13562 356 aa16.16■□□□□ 0.18
CKS1B-206ENST00000474215 L3MBTL2Q969R5 705 aa16.16■□□□□ 0.18
CKS1B-206ENST00000474215 XPCQ01831 940 aaPredicted RBP16.15■□□□□ 0.18
CKS1B-206ENST00000474215 HIRIP3Q9BW71 556 aaPredicted RBP16.15■□□□□ 0.18
CKS1B-206ENST00000474215 FMN2Q9NZ56 1722 aa16.15■□□□□ 0.18
CKS1B-206ENST00000474215 MINK1Q8N4C8 1332 aaPredicted RBP16.15■□□□□ 0.18
CKS1B-206ENST00000474215 NBPF1Q3BBV0 1214 aa16.14■□□□□ 0.17
CKS1B-206ENST00000474215 ZNF772Q68DY9 489 aaPredicted RBP16.14■□□□□ 0.17
CKS1B-206ENST00000474215 PHF8Q9UPP1 1060 aa16.14■□□□□ 0.17
CKS1B-206ENST00000474215 PXDNQ92626 1479 aa16.13■□□□□ 0.17
CKS1B-206ENST00000474215 KRT28Q7Z3Y7 464 aa16.12■□□□□ 0.17
CKS1B-206ENST00000474215 WASLO00401 505 aaPredicted RBP16.11■□□□□ 0.17
CKS1B-206ENST00000474215 ANKARQ7Z5J8 1434 aa16.11■□□□□ 0.17
CKS1B-206ENST00000474215 ADAMTS2O95450 1211 aa16.1■□□□□ 0.17
CKS1B-206ENST00000474215 PSME1Q06323 249 aa16.1■□□□□ 0.17
CKS1B-206ENST00000474215 C8orf37Q96NL8 207 aa16.1■□□□□ 0.17
CKS1B-206ENST00000474215 ADGRB2O60241 1585 aa16.09■□□□□ 0.17
CKS1B-206ENST00000474215 KIAA1210Q9ULL0 1709 aa16.09■□□□□ 0.17
CKS1B-206ENST00000474215 AFF2P51816 1311 aa16.09■□□□□ 0.17
CKS1B-206ENST00000474215 SPATA31A3Q5VYP0 1347 aa16.09■□□□□ 0.17
CKS1B-206ENST00000474215 EIF3AQ14152 1382 aaKnown RBP16.09■□□□□ 0.17
CKS1B-206ENST00000474215 PMFBP1Q8TBY8 1022 aa16.08■□□□□ 0.16
CKS1B-206ENST00000474215 NGLY1Q96IV0 654 aa16.08■□□□□ 0.16
CKS1B-206ENST00000474215 KIF1AQ12756 1690 aa16.08■□□□□ 0.16
CKS1B-206ENST00000474215 PRR36Q9H6K5 1346 aa16.07■□□□□ 0.16
CKS1B-206ENST00000474215 CDK19Q9BWU1 502 aa16.06■□□□□ 0.16
CKS1B-206ENST00000474215 RGPD8O14715 1765 aaPredicted RBP16.05■□□□□ 0.16
CKS1B-206ENST00000474215 ARHGEF28Q8N1W1 1705 aaKnown RBP16.05■□□□□ 0.16
CKS1B-206ENST00000474215 RXRBP28702 533 aa16.05■□□□□ 0.16
CKS1B-206ENST00000474215 USP32Q8NFA0 1604 aa16.05■□□□□ 0.16
CKS1B-206ENST00000474215 COL22A1Q8NFW1 1626 aaPredicted RBP16.05■□□□□ 0.16
CKS1B-206ENST00000474215 TULP4Q9NRJ4 1543 aa16.04■□□□□ 0.16
CKS1B-206ENST00000474215 NUDT16Q96DE0 195 aaKnown RBP16.04■□□□□ 0.16
CKS1B-206ENST00000474215 QTRT2Q9H974 415 aaKnown RBP16.04■□□□□ 0.16
CKS1B-206ENST00000474215 SBNO1A3KN83 1393 aa16.03■□□□□ 0.16
CKS1B-206ENST00000474215 CENPJQ9HC77 1338 aaPredicted RBP16.03■□□□□ 0.16
CKS1B-206ENST00000474215 GPRASP1Q5JY77 1395 aa16.02■□□□□ 0.16
CKS1B-206ENST00000474215 LMOD2Q6P5Q4 547 aa16.02■□□□□ 0.16
CKS1B-206ENST00000474215 FNBP4Q8N3X1 1017 aaPredicted RBP16.02■□□□□ 0.16
CKS1B-206ENST00000474215 NGDNQ8NEJ9 315 aaKnown RBP16.02■□□□□ 0.16
CKS1B-206ENST00000474215 TNS3Q68CZ2 1445 aa16.02■□□□□ 0.15
CKS1B-206ENST00000474215 NBPF8Q3BBV2 869 aa16.01■□□□□ 0.15
CKS1B-206ENST00000474215 USP21Q9UK80 565 aa16.01■□□□□ 0.15
CKS1B-206ENST00000474215 CCDC61Q9Y6R9 512 aa16■□□□□ 0.15
CKS1B-206ENST00000474215 ARHGEF10O15013 1369 aa16■□□□□ 0.15
CKS1B-206ENST00000474215 ROCK2O75116 1388 aaKnown RBP16■□□□□ 0.15
CKS1B-206ENST00000474215 HAP1P54257 671 aaPredicted RBP15.99■□□□□ 0.15
CKS1B-206ENST00000474215 RBM6P78332 1123 aaKnown RBP15.99■□□□□ 0.15
CKS1B-206ENST00000474215 CABLES1Q8TDN4 633 aa15.99■□□□□ 0.15
CKS1B-206ENST00000474215 TONSLQ96HA7 1378 aa15.99■□□□□ 0.15
CKS1B-206ENST00000474215 ATP7BP35670 1465 aa15.98■□□□□ 0.15
CKS1B-206ENST00000474215 SRPK2P78362 688 aaKnown RBP15.98■□□□□ 0.15
CKS1B-206ENST00000474215 TRPM1Q7Z4N2 1603 aa15.97■□□□□ 0.15
CKS1B-206ENST00000474215 PLEKHG3A1L390 1219 aa15.97■□□□□ 0.15
CKS1B-206ENST00000474215 PLEKHG5O94827 1062 aa15.97■□□□□ 0.15
CKS1B-206ENST00000474215 TRPC5Q9UL62 973 aaPredicted RBP15.97■□□□□ 0.15
CKS1B-206ENST00000474215 PAK3O75914 559 aaPredicted RBP15.96■□□□□ 0.15
CKS1B-206ENST00000474215 ACEP12821 1306 aa15.95■□□□□ 0.14
CKS1B-206ENST00000474215 CABP2Q9NPB3 220 aa15.95■□□□□ 0.14
CKS1B-206ENST00000474215 BCL9LQ86UU0 1499 aa15.95■□□□□ 0.14
CKS1B-206ENST00000474215 CDK12Q9NYV4 1490 aaPredicted RBP15.95■□□□□ 0.14
CKS1B-206ENST00000474215 POLR3AO14802 1390 aaPredicted RBP15.94■□□□□ 0.14
CKS1B-206ENST00000474215 CARD11Q9BXL7 1154 aa15.93■□□□□ 0.14
CKS1B-206ENST00000474215 ATRNO75882 1429 aa15.93■□□□□ 0.14
CKS1B-206ENST00000474215 EVC2Q86UK5 1308 aa15.93■□□□□ 0.14
CKS1B-206ENST00000474215 ITSN1Q15811 1721 aa15.92■□□□□ 0.14
CKS1B-206ENST00000474215 TRPM3Q9HCF6 1732 aaPredicted RBP15.92■□□□□ 0.14
CKS1B-206ENST00000474215 UNC5CLQ8IV45 518 aa15.92■□□□□ 0.14
CKS1B-206ENST00000474215 FAM83GA6ND36 823 aa15.91■□□□□ 0.14
CKS1B-206ENST00000474215 CABP1Q9NZU7 370 aa15.91■□□□□ 0.14
CKS1B-206ENST00000474215 QRICH2Q9H0J4 1663 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms