RNA–Protein interactions for RNA: ENST00000473969.6

USF1-205, Transcript of upstream transcription factor 1, humanhuman

TSL 5

Gene USF1, Length 1,092 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-205ENST00000473969 NBPF1Q3BBV0 1214 aa19.64■□□□□ 0.73
USF1-205ENST00000473969 ADGRB1O14514 1584 aa19.64■□□□□ 0.73
USF1-205ENST00000473969 KNDC1Q76NI1 1749 aa19.64■□□□□ 0.73
USF1-205ENST00000473969 PLEKHH1Q9ULM0 1364 aa19.63■□□□□ 0.73
USF1-205ENST00000473969 DLC1Q96QB1 1528 aa19.62■□□□□ 0.73
USF1-205ENST00000473969 KIAA1210Q9ULL0 1709 aa19.61■□□□□ 0.73
USF1-205ENST00000473969 ROCK2O75116 1388 aaKnown RBP19.6■□□□□ 0.73
USF1-205ENST00000473969 MST1RQ04912 1400 aa19.59■□□□□ 0.73
USF1-205ENST00000473969 NALCNQ8IZF0 1738 aa19.59■□□□□ 0.73
USF1-205ENST00000473969 BRINP3Q76B58 766 aa19.59■□□□□ 0.73
USF1-205ENST00000473969 TIMELESSQ9UNS1 1208 aa19.59■□□□□ 0.73
USF1-205ENST00000473969 ROBO1Q9Y6N7 1651 aa19.59■□□□□ 0.73
USF1-205ENST00000473969 MINK1Q8N4C8 1332 aaPredicted RBP19.57■□□□□ 0.72
USF1-205ENST00000473969 NUTM2FA1L443 756 aa19.57■□□□□ 0.72
USF1-205ENST00000473969 NBPF8Q3BBV2 869 aa19.57■□□□□ 0.72
USF1-205ENST00000473969 C1orf167Q5SNV9 1468 aa19.56■□□□□ 0.72
USF1-205ENST00000473969 ESCO1Q5FWF5 840 aa19.56■□□□□ 0.72
USF1-205ENST00000473969 CDC42BPGQ6DT37 1551 aa19.55■□□□□ 0.72
USF1-205ENST00000473969 HIRIP3Q9BW71 556 aaPredicted RBP19.55■□□□□ 0.72
USF1-205ENST00000473969 CARD11Q9BXL7 1154 aa19.54■□□□□ 0.72
USF1-205ENST00000473969 ORAI2Q96SN7 254 aa19.53■□□□□ 0.72
USF1-205ENST00000473969 CENPJQ9HC77 1338 aaPredicted RBP19.52■□□□□ 0.72
USF1-205ENST00000473969 EIF3AQ14152 1382 aaKnown RBP19.52■□□□□ 0.72
USF1-205ENST00000473969 TRPM1Q7Z4N2 1603 aa19.51■□□□□ 0.71
USF1-205ENST00000473969 WASLO00401 505 aaPredicted RBP19.51■□□□□ 0.71
USF1-205ENST00000473969 PHLPP1O60346 1717 aa19.48■□□□□ 0.71
USF1-205ENST00000473969 ARHGEF28Q8N1W1 1705 aaKnown RBP19.48■□□□□ 0.71
USF1-205ENST00000473969 LRRC59Q96AG4 307 aaKnown RBP19.47■□□□□ 0.71
USF1-205ENST00000473969 NPHP3Q7Z494 1330 aa19.47■□□□□ 0.71
USF1-205ENST00000473969 RALGAPBQ86X10 1494 aa19.47■□□□□ 0.71
USF1-205ENST00000473969 GPRASP1Q5JY77 1395 aa19.46■□□□□ 0.71
USF1-205ENST00000473969 FOXO3O43524 673 aa19.46■□□□□ 0.71
USF1-205ENST00000473969 DDX17Q92841 729 aaKnown RBP19.46■□□□□ 0.71
USF1-205ENST00000473969 CDK19Q9BWU1 502 aa19.46■□□□□ 0.71
USF1-205ENST00000473969 PHF8Q9UPP1 1060 aa19.46■□□□□ 0.71
USF1-205ENST00000473969 AHDC1Q5TGY3 1603 aaPredicted RBP19.46■□□□□ 0.71
USF1-205ENST00000473969 JCADQ9P266 1359 aa19.45■□□□□ 0.7
USF1-205ENST00000473969 ANKARQ7Z5J8 1434 aa19.45■□□□□ 0.7
USF1-205ENST00000473969 FMN2Q9NZ56 1722 aa19.45■□□□□ 0.7
USF1-205ENST00000473969 ADGRB2O60241 1585 aa19.44■□□□□ 0.7
USF1-205ENST00000473969 SRPK2P78362 688 aaKnown RBP19.44■□□□□ 0.7
USF1-205ENST00000473969 NUDT16Q96DE0 195 aaKnown RBP19.42■□□□□ 0.7
USF1-205ENST00000473969 EVC2Q86UK5 1308 aa19.42■□□□□ 0.7
USF1-205ENST00000473969 PSME1Q06323 249 aa19.41■□□□□ 0.7
USF1-205ENST00000473969 PMFBP1Q8TBY8 1022 aa19.41■□□□□ 0.7
USF1-205ENST00000473969 TULP4Q9NRJ4 1543 aa19.41■□□□□ 0.7
USF1-205ENST00000473969 SOS2Q07890 1332 aaPredicted RBP19.4■□□□□ 0.7
USF1-205ENST00000473969 XPCQ01831 940 aaPredicted RBP19.39■□□□□ 0.69
USF1-205ENST00000473969 KRT28Q7Z3Y7 464 aa19.39■□□□□ 0.69
USF1-205ENST00000473969 NGDNQ8NEJ9 315 aaKnown RBP19.39■□□□□ 0.69
USF1-205ENST00000473969 COL16A1Q07092 1604 aaPredicted RBP19.39■□□□□ 0.69
USF1-205ENST00000473969 SLC24A1O60721 1099 aa19.38■□□□□ 0.69
USF1-205ENST00000473969 NHSL1Q5SYE7 1610 aa19.38■□□□□ 0.69
USF1-205ENST00000473969 SPATA31A6Q5VVP1 1343 aa19.38■□□□□ 0.69
USF1-205ENST00000473969 PHF23Q9BUL5 403 aaPredicted RBP19.38■□□□□ 0.69
USF1-205ENST00000473969 CCDC61Q9Y6R9 512 aa19.38■□□□□ 0.69
USF1-205ENST00000473969 KIF1AQ12756 1690 aa19.37■□□□□ 0.69
USF1-205ENST00000473969 PRR36Q9H6K5 1346 aa19.37■□□□□ 0.69
USF1-205ENST00000473969 CABP2Q9NPB3 220 aa19.37■□□□□ 0.69
USF1-205ENST00000473969 QRICH2Q9H0J4 1663 aa19.36■□□□□ 0.69
USF1-205ENST00000473969 NUTM2BA6NNL0 878 aaPredicted RBP19.35■□□□□ 0.69
USF1-205ENST00000473969 NUTM2EB1AL46 878 aaPredicted RBP19.35■□□□□ 0.69
USF1-205ENST00000473969 MEX3CQ5U5Q3 659 aaKnown RBP19.35■□□□□ 0.69
USF1-205ENST00000473969 NUTM2AQ8IVF1 878 aaPredicted RBP19.35■□□□□ 0.69
USF1-205ENST00000473969 ST20-MTHFSA0A0A6YYL1 179 aa19.33■□□□□ 0.68
USF1-205ENST00000473969 LMOD2Q6P5Q4 547 aa19.33■□□□□ 0.68
USF1-205ENST00000473969 RGPD8O14715 1765 aaPredicted RBP19.32■□□□□ 0.68
USF1-205ENST00000473969 ATP7BP35670 1465 aa19.32■□□□□ 0.68
USF1-205ENST00000473969 USP32Q8NFA0 1604 aa19.32■□□□□ 0.68
USF1-205ENST00000473969 PNPLA6Q8IY17 1366 aa19.32■□□□□ 0.68
USF1-205ENST00000473969 USP47Q96K76 1375 aa19.32■□□□□ 0.68
USF1-205ENST00000473969 SBNO2Q9Y2G9 1366 aa19.32■□□□□ 0.68
USF1-205ENST00000473969 PXDNQ92626 1479 aa19.31■□□□□ 0.68
USF1-205ENST00000473969 MED1Q15648 1581 aaPredicted RBP19.31■□□□□ 0.68
USF1-205ENST00000473969 PLEKHG3A1L390 1219 aa19.3■□□□□ 0.68
USF1-205ENST00000473969 PAK3O75914 559 aaPredicted RBP19.3■□□□□ 0.68
USF1-205ENST00000473969 ACEP12821 1306 aa19.29■□□□□ 0.68
USF1-205ENST00000473969 SPATA31A3Q5VYP0 1347 aa19.29■□□□□ 0.68
USF1-205ENST00000473969 PPIP5K1Q6PFW1 1433 aa19.29■□□□□ 0.68
USF1-205ENST00000473969 CABP1Q9NZU7 370 aa19.29■□□□□ 0.68
USF1-205ENST00000473969 SHPRHQ149N8 1683 aa19.29■□□□□ 0.68
USF1-205ENST00000473969 SBNO1A3KN83 1393 aa19.29■□□□□ 0.68
USF1-205ENST00000473969 ATAD2Q6PL18 1390 aa19.29■□□□□ 0.68
USF1-205ENST00000473969 ITSN1Q15811 1721 aa19.28■□□□□ 0.68
USF1-205ENST00000473969 HAP1P54257 671 aaPredicted RBP19.28■□□□□ 0.68
USF1-205ENST00000473969 TMF1P82094 1093 aa19.27■□□□□ 0.68
USF1-205ENST00000473969 ARHGEF10O15013 1369 aa19.26■□□□□ 0.67
USF1-205ENST00000473969 TNS3Q68CZ2 1445 aa19.25■□□□□ 0.67
USF1-205ENST00000473969 POLR3AO14802 1390 aaPredicted RBP19.25■□□□□ 0.67
USF1-205ENST00000473969 EIF4G2P78344 907 aaKnown RBP eCLIP19.25■□□□□ 0.67
USF1-205ENST00000473969 TMC1Q8TDI8 760 aa19.25■□□□□ 0.67
USF1-205ENST00000473969 PLEKHG5O94827 1062 aa19.24■□□□□ 0.67
USF1-205ENST00000473969 ADAMTS2O95450 1211 aa19.24■□□□□ 0.67
USF1-205ENST00000473969 CDCA8Q53HL2 280 aa19.24■□□□□ 0.67
USF1-205ENST00000473969 PUS7Q96PZ0 661 aaKnown RBP19.24■□□□□ 0.67
USF1-205ENST00000473969 TESK2Q96S53 571 aa19.24■□□□□ 0.67
USF1-205ENST00000473969 ZNF692Q9BU19 519 aaPredicted RBP19.23■□□□□ 0.67
USF1-205ENST00000473969 C8orf37Q96NL8 207 aa19.21■□□□□ 0.67
USF1-205ENST00000473969 TOPAZ1Q8N9V7 1692 aa19.2■□□□□ 0.66
USF1-205ENST00000473969 HDGFL2Q7Z4V5 671 aaPredicted RBP19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms