RNA–Protein interactions for RNA: ENST00000473854.5

CCDC39-203, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 487 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-203ENST00000473854 FUT2Q10981 343 aa7□□□□□ -1.29
CCDC39-203ENST00000473854 TRIM32Q13049 653 aa7□□□□□ -1.29
CCDC39-203ENST00000473854 FAM160A2Q8N612 972 aaPredicted RBP7□□□□□ -1.29
CCDC39-203ENST00000473854 Q3C1V9 767 aa6.99□□□□□ -1.29
CCDC39-203ENST00000473854 NPAS3Q8IXF0 933 aa6.99□□□□□ -1.29
CCDC39-203ENST00000473854 SLC27A5Q9Y2P5 690 aa6.99□□□□□ -1.29
CCDC39-203ENST00000473854 BRICD5Q6PL45 260 aa6.98□□□□□ -1.29
CCDC39-203ENST00000473854 P3H3Q8IVL6 736 aa6.97□□□□□ -1.29
CCDC39-203ENST00000473854 IRF7Q92985 503 aa6.97□□□□□ -1.29
CCDC39-203ENST00000473854 MRGPRX2Q96LB1 330 aa6.97□□□□□ -1.29
CCDC39-203ENST00000473854 DDX11L8A8MPP1 907 aa6.96□□□□□ -1.3
CCDC39-203ENST00000473854 GCGRP47871 477 aa6.96□□□□□ -1.3
CCDC39-203ENST00000473854 ZSCAN1Q8NBB4 408 aa6.96□□□□□ -1.3
CCDC39-203ENST00000473854 KCNV2Q8TDN2 545 aa6.96□□□□□ -1.3
CCDC39-203ENST00000473854 PRDM9Q9NQV7 894 aa6.96□□□□□ -1.3
CCDC39-203ENST00000473854 NXF1Q9UBU9 619 aaKnown RBP6.96□□□□□ -1.3
CCDC39-203ENST00000473854 FECHP22830 423 aa6.95□□□□□ -1.3
CCDC39-203ENST00000473854 J3QL48 77 aa6.94□□□□□ -1.3
CCDC39-203ENST00000473854 MMP16P51512 607 aa6.94□□□□□ -1.3
CCDC39-203ENST00000473854 WNT7BP56706 349 aa6.94□□□□□ -1.3
CCDC39-203ENST00000473854 LCE2CQ5TA81 110 aa6.94□□□□□ -1.3
CCDC39-203ENST00000473854 HPS1Q92902 700 aa6.93□□□□□ -1.3
CCDC39-203ENST00000473854 GNPATO15228 680 aa6.91□□□□□ -1.3
CCDC39-203ENST00000473854 SMYD5Q6GMV2 418 aa6.91□□□□□ -1.3
CCDC39-203ENST00000473854 RNF19BQ6ZMZ0 732 aa6.91□□□□□ -1.3
CCDC39-203ENST00000473854 DXOO77932 396 aaKnown RBP6.9□□□□□ -1.3
CCDC39-203ENST00000473854 GMPRP36959 345 aa6.9□□□□□ -1.3
CCDC39-203ENST00000473854 RC3H1Q5TC82 1133 aaKnown RBP6.9□□□□□ -1.3
CCDC39-203ENST00000473854 USB1Q9BQ65 265 aaKnown RBP6.89□□□□□ -1.31
CCDC39-203ENST00000473854 ALDH1A1P00352 501 aa6.88□□□□□ -1.31
CCDC39-203ENST00000473854 H3BM21 787 aa6.87□□□□□ -1.31
CCDC39-203ENST00000473854 USP46P62068 366 aa6.86□□□□□ -1.31
CCDC39-203ENST00000473854 CCDC24Q8N4L8 307 aa6.86□□□□□ -1.31
CCDC39-203ENST00000473854 WASF2Q9Y6W5 498 aa6.86□□□□□ -1.31
CCDC39-203ENST00000473854 SEMA3EO15041 775 aa6.85□□□□□ -1.31
CCDC39-203ENST00000473854 CAPN5O15484 640 aaPredicted RBP6.85□□□□□ -1.31
CCDC39-203ENST00000473854 LORP23490 312 aaPredicted RBP6.84□□□□□ -1.31
CCDC39-203ENST00000473854 SKOR1P84550 965 aa6.83□□□□□ -1.32
CCDC39-203ENST00000473854 EHBP1Q8NDI1 1231 aa6.83□□□□□ -1.32
CCDC39-203ENST00000473854 KDM4AO75164 1064 aa6.82□□□□□ -1.32
CCDC39-203ENST00000473854 AMER1Q5JTC6 1135 aaPredicted RBP6.82□□□□□ -1.32
CCDC39-203ENST00000473854 TRIM46Q7Z4K8 759 aa6.82□□□□□ -1.32
CCDC39-203ENST00000473854 BMP1P13497 986 aa6.81□□□□□ -1.32
CCDC39-203ENST00000473854 CD46P15529 392 aa6.81□□□□□ -1.32
CCDC39-203ENST00000473854 JUNDP17535 347 aa6.81□□□□□ -1.32
CCDC39-203ENST00000473854 SCARF1Q14162 830 aa6.8□□□□□ -1.32
CCDC39-203ENST00000473854 RBM26Q5T8P6 1007 aaKnown RBP6.8□□□□□ -1.32
CCDC39-203ENST00000473854 NLRP7Q8WX94 980 aa6.8□□□□□ -1.32
CCDC39-203ENST00000473854 TESPA1A2RU30 521 aaPredicted RBP6.79□□□□□ -1.32
CCDC39-203ENST00000473854 GPR37O15354 613 aa6.79□□□□□ -1.32
CCDC39-203ENST00000473854 SIAH2O43255 324 aa6.79□□□□□ -1.32
CCDC39-203ENST00000473854 VSIG8P0DPA2 414 aa6.79□□□□□ -1.32
CCDC39-203ENST00000473854 KRTAP4-8Q9BYQ9 185 aa6.79□□□□□ -1.32
CCDC39-203ENST00000473854 ERBB4Q15303 1308 aa6.78□□□□□ -1.32
CCDC39-203ENST00000473854 PLEKHG3A1L390 1219 aa6.78□□□□□ -1.32
CCDC39-203ENST00000473854 VEGFBP49765 207 aa6.78□□□□□ -1.32
CCDC39-203ENST00000473854 KCNMA1Q12791 1236 aa6.78□□□□□ -1.32
CCDC39-203ENST00000473854 TSHZ2Q9NRE2 1034 aa6.78□□□□□ -1.32
CCDC39-203ENST00000473854 RNF225M0QZC1 329 aaPredicted RBP6.77□□□□□ -1.33
CCDC39-203ENST00000473854 ZFP42Q96MM3 310 aa6.77□□□□□ -1.33
CCDC39-203ENST00000473854 PHOX2BQ99453 314 aa6.77□□□□□ -1.33
CCDC39-203ENST00000473854 NUDT12Q9BQG2 462 aa6.77□□□□□ -1.33
CCDC39-203ENST00000473854 HOXA2O43364 376 aa6.75□□□□□ -1.33
CCDC39-203ENST00000473854 RETREG3Q86VR2 466 aa6.75□□□□□ -1.33
CCDC39-203ENST00000473854 MPNDQ8N594 471 aa6.75□□□□□ -1.33
CCDC39-203ENST00000473854 MRPL14Q6P1L8 145 aaKnown RBP6.74□□□□□ -1.33
CCDC39-203ENST00000473854 GPIHBP1Q8IV16 184 aa6.74□□□□□ -1.33
CCDC39-203ENST00000473854 CCNYL3P0C7X3 344 aa6.73□□□□□ -1.33
CCDC39-203ENST00000473854 TMEM151AQ8N4L1 468 aa6.73□□□□□ -1.33
CCDC39-203ENST00000473854 ADH1CP00326 375 aa6.72□□□□□ -1.33
CCDC39-203ENST00000473854 MS4A1P11836 297 aa6.72□□□□□ -1.33
CCDC39-203ENST00000473854 VARSP26640 1264 aaKnown RBP6.72□□□□□ -1.33
CCDC39-203ENST00000473854 SH3BP2P78314 561 aa6.72□□□□□ -1.33
CCDC39-203ENST00000473854 NNTQ13423 1086 aa6.71□□□□□ -1.34
CCDC39-203ENST00000473854 MAP2K5Q13163 448 aa6.7□□□□□ -1.34
CCDC39-203ENST00000473854 PTPRNQ16849 979 aa6.7□□□□□ -1.34
CCDC39-203ENST00000473854 XP32Q5T750 250 aa6.7□□□□□ -1.34
CCDC39-203ENST00000473854 PTCRAQ6ISU1 281 aaPredicted RBP6.7□□□□□ -1.34
CCDC39-203ENST00000473854 NUTM1Q86Y26 1132 aa6.7□□□□□ -1.34
CCDC39-203ENST00000473854 KCTD17Q8N5Z5 321 aa6.7□□□□□ -1.34
CCDC39-203ENST00000473854 MAN1A2O60476 641 aa6.69□□□□□ -1.34
CCDC39-203ENST00000473854 HLA-CQ95604 372 aa6.69□□□□□ -1.34
CCDC39-203ENST00000473854 PURBQ96QR8 312 aaKnown RBP6.69□□□□□ -1.34
CCDC39-203ENST00000473854 GDF11O95390 407 aa6.68□□□□□ -1.34
CCDC39-203ENST00000473854 TIMP2P16035 220 aa6.68□□□□□ -1.34
CCDC39-203ENST00000473854 WDR4P57081 412 aaKnown RBP6.68□□□□□ -1.34
CCDC39-203ENST00000473854 UNC93B1Q9H1C4 597 aa6.68□□□□□ -1.34
CCDC39-203ENST00000473854 TLL2Q9Y6L7 1015 aa6.68□□□□□ -1.34
CCDC39-203ENST00000473854 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.67□□□□□ -1.34
CCDC39-203ENST00000473854 UPP2O95045 317 aa6.67□□□□□ -1.34
CCDC39-203ENST00000473854 MDM2Q00987 491 aaPredicted RBP6.67□□□□□ -1.34
CCDC39-203ENST00000473854 FAM174AQ8TBP5 190 aa6.67□□□□□ -1.34
CCDC39-203ENST00000473854 EVA1BQ9NVM1 165 aa6.67□□□□□ -1.34
CCDC39-203ENST00000473854 C6orf229H3BNL8 230 aa6.66□□□□□ -1.34
CCDC39-203ENST00000473854 CLCN1P35523 988 aa6.66□□□□□ -1.34
CCDC39-203ENST00000473854 RASSF7Q02833 373 aa6.66□□□□□ -1.34
CCDC39-203ENST00000473854 ZNF511Q8NB15 262 aa6.66□□□□□ -1.34
CCDC39-203ENST00000473854 IGHA1P01876 353 aa6.65□□□□□ -1.34
CCDC39-203ENST00000473854 FDX1P10109 184 aa6.65□□□□□ -1.34
CCDC39-203ENST00000473854 GUCA2AQ02747 115 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms