RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 PCGF6Q9BYE7 350 aa20.47■□□□□ 0.87
VAMP4-203ENST00000474047 PHLPP1O60346 1717 aa20.47■□□□□ 0.87
VAMP4-203ENST00000474047 PRAM1Q96QH2 718 aa20.47■□□□□ 0.87
VAMP4-203ENST00000474047 PLEKHH1Q9ULM0 1364 aa20.47■□□□□ 0.87
VAMP4-203ENST00000474047 C1orf167Q5SNV9 1468 aa20.43■□□□□ 0.86
VAMP4-203ENST00000474047 NUTM2FA1L443 756 aa20.43■□□□□ 0.86
VAMP4-203ENST00000474047 ADGRB1O14514 1584 aa20.43■□□□□ 0.86
VAMP4-203ENST00000474047 ESCO1Q5FWF5 840 aa20.41■□□□□ 0.86
VAMP4-203ENST00000474047 ORAI2Q96SN7 254 aa20.41■□□□□ 0.86
VAMP4-203ENST00000474047 DLC1Q96QB1 1528 aa20.41■□□□□ 0.86
VAMP4-203ENST00000474047 CDC42BPGQ6DT37 1551 aa20.4■□□□□ 0.86
VAMP4-203ENST00000474047 PHF23Q9BUL5 403 aaPredicted RBP20.4■□□□□ 0.86
VAMP4-203ENST00000474047 JCADQ9P266 1359 aa20.39■□□□□ 0.85
VAMP4-203ENST00000474047 AHDC1Q5TGY3 1603 aaPredicted RBP20.38■□□□□ 0.85
VAMP4-203ENST00000474047 TONSLQ96HA7 1378 aa20.38■□□□□ 0.85
VAMP4-203ENST00000474047 NBPF1Q3BBV0 1214 aa20.38■□□□□ 0.85
VAMP4-203ENST00000474047 DDX17Q92841 729 aaKnown RBP20.38■□□□□ 0.85
VAMP4-203ENST00000474047 KIAA1210Q9ULL0 1709 aa20.38■□□□□ 0.85
VAMP4-203ENST00000474047 MED1Q15648 1581 aaPredicted RBP20.37■□□□□ 0.85
VAMP4-203ENST00000474047 MINK1Q8N4C8 1332 aaPredicted RBP20.37■□□□□ 0.85
VAMP4-203ENST00000474047 LRRC59Q96AG4 307 aaKnown RBP20.36■□□□□ 0.85
VAMP4-203ENST00000474047 HIRIP3Q9BW71 556 aaPredicted RBP20.36■□□□□ 0.85
VAMP4-203ENST00000474047 COL16A1Q07092 1604 aaPredicted RBP20.36■□□□□ 0.85
VAMP4-203ENST00000474047 NHSL1Q5SYE7 1610 aa20.33■□□□□ 0.84
VAMP4-203ENST00000474047 FMN2Q9NZ56 1722 aa20.32■□□□□ 0.84
VAMP4-203ENST00000474047 NPHP3Q7Z494 1330 aa20.31■□□□□ 0.84
VAMP4-203ENST00000474047 FOXO3O43524 673 aa20.31■□□□□ 0.84
VAMP4-203ENST00000474047 SPATA31A6Q5VVP1 1343 aa20.3■□□□□ 0.84
VAMP4-203ENST00000474047 MEX3CQ5U5Q3 659 aaKnown RBP20.3■□□□□ 0.84
VAMP4-203ENST00000474047 ARHGEF28Q8N1W1 1705 aaKnown RBP20.3■□□□□ 0.84
VAMP4-203ENST00000474047 ROCK2O75116 1388 aaKnown RBP20.29■□□□□ 0.84
VAMP4-203ENST00000474047 NUTM2BA6NNL0 878 aaPredicted RBP20.29■□□□□ 0.84
VAMP4-203ENST00000474047 NUTM2EB1AL46 878 aaPredicted RBP20.29■□□□□ 0.84
VAMP4-203ENST00000474047 WASLO00401 505 aaPredicted RBP20.29■□□□□ 0.84
VAMP4-203ENST00000474047 NUTM2AQ8IVF1 878 aaPredicted RBP20.29■□□□□ 0.84
VAMP4-203ENST00000474047 EIF3AQ14152 1382 aaKnown RBP20.29■□□□□ 0.84
VAMP4-203ENST00000474047 PHF8Q9UPP1 1060 aa20.28■□□□□ 0.84
VAMP4-203ENST00000474047 SOS2Q07890 1332 aaPredicted RBP20.28■□□□□ 0.84
VAMP4-203ENST00000474047 XPCQ01831 940 aaPredicted RBP20.27■□□□□ 0.84
VAMP4-203ENST00000474047 CENPJQ9HC77 1338 aaPredicted RBP20.26■□□□□ 0.83
VAMP4-203ENST00000474047 ADGRB2O60241 1585 aa20.26■□□□□ 0.83
VAMP4-203ENST00000474047 NBPF8Q3BBV2 869 aa20.26■□□□□ 0.83
VAMP4-203ENST00000474047 TRPM1Q7Z4N2 1603 aa20.26■□□□□ 0.83
VAMP4-203ENST00000474047 RGPD8O14715 1765 aaPredicted RBP20.25■□□□□ 0.83
VAMP4-203ENST00000474047 SHPRHQ149N8 1683 aa20.25■□□□□ 0.83
VAMP4-203ENST00000474047 ANKARQ7Z5J8 1434 aa20.25■□□□□ 0.83
VAMP4-203ENST00000474047 KIF1AQ12756 1690 aa20.24■□□□□ 0.83
VAMP4-203ENST00000474047 PSME1Q06323 249 aa20.24■□□□□ 0.83
VAMP4-203ENST00000474047 PMFBP1Q8TBY8 1022 aa20.24■□□□□ 0.83
VAMP4-203ENST00000474047 CDK19Q9BWU1 502 aa20.24■□□□□ 0.83
VAMP4-203ENST00000474047 KRT28Q7Z3Y7 464 aa20.23■□□□□ 0.83
VAMP4-203ENST00000474047 CCER1Q8TC90 406 aaPredicted RBP20.23■□□□□ 0.83
VAMP4-203ENST00000474047 PNPLA6Q8IY17 1366 aa20.23■□□□□ 0.83
VAMP4-203ENST00000474047 CARD11Q9BXL7 1154 aa20.22■□□□□ 0.83
VAMP4-203ENST00000474047 CLSPNQ9HAW4 1339 aa20.21■□□□□ 0.83
VAMP4-203ENST00000474047 TULP4Q9NRJ4 1543 aa20.21■□□□□ 0.83
VAMP4-203ENST00000474047 SRPK2P78362 688 aaKnown RBP20.2■□□□□ 0.82
VAMP4-203ENST00000474047 NUDT16Q96DE0 195 aaKnown RBP20.2■□□□□ 0.82
VAMP4-203ENST00000474047 NGDNQ8NEJ9 315 aaKnown RBP20.19■□□□□ 0.82
VAMP4-203ENST00000474047 PRR36Q9H6K5 1346 aa20.19■□□□□ 0.82
VAMP4-203ENST00000474047 PXDNQ92626 1479 aa20.19■□□□□ 0.82
VAMP4-203ENST00000474047 LMOD2Q6P5Q4 547 aa20.19■□□□□ 0.82
VAMP4-203ENST00000474047 USP32Q8NFA0 1604 aa20.18■□□□□ 0.82
VAMP4-203ENST00000474047 LRP6O75581 1613 aa20.18■□□□□ 0.82
VAMP4-203ENST00000474047 GPRASP1Q5JY77 1395 aa20.17■□□□□ 0.82
VAMP4-203ENST00000474047 ADAMTS2O95450 1211 aa20.16■□□□□ 0.82
VAMP4-203ENST00000474047 QRICH2Q9H0J4 1663 aa20.16■□□□□ 0.82
VAMP4-203ENST00000474047 SPATA31A3Q5VYP0 1347 aa20.15■□□□□ 0.82
VAMP4-203ENST00000474047 EVC2Q86UK5 1308 aa20.15■□□□□ 0.82
VAMP4-203ENST00000474047 RGS17Q9UGC6 210 aaPredicted RBP20.15■□□□□ 0.82
VAMP4-203ENST00000474047 CCDC61Q9Y6R9 512 aa20.15■□□□□ 0.82
VAMP4-203ENST00000474047 C8orf37Q96NL8 207 aa20.14■□□□□ 0.81
VAMP4-203ENST00000474047 CABP2Q9NPB3 220 aa20.14■□□□□ 0.81
VAMP4-203ENST00000474047 TIMELESSQ9UNS1 1208 aa20.14■□□□□ 0.81
VAMP4-203ENST00000474047 RALGAPBQ86X10 1494 aa20.14■□□□□ 0.81
VAMP4-203ENST00000474047 PLEKHG5O94827 1062 aa20.13■□□□□ 0.81
VAMP4-203ENST00000474047 HAP1P54257 671 aaPredicted RBP20.13■□□□□ 0.81
VAMP4-203ENST00000474047 ZNF772Q68DY9 489 aaPredicted RBP20.13■□□□□ 0.81
VAMP4-203ENST00000474047 ITSN1Q15811 1721 aa20.13■□□□□ 0.81
VAMP4-203ENST00000474047 ATP7BP35670 1465 aa20.12■□□□□ 0.81
VAMP4-203ENST00000474047 PAK3O75914 559 aaPredicted RBP20.12■□□□□ 0.81
VAMP4-203ENST00000474047 NGLY1Q96IV0 654 aa20.12■□□□□ 0.81
VAMP4-203ENST00000474047 SBNO1A3KN83 1393 aa20.12■□□□□ 0.81
VAMP4-203ENST00000474047 TNS3Q68CZ2 1445 aa20.1■□□□□ 0.81
VAMP4-203ENST00000474047 AFF2P51816 1311 aa20.09■□□□□ 0.81
VAMP4-203ENST00000474047 POTEAQ6S8J7 498 aa20.09■□□□□ 0.81
VAMP4-203ENST00000474047 ARHGEF10O15013 1369 aa20.09■□□□□ 0.81
VAMP4-203ENST00000474047 COL22A1Q8NFW1 1626 aaPredicted RBP20.08■□□□□ 0.81
VAMP4-203ENST00000474047 ACEP12821 1306 aa20.08■□□□□ 0.8
VAMP4-203ENST00000474047 PLEKHG3A1L390 1219 aa20.07■□□□□ 0.8
VAMP4-203ENST00000474047 PPIP5K1Q6PFW1 1433 aa20.06■□□□□ 0.8
VAMP4-203ENST00000474047 CABLES1Q8TDN4 633 aa20.05■□□□□ 0.8
VAMP4-203ENST00000474047 CABP1Q9NZU7 370 aa20.05■□□□□ 0.8
VAMP4-203ENST00000474047 TOPAZ1Q8N9V7 1692 aa20.03■□□□□ 0.8
VAMP4-203ENST00000474047 POLR3AO14802 1390 aaPredicted RBP20.03■□□□□ 0.8
VAMP4-203ENST00000474047 USP21Q9UK80 565 aa20.02■□□□□ 0.8
VAMP4-203ENST00000474047 ST20-MTHFSA0A0A6YYL1 179 aa20.02■□□□□ 0.79
VAMP4-203ENST00000474047 SBNO2Q9Y2G9 1366 aa20.01■□□□□ 0.79
VAMP4-203ENST00000474047 QTRT2Q9H974 415 aaKnown RBP20.01■□□□□ 0.79
VAMP4-203ENST00000474047 ATAD2Q6PL18 1390 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms