RNA–Protein interactions for RNA: ENST00000473961.5

BRCA1-212, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 958 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-212ENST00000473961 SMPD1P17405 629 aa8.22□□□□□ -1.09
BRCA1-212ENST00000473961 SLC16A10Q8TF71 515 aa8.22□□□□□ -1.09
BRCA1-212ENST00000473961 MINK1Q8N4C8 1332 aaPredicted RBP8.22□□□□□ -1.09
BRCA1-212ENST00000473961 NUTM2FA1L443 756 aa8.21□□□□□ -1.1
BRCA1-212ENST00000473961 TRIM66O15016 1216 aa8.21□□□□□ -1.1
BRCA1-212ENST00000473961 PDE4DQ08499 809 aa8.21□□□□□ -1.1
BRCA1-212ENST00000473961 KDM4CQ9H3R0 1056 aa8.21□□□□□ -1.1
BRCA1-212ENST00000473961 TTC24A2A3L6 582 aaPredicted RBP8.2□□□□□ -1.1
BRCA1-212ENST00000473961 MAP2K5Q13163 448 aa8.19□□□□□ -1.1
BRCA1-212ENST00000473961 KIFC2Q96AC6 838 aa8.19□□□□□ -1.1
BRCA1-212ENST00000473961 GPBP1L1Q9HC44 474 aaPredicted RBP8.19□□□□□ -1.1
BRCA1-212ENST00000473961 FCHSD2O94868 740 aa8.18□□□□□ -1.1
BRCA1-212ENST00000473961 CD2BP2O95400 341 aaKnown RBP8.18□□□□□ -1.1
BRCA1-212ENST00000473961 HIC1Q14526 733 aa8.18□□□□□ -1.1
BRCA1-212ENST00000473961 NXF1Q9UBU9 619 aaKnown RBP8.18□□□□□ -1.1
BRCA1-212ENST00000473961 DNAJB2P25686 324 aa8.17□□□□□ -1.1
BRCA1-212ENST00000473961 KCTD17Q8N5Z5 321 aa8.17□□□□□ -1.1
BRCA1-212ENST00000473961 IL27Q8NEV9 243 aa8.17□□□□□ -1.1
BRCA1-212ENST00000473961 DDRGK1Q96HY6 314 aa8.17□□□□□ -1.1
BRCA1-212ENST00000473961 FCF1Q9Y324 198 aaKnown RBP8.17□□□□□ -1.1
BRCA1-212ENST00000473961 GNPATO15228 680 aa8.16□□□□□ -1.1
BRCA1-212ENST00000473961 SCUBE3Q8IX30 993 aa8.16□□□□□ -1.1
BRCA1-212ENST00000473961 IRF7Q92985 503 aa8.16□□□□□ -1.1
BRCA1-212ENST00000473961 SPSB2Q99619 263 aa8.16□□□□□ -1.1
BRCA1-212ENST00000473961 TMEM134Q9H6X4 195 aa8.16□□□□□ -1.1
BRCA1-212ENST00000473961 SLC10A3P09131 477 aa8.15□□□□□ -1.1
BRCA1-212ENST00000473961 GSK3AP49840 483 aa8.15□□□□□ -1.1
BRCA1-212ENST00000473961 HOMEZQ8IX15 550 aa8.15□□□□□ -1.1
BRCA1-212ENST00000473961 ERBB4Q15303 1308 aa8.14□□□□□ -1.11
BRCA1-212ENST00000473961 IRF6O14896 467 aa8.14□□□□□ -1.11
BRCA1-212ENST00000473961 GPR37O15354 613 aa8.14□□□□□ -1.11
BRCA1-212ENST00000473961 SNIP1Q8TAD8 396 aaKnown RBP8.14□□□□□ -1.11
BRCA1-212ENST00000473961 CCDC102AQ96A19 550 aa8.14□□□□□ -1.11
BRCA1-212ENST00000473961 J3QL48 77 aa8.13□□□□□ -1.11
BRCA1-212ENST00000473961 AMHR2Q16671 573 aa8.13□□□□□ -1.11
BRCA1-212ENST00000473961 NPAS3Q8IXF0 933 aa8.13□□□□□ -1.11
BRCA1-212ENST00000473961 H3BM21 787 aa8.12□□□□□ -1.11
BRCA1-212ENST00000473961 WNT7AO00755 349 aa8.12□□□□□ -1.11
BRCA1-212ENST00000473961 KCNMA1Q12791 1236 aa8.12□□□□□ -1.11
BRCA1-212ENST00000473961 HPS1Q92902 700 aa8.12□□□□□ -1.11
BRCA1-212ENST00000473961 VEGFBP49765 207 aa8.11□□□□□ -1.11
BRCA1-212ENST00000473961 PUS10Q3MIT2 529 aaKnown RBP8.11□□□□□ -1.11
BRCA1-212ENST00000473961 TTLL12Q14166 644 aaPredicted RBP8.1□□□□□ -1.11
BRCA1-212ENST00000473961 RCCD1A6NED2 376 aa8.07□□□□□ -1.12
BRCA1-212ENST00000473961 MRGPRX2Q96LB1 330 aa8.07□□□□□ -1.12
BRCA1-212ENST00000473961 PTGDRQ13258 359 aa8.06□□□□□ -1.12
BRCA1-212ENST00000473961 PARP9Q8IXQ6 854 aa8.06□□□□□ -1.12
BRCA1-212ENST00000473961 RBM46Q8TBY0 533 aaKnown RBP8.06□□□□□ -1.12
BRCA1-212ENST00000473961 THAP11Q96EK4 314 aa8.06□□□□□ -1.12
BRCA1-212ENST00000473961 FAM117AQ9C073 453 aa8.06□□□□□ -1.12
BRCA1-212ENST00000473961 GOPCQ9HD26 462 aa8.06□□□□□ -1.12
BRCA1-212ENST00000473961 ADGRG1Q9Y653 693 aa8.06□□□□□ -1.12
BRCA1-212ENST00000473961 FAM160A2Q8N612 972 aaPredicted RBP8.05□□□□□ -1.12
BRCA1-212ENST00000473961 PRDM9Q9NQV7 894 aa8.05□□□□□ -1.12
BRCA1-212ENST00000473961 FLIIQ13045 1269 aa8.04□□□□□ -1.12
BRCA1-212ENST00000473961 ZMYND15Q9H091 742 aa8.04□□□□□ -1.12
BRCA1-212ENST00000473961 RSPH6AQ9H0K4 717 aa8.04□□□□□ -1.12
BRCA1-212ENST00000473961 SUPT5HO00267 1087 aaKnown RBP8.03□□□□□ -1.12
BRCA1-212ENST00000473961 ZBTB24O43167 697 aaPredicted RBP8.03□□□□□ -1.12
BRCA1-212ENST00000473961 XP32Q5T750 250 aa8.03□□□□□ -1.12
BRCA1-212ENST00000473961 CLCN1P35523 988 aa8.02□□□□□ -1.13
BRCA1-212ENST00000473961 TRIM32Q13049 653 aa8.02□□□□□ -1.13
BRCA1-212ENST00000473961 TRIM46Q7Z4K8 759 aa8.02□□□□□ -1.13
BRCA1-212ENST00000473961 BMP1P13497 986 aa8.01□□□□□ -1.13
BRCA1-212ENST00000473961 TMEM151AQ8N4L1 468 aa8.01□□□□□ -1.13
BRCA1-212ENST00000473961 FECHP22830 423 aa8□□□□□ -1.13
BRCA1-212ENST00000473961 FAM161AQ3B820 660 aa8□□□□□ -1.13
BRCA1-212ENST00000473961 MORN1Q5T089 497 aa8□□□□□ -1.13
BRCA1-212ENST00000473961 GIGYF2Q6Y7W6 1299 aaKnown RBP8□□□□□ -1.13
BRCA1-212ENST00000473961 PCMTD1Q96MG8 357 aaPredicted RBP8□□□□□ -1.13
BRCA1-212ENST00000473961 PLEKHG3A1L390 1219 aa7.99□□□□□ -1.13
BRCA1-212ENST00000473961 KRTAP4-8Q9BYQ9 185 aa7.99□□□□□ -1.13
BRCA1-212ENST00000473961 GDF11O95390 407 aa7.98□□□□□ -1.13
BRCA1-212ENST00000473961 RASSF7Q02833 373 aa7.98□□□□□ -1.13
BRCA1-212ENST00000473961 GPCPD1Q9NPB8 672 aa7.98□□□□□ -1.13
BRCA1-212ENST00000473961 FMNL1O95466 1100 aaPredicted RBP7.97□□□□□ -1.13
BRCA1-212ENST00000473961 OATP04181 439 aa7.97□□□□□ -1.13
BRCA1-212ENST00000473961 REPIN1Q9BWE0 567 aaKnown RBP7.97□□□□□ -1.13
BRCA1-212ENST00000473961 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.96□□□□□ -1.14
BRCA1-212ENST00000473961 VSIG8P0DPA2 414 aa7.96□□□□□ -1.14
BRCA1-212ENST00000473961 MSS51Q4VC12 460 aa7.95□□□□□ -1.14
BRCA1-212ENST00000473961 SLC27A5Q9Y2P5 690 aa7.94□□□□□ -1.14
BRCA1-212ENST00000473961 MS4A1P11836 297 aa7.93□□□□□ -1.14
BRCA1-212ENST00000473961 SH3D19Q5HYK7 790 aa7.93□□□□□ -1.14
BRCA1-212ENST00000473961 BRICD5Q6PL45 260 aa7.93□□□□□ -1.14
BRCA1-212ENST00000473961 MDM2Q00987 491 aaPredicted RBP7.92□□□□□ -1.14
BRCA1-212ENST00000473961 FUT2Q10981 343 aa7.92□□□□□ -1.14
BRCA1-212ENST00000473961 DIXDC1Q155Q3 683 aa7.92□□□□□ -1.14
BRCA1-212ENST00000473961 ATP1B4Q9UN42 357 aaPredicted RBP7.92□□□□□ -1.14
BRCA1-212ENST00000473961 SALL2Q9Y467 1007 aaPredicted RBP7.92□□□□□ -1.14
BRCA1-212ENST00000473961 SKOR1P84550 965 aa7.91□□□□□ -1.14
BRCA1-212ENST00000473961 RC3H1Q5TC82 1133 aaKnown RBP7.91□□□□□ -1.14
BRCA1-212ENST00000473961 CAPN5O15484 640 aaPredicted RBP7.9□□□□□ -1.14
BRCA1-212ENST00000473961 ALDH1A1P00352 501 aa7.9□□□□□ -1.14
BRCA1-212ENST00000473961 SSTR3P32745 418 aaPredicted RBP7.9□□□□□ -1.14
BRCA1-212ENST00000473961 SKIV2LQ15477 1246 aaKnown RBP7.9□□□□□ -1.14
BRCA1-212ENST00000473961 RNF19BQ6ZMZ0 732 aa7.9□□□□□ -1.14
BRCA1-212ENST00000473961 ATP6V1AP38606 617 aa7.89□□□□□ -1.15
BRCA1-212ENST00000473961 RSPH4AQ5TD94 716 aa7.89□□□□□ -1.15
BRCA1-212ENST00000473961 METTL3Q86U44 580 aaKnown RBP7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms