RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 YTHDC2Q9H6S0 1430 aaKnown RBP27.84■■■□□ 2.05
CCDC88B-206ENST00000473405 TMEM132EQ6IEE7 984 aa27.84■■■□□ 2.05
CCDC88B-206ENST00000473405 STK26Q9P289 416 aa27.84■■■□□ 2.05
CCDC88B-206ENST00000473405 FMN2Q9NZ56 1722 aa27.84■■■□□ 2.05
CCDC88B-206ENST00000473405 NUTM2BA6NNL0 878 aaPredicted RBP27.83■■■□□ 2.05
CCDC88B-206ENST00000473405 NUTM2EB1AL46 878 aaPredicted RBP27.83■■■□□ 2.05
CCDC88B-206ENST00000473405 NUTM2AQ8IVF1 878 aaPredicted RBP27.83■■■□□ 2.05
CCDC88B-206ENST00000473405 PLEKHH1Q9ULM0 1364 aa27.83■■■□□ 2.05
CCDC88B-206ENST00000473405 WAPLQ7Z5K2 1190 aa27.81■■■□□ 2.04
CCDC88B-206ENST00000473405 SOS2Q07890 1332 aaPredicted RBP27.81■■■□□ 2.04
CCDC88B-206ENST00000473405 COL22A1Q8NFW1 1626 aaPredicted RBP27.81■■■□□ 2.04
CCDC88B-206ENST00000473405 ZNF772Q68DY9 489 aaPredicted RBP27.79■■■□□ 2.04
CCDC88B-206ENST00000473405 PXDNQ92626 1479 aa27.77■■■□□ 2.04
CCDC88B-206ENST00000473405 C14orf93Q9H972 538 aaKnown RBP27.77■■■□□ 2.04
CCDC88B-206ENST00000473405 CFAP70Q5T0N1 1121 aa27.74■■■□□ 2.03
CCDC88B-206ENST00000473405 KIF1AQ12756 1690 aa27.74■■■□□ 2.03
CCDC88B-206ENST00000473405 ADGRB1O14514 1584 aa27.73■■■□□ 2.03
CCDC88B-206ENST00000473405 RGPD8O14715 1765 aaPredicted RBP27.73■■■□□ 2.03
CCDC88B-206ENST00000473405 AFF2P51816 1311 aa27.73■■■□□ 2.03
CCDC88B-206ENST00000473405 ESCO1Q5FWF5 840 aa27.71■■■□□ 2.03
CCDC88B-206ENST00000473405 DLC1Q96QB1 1528 aa27.71■■■□□ 2.03
CCDC88B-206ENST00000473405 NPHP3Q7Z494 1330 aa27.7■■■□□ 2.03
CCDC88B-206ENST00000473405 HRCP23327 699 aa27.7■■■□□ 2.02
CCDC88B-206ENST00000473405 SIRT1Q96EB6 747 aa27.69■■■□□ 2.02
CCDC88B-206ENST00000473405 C8orf37Q96NL8 207 aa27.69■■■□□ 2.02
CCDC88B-206ENST00000473405 DHX57Q6P158 1386 aaKnown RBP27.69■■■□□ 2.02
CCDC88B-206ENST00000473405 MARF1Q9Y4F3 1742 aaKnown RBP27.69■■■□□ 2.02
CCDC88B-206ENST00000473405 CDK12Q9NYV4 1490 aaPredicted RBP27.68■■■□□ 2.02
CCDC88B-206ENST00000473405 NUTM2FA1L443 756 aa27.67■■■□□ 2.02
CCDC88B-206ENST00000473405 ADGRB2O60241 1585 aa27.66■■■□□ 2.02
CCDC88B-206ENST00000473405 USP32Q8NFA0 1604 aa27.64■■■□□ 2.02
CCDC88B-206ENST00000473405 FOXO3O43524 673 aa27.64■■■□□ 2.02
CCDC88B-206ENST00000473405 ADAMTS2O95450 1211 aa27.63■■■□□ 2.01
CCDC88B-206ENST00000473405 RXRBP28702 533 aa27.63■■■□□ 2.01
CCDC88B-206ENST00000473405 XPCQ01831 940 aaPredicted RBP27.63■■■□□ 2.01
CCDC88B-206ENST00000473405 PRAM1Q96QH2 718 aa27.62■■■□□ 2.01
CCDC88B-206ENST00000473405 RGS12O14924 1447 aa27.58■■■□□ 2.01
CCDC88B-206ENST00000473405 DCAF11Q8TEB1 546 aa27.58■■■□□ 2.01
CCDC88B-206ENST00000473405 ARHGEF28Q8N1W1 1705 aaKnown RBP27.58■■■□□ 2.01
CCDC88B-206ENST00000473405 SAFB2Q14151 953 aaKnown RBP eCLIP27.57■■■□□ 2
CCDC88B-206ENST00000473405 NGLY1Q96IV0 654 aa27.57■■■□□ 2
CCDC88B-206ENST00000473405 EP400Q96L91 3159 aa27.56■■■□□ 2
CCDC88B-206ENST00000473405 QTRT2Q9H974 415 aaKnown RBP27.56■■■□□ 2
CCDC88B-206ENST00000473405 KDM2AQ9Y2K7 1162 aa27.56■■■□□ 2
CCDC88B-206ENST00000473405 ABCA3Q99758 1704 aa27.54■■■□□ 2
CCDC88B-206ENST00000473405 ANKARQ7Z5J8 1434 aa27.53■■■□□ 2
CCDC88B-206ENST00000473405 SPATA31A3Q5VYP0 1347 aa27.52■■■□□ 2
CCDC88B-206ENST00000473405 RBM6P78332 1123 aaKnown RBP27.52■■■□□ 2
CCDC88B-206ENST00000473405 FNBP4Q8N3X1 1017 aaPredicted RBP27.52■■■□□ 2
CCDC88B-206ENST00000473405 STAC3Q96MF2 364 aa27.52■■■□□ 2
CCDC88B-206ENST00000473405 POGKQ9P215 609 aa27.52■■■□□ 2
CCDC88B-206ENST00000473405 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.51■■□□□ 1.99
CCDC88B-206ENST00000473405 PHF8Q9UPP1 1060 aa27.51■■□□□ 1.99
CCDC88B-206ENST00000473405 TRAK1Q9UPV9 953 aa27.51■■□□□ 1.99
CCDC88B-206ENST00000473405 TNS3Q68CZ2 1445 aa27.5■■□□□ 1.99
CCDC88B-206ENST00000473405 KIAA1210Q9ULL0 1709 aa27.5■■□□□ 1.99
CCDC88B-206ENST00000473405 USP21Q9UK80 565 aa27.5■■□□□ 1.99
CCDC88B-206ENST00000473405 ATRNO75882 1429 aa27.5■■□□□ 1.99
CCDC88B-206ENST00000473405 UPF1Q92900 1129 aaKnown RBP eCLIP27.49■■□□□ 1.99
CCDC88B-206ENST00000473405 TRPM3Q9HCF6 1732 aaPredicted RBP27.49■■□□□ 1.99
CCDC88B-206ENST00000473405 BCL9LQ86UU0 1499 aa27.49■■□□□ 1.99
CCDC88B-206ENST00000473405 TULP4Q9NRJ4 1543 aa27.48■■□□□ 1.99
CCDC88B-206ENST00000473405 KRT28Q7Z3Y7 464 aa27.48■■□□□ 1.99
CCDC88B-206ENST00000473405 HIRIP3Q9BW71 556 aaPredicted RBP27.46■■□□□ 1.99
CCDC88B-206ENST00000473405 MINK1Q8N4C8 1332 aaPredicted RBP27.44■■□□□ 1.98
CCDC88B-206ENST00000473405 TRPC5Q9UL62 973 aaPredicted RBP27.44■■□□□ 1.98
CCDC88B-206ENST00000473405 SBNO1A3KN83 1393 aa27.44■■□□□ 1.98
CCDC88B-206ENST00000473405 ALS2Q96Q42 1657 aa27.43■■□□□ 1.98
CCDC88B-206ENST00000473405 ITSN1Q15811 1721 aa27.43■■□□□ 1.98
CCDC88B-206ENST00000473405 PLCH1Q4KWH8 1693 aa27.43■■□□□ 1.98
CCDC88B-206ENST00000473405 PRR36Q9H6K5 1346 aa27.42■■□□□ 1.98
CCDC88B-206ENST00000473405 SLIT2O94813 1529 aa27.42■■□□□ 1.98
CCDC88B-206ENST00000473405 EIF3AQ14152 1382 aaKnown RBP27.41■■□□□ 1.98
CCDC88B-206ENST00000473405 PSME1Q06323 249 aa27.4■■□□□ 1.98
CCDC88B-206ENST00000473405 PMFBP1Q8TBY8 1022 aa27.39■■□□□ 1.98
CCDC88B-206ENST00000473405 NWD2Q9ULI1 1742 aa27.38■■□□□ 1.97
CCDC88B-206ENST00000473405 ATP7BP35670 1465 aa27.38■■□□□ 1.97
CCDC88B-206ENST00000473405 WASLO00401 505 aaPredicted RBP27.38■■□□□ 1.97
CCDC88B-206ENST00000473405 CRYBG1Q9Y4K1 1723 aa27.38■■□□□ 1.97
CCDC88B-206ENST00000473405 ARHGEF10O15013 1369 aa27.37■■□□□ 1.97
CCDC88B-206ENST00000473405 TOPAZ1Q8N9V7 1692 aa27.37■■□□□ 1.97
CCDC88B-206ENST00000473405 GLI3P10071 1580 aa27.37■■□□□ 1.97
CCDC88B-206ENST00000473405 CABLES1Q8TDN4 633 aa27.35■■□□□ 1.97
CCDC88B-206ENST00000473405 RALGAPBQ86X10 1494 aa27.32■■□□□ 1.96
CCDC88B-206ENST00000473405 NRAPQ86VF7 1730 aa27.3■■□□□ 1.96
CCDC88B-206ENST00000473405 LMOD2Q6P5Q4 547 aa27.3■■□□□ 1.96
CCDC88B-206ENST00000473405 UNC5CLQ8IV45 518 aa27.3■■□□□ 1.96
CCDC88B-206ENST00000473405 ATAD2Q6PL18 1390 aa27.3■■□□□ 1.96
CCDC88B-206ENST00000473405 GJD4Q96KN9 370 aaPredicted RBP27.29■■□□□ 1.96
CCDC88B-206ENST00000473405 GPRASP1Q5JY77 1395 aa27.29■■□□□ 1.96
CCDC88B-206ENST00000473405 PLEKHG5O94827 1062 aa27.28■■□□□ 1.96
CCDC88B-206ENST00000473405 NBPF1Q3BBV0 1214 aa27.28■■□□□ 1.96
CCDC88B-206ENST00000473405 SRCAPQ6ZRS2 3230 aa27.28■■□□□ 1.96
CCDC88B-206ENST00000473405 BRWD3Q6RI45 1802 aa27.27■■□□□ 1.96
CCDC88B-206ENST00000473405 HAP1P54257 671 aaPredicted RBP27.27■■□□□ 1.96
CCDC88B-206ENST00000473405 QRICH2Q9H0J4 1663 aa27.27■■□□□ 1.96
CCDC88B-206ENST00000473405 COL14A1Q05707 1796 aaKnown RBP27.25■■□□□ 1.95
CCDC88B-206ENST00000473405 TRPM1Q7Z4N2 1603 aa27.24■■□□□ 1.95
CCDC88B-206ENST00000473405 NUDT16Q96DE0 195 aaKnown RBP27.24■■□□□ 1.95
CCDC88B-206ENST00000473405 PHRF1Q9P1Y6 1649 aaKnown RBP27.23■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms