RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 FAM184BQ9ULE4 1060 aa10.75□□□□□ -0.69
COL6A3-210ENST00000473258 ODF2Q5BJF6 829 aa10.75□□□□□ -0.69
COL6A3-210ENST00000473258 MPNDQ8N594 471 aa10.75□□□□□ -0.69
COL6A3-210ENST00000473258 CHMP4CQ96CF2 233 aa10.75□□□□□ -0.69
COL6A3-210ENST00000473258 PLEKHD1A6NEE1 506 aa10.75□□□□□ -0.69
COL6A3-210ENST00000473258 MAP2K2P36507 400 aa10.75□□□□□ -0.69
COL6A3-210ENST00000473258 MICALL1Q8N3F8 863 aa10.75□□□□□ -0.69
COL6A3-210ENST00000473258 PCMTD1Q96MG8 357 aaPredicted RBP10.75□□□□□ -0.69
COL6A3-210ENST00000473258 KTN1Q86UP2 1357 aaKnown RBP10.75□□□□□ -0.69
COL6A3-210ENST00000473258 ZNHIT6Q9NWK9 470 aaKnown RBP10.75□□□□□ -0.69
COL6A3-210ENST00000473258 NAA25Q14CX7 972 aa10.74□□□□□ -0.69
COL6A3-210ENST00000473258 CCAR1Q8IX12 1150 aaKnown RBP10.74□□□□□ -0.69
COL6A3-210ENST00000473258 C22orf23Q9BZE7 217 aa10.74□□□□□ -0.69
COL6A3-210ENST00000473258 PDILTQ8N807 584 aa10.74□□□□□ -0.69
COL6A3-210ENST00000473258 FAM184AQ8NB25 1140 aa10.74□□□□□ -0.69
COL6A3-210ENST00000473258 ATP6V1AP38606 617 aa10.74□□□□□ -0.69
COL6A3-210ENST00000473258 ZFP91Q96JP5 570 aaPredicted RBP10.74□□□□□ -0.69
COL6A3-210ENST00000473258 CCDC73Q6ZRK6 1079 aa10.74□□□□□ -0.69
COL6A3-210ENST00000473258 RSRC1Q96IZ7 334 aaKnown RBP10.74□□□□□ -0.69
COL6A3-210ENST00000473258 RPAINQ86UA6 219 aa10.73□□□□□ -0.69
COL6A3-210ENST00000473258 ERLIN2O94905 339 aa10.73□□□□□ -0.69
COL6A3-210ENST00000473258 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.73□□□□□ -0.69
COL6A3-210ENST00000473258 CEP57Q86XR8 500 aa10.73□□□□□ -0.69
COL6A3-210ENST00000473258 MIPOL1Q8TD10 442 aa10.73□□□□□ -0.69
COL6A3-210ENST00000473258 CEP83Q9Y592 693 aa10.73□□□□□ -0.69
COL6A3-210ENST00000473258 SMARCC1Q92922 1105 aaPredicted RBP10.73□□□□□ -0.69
COL6A3-210ENST00000473258 CARD11Q9BXL7 1154 aa10.73□□□□□ -0.69
COL6A3-210ENST00000473258 PRPF40AO75400 957 aaKnown RBP10.72□□□□□ -0.69
COL6A3-210ENST00000473258 KIF18AQ8NI77 898 aa10.72□□□□□ -0.69
COL6A3-210ENST00000473258 RSPH14Q9UHP6 348 aa10.72□□□□□ -0.69
COL6A3-210ENST00000473258 ZNF777Q9ULD5 760 aaPredicted RBP10.72□□□□□ -0.69
COL6A3-210ENST00000473258 DAAM2Q86T65 1068 aa10.72□□□□□ -0.69
COL6A3-210ENST00000473258 CFAP45Q9UL16 551 aa10.72□□□□□ -0.69
COL6A3-210ENST00000473258 IGSF3O75054 1194 aa10.72□□□□□ -0.69
COL6A3-210ENST00000473258 CHGAP10645 457 aaKnown RBP10.72□□□□□ -0.69
COL6A3-210ENST00000473258 PLPPR3Q6T4P5 718 aa10.72□□□□□ -0.69
COL6A3-210ENST00000473258 RTF1Q92541 710 aaKnown RBP10.72□□□□□ -0.69
COL6A3-210ENST00000473258 CHIC2Q9UKJ5 165 aa10.72□□□□□ -0.69
COL6A3-210ENST00000473258 ZBED9Q6R2W3 1325 aa10.72□□□□□ -0.69
COL6A3-210ENST00000473258 GIGYF2Q6Y7W6 1299 aaKnown RBP10.71□□□□□ -0.69
COL6A3-210ENST00000473258 FEZ1Q99689 392 aa10.71□□□□□ -0.69
COL6A3-210ENST00000473258 PTPN14Q15678 1187 aa10.71□□□□□ -0.69
COL6A3-210ENST00000473258 NEBLO76041 1014 aa10.71□□□□□ -0.69
COL6A3-210ENST00000473258 REC8O95072 547 aa10.71□□□□□ -0.69
COL6A3-210ENST00000473258 HSPA4P34932 840 aa10.71□□□□□ -0.7
COL6A3-210ENST00000473258 TAX1BP1Q86VP1 789 aa10.71□□□□□ -0.7
COL6A3-210ENST00000473258 SMC2O95347 1197 aa10.71□□□□□ -0.7
COL6A3-210ENST00000473258 GOLGA2Q08379 1002 aa10.71□□□□□ -0.7
COL6A3-210ENST00000473258 RBBP5Q15291 538 aaKnown RBP10.71□□□□□ -0.7
COL6A3-210ENST00000473258 ANKRD18AQ8IVF6 992 aa10.71□□□□□ -0.7
COL6A3-210ENST00000473258 CGNL1Q0VF96 1302 aa10.7□□□□□ -0.7
COL6A3-210ENST00000473258 MAP9Q49MG5 647 aa10.7□□□□□ -0.7
COL6A3-210ENST00000473258 CRBNQ96SW2 442 aa10.7□□□□□ -0.7
COL6A3-210ENST00000473258 MAP2K1Q02750 393 aaPredicted RBP10.7□□□□□ -0.7
COL6A3-210ENST00000473258 DBN1Q16643 649 aa10.7□□□□□ -0.7
COL6A3-210ENST00000473258 KCNH8Q96L42 1107 aa10.7□□□□□ -0.7
COL6A3-210ENST00000473258 KIF3CO14782 793 aa10.7□□□□□ -0.7
COL6A3-210ENST00000473258 CERS3Q8IU89 383 aa10.7□□□□□ -0.7
COL6A3-210ENST00000473258 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.7□□□□□ -0.7
COL6A3-210ENST00000473258 CCDC192P0DO97 292 aa10.69□□□□□ -0.7
COL6A3-210ENST00000473258 IQCEQ6IPM2 695 aa10.69□□□□□ -0.7
COL6A3-210ENST00000473258 BACH2Q9BYV9 841 aa10.69□□□□□ -0.7
COL6A3-210ENST00000473258 JAKMIP3Q5VZ66 844 aa10.69□□□□□ -0.7
COL6A3-210ENST00000473258 SMARCE1Q969G3 411 aa10.69□□□□□ -0.7
COL6A3-210ENST00000473258 OGFRQ9NZT2 677 aa10.69□□□□□ -0.7
COL6A3-210ENST00000473258 CLNS1AP54105 237 aaKnown RBP10.68□□□□□ -0.7
COL6A3-210ENST00000473258 TMX1Q9H3N1 280 aa10.68□□□□□ -0.7
COL6A3-210ENST00000473258 KIF5BP33176 963 aa10.68□□□□□ -0.7
COL6A3-210ENST00000473258 ZMAT2Q96NC0 199 aaKnown RBP10.68□□□□□ -0.7
COL6A3-210ENST00000473258 VPS37CA5D8V6 355 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-210ENST00000473258 CLUAP1Q96AJ1 413 aa10.68□□□□□ -0.7
COL6A3-210ENST00000473258 CCDC97Q96F63 343 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-210ENST00000473258 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-210ENST00000473258 CENPJQ9HC77 1338 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-210ENST00000473258 GABPB1Q06547 395 aaPredicted RBP10.67□□□□□ -0.7
COL6A3-210ENST00000473258 WDR63Q8IWG1 891 aa10.67□□□□□ -0.7
COL6A3-210ENST00000473258 FBXW7Q969H0 707 aa10.67□□□□□ -0.7
COL6A3-210ENST00000473258 CEP63Q96MT8 703 aa10.67□□□□□ -0.7
COL6A3-210ENST00000473258 CFAP57Q96MR6 1250 aa10.67□□□□□ -0.7
COL6A3-210ENST00000473258 SMC3Q9UQE7 1217 aa10.67□□□□□ -0.7
COL6A3-210ENST00000473258 FYB1O15117 783 aa10.67□□□□□ -0.7
COL6A3-210ENST00000473258 CCDC175P0C221 793 aa10.67□□□□□ -0.7
COL6A3-210ENST00000473258 MCM3P25205 808 aa10.67□□□□□ -0.7
COL6A3-210ENST00000473258 OLFM4Q6UX06 510 aa10.67□□□□□ -0.7
COL6A3-210ENST00000473258 SDF4Q9BRK5 362 aa10.67□□□□□ -0.7
COL6A3-210ENST00000473258 ZFYP08048 801 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-210ENST00000473258 GCKP35557 465 aa10.66□□□□□ -0.7
COL6A3-210ENST00000473258 FAM177A1Q8N128 213 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-210ENST00000473258 PIK3R5Q8WYR1 880 aa10.66□□□□□ -0.7
COL6A3-210ENST00000473258 SPATS2LQ9NUQ6 558 aaKnown RBP10.66□□□□□ -0.7
COL6A3-210ENST00000473258 OFD1O75665 1012 aa10.66□□□□□ -0.7
COL6A3-210ENST00000473258 SEPT7Q16181 437 aaKnown RBP10.66□□□□□ -0.7
COL6A3-210ENST00000473258 CIZ1Q9ULV3 898 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-210ENST00000473258 PABPN1Q86U42 306 aaKnown RBP eCLIP10.66□□□□□ -0.7
COL6A3-210ENST00000473258 RPUSD2Q8IZ73 545 aaKnown RBP10.65□□□□□ -0.7
COL6A3-210ENST00000473258 PPM1EQ8WY54 764 aa10.65□□□□□ -0.7
COL6A3-210ENST00000473258 LRRFIP2Q9Y608 721 aaKnown RBP10.65□□□□□ -0.7
COL6A3-210ENST00000473258 EBAG9O00559 213 aa10.65□□□□□ -0.7
COL6A3-210ENST00000473258 CAPN2P17655 700 aa10.65□□□□□ -0.7
COL6A3-210ENST00000473258 CCDC181Q5TID7 509 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms