RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 LRRC59Q96AG4 307 aaKnown RBP17.43■□□□□ 0.38
SYNE1-221ENST00000472563 PHLPP1O60346 1717 aa17.42■□□□□ 0.38
SYNE1-221ENST00000472563 NALCNQ8IZF0 1738 aa17.41■□□□□ 0.38
SYNE1-221ENST00000472563 DDX17Q92841 729 aaKnown RBP17.41■□□□□ 0.38
SYNE1-221ENST00000472563 ESCO1Q5FWF5 840 aa17.39■□□□□ 0.37
SYNE1-221ENST00000472563 PRAM1Q96QH2 718 aa17.39■□□□□ 0.37
SYNE1-221ENST00000472563 CDC42BPGQ6DT37 1551 aa17.39■□□□□ 0.37
SYNE1-221ENST00000472563 SOS2Q07890 1332 aaPredicted RBP17.39■□□□□ 0.37
SYNE1-221ENST00000472563 LAMC1P11047 1609 aa17.37■□□□□ 0.37
SYNE1-221ENST00000472563 POGKQ9P215 609 aa17.37■□□□□ 0.37
SYNE1-221ENST00000472563 ADGRB1O14514 1584 aa17.36■□□□□ 0.37
SYNE1-221ENST00000472563 TRAK1Q9UPV9 953 aa17.36■□□□□ 0.37
SYNE1-221ENST00000472563 NUTM2FA1L443 756 aa17.35■□□□□ 0.37
SYNE1-221ENST00000472563 MEX3CQ5U5Q3 659 aaKnown RBP17.35■□□□□ 0.37
SYNE1-221ENST00000472563 NPHP3Q7Z494 1330 aa17.35■□□□□ 0.37
SYNE1-221ENST00000472563 PNPLA6Q8IY17 1366 aa17.35■□□□□ 0.37
SYNE1-221ENST00000472563 DLC1Q96QB1 1528 aa17.35■□□□□ 0.37
SYNE1-221ENST00000472563 LRP6O75581 1613 aa17.34■□□□□ 0.37
SYNE1-221ENST00000472563 SAFB2Q14151 953 aaKnown RBP eCLIP17.34■□□□□ 0.37
SYNE1-221ENST00000472563 POTEAQ6S8J7 498 aa17.34■□□□□ 0.37
SYNE1-221ENST00000472563 KNDC1Q76NI1 1749 aa17.34■□□□□ 0.37
SYNE1-221ENST00000472563 NUTM2BA6NNL0 878 aaPredicted RBP17.33■□□□□ 0.36
SYNE1-221ENST00000472563 NUTM2EB1AL46 878 aaPredicted RBP17.33■□□□□ 0.36
SYNE1-221ENST00000472563 FOXO3O43524 673 aa17.33■□□□□ 0.36
SYNE1-221ENST00000472563 NUTM2AQ8IVF1 878 aaPredicted RBP17.33■□□□□ 0.36
SYNE1-221ENST00000472563 NHSL1Q5SYE7 1610 aa17.32■□□□□ 0.36
SYNE1-221ENST00000472563 TRIM26Q12899 539 aaPredicted RBP17.31■□□□□ 0.36
SYNE1-221ENST00000472563 SHPRHQ149N8 1683 aa17.29■□□□□ 0.36
SYNE1-221ENST00000472563 ZNF772Q68DY9 489 aaPredicted RBP17.29■□□□□ 0.36
SYNE1-221ENST00000472563 L3MBTL2Q969R5 705 aa17.29■□□□□ 0.36
SYNE1-221ENST00000472563 SIN3AQ96ST3 1273 aa17.29■□□□□ 0.36
SYNE1-221ENST00000472563 PHF8Q9UPP1 1060 aa17.28■□□□□ 0.36
SYNE1-221ENST00000472563 MINK1Q8N4C8 1332 aaPredicted RBP17.27■□□□□ 0.36
SYNE1-221ENST00000472563 PXDNQ92626 1479 aa17.27■□□□□ 0.36
SYNE1-221ENST00000472563 XPCQ01831 940 aaPredicted RBP17.27■□□□□ 0.36
SYNE1-221ENST00000472563 HIRIP3Q9BW71 556 aaPredicted RBP17.27■□□□□ 0.36
SYNE1-221ENST00000472563 WASLO00401 505 aaPredicted RBP17.26■□□□□ 0.35
SYNE1-221ENST00000472563 NBPF1Q3BBV0 1214 aa17.26■□□□□ 0.35
SYNE1-221ENST00000472563 ANKARQ7Z5J8 1434 aa17.26■□□□□ 0.35
SYNE1-221ENST00000472563 NEUROD1Q13562 356 aa17.25■□□□□ 0.35
SYNE1-221ENST00000472563 KRT28Q7Z3Y7 464 aa17.25■□□□□ 0.35
SYNE1-221ENST00000472563 EIF3AQ14152 1382 aaKnown RBP17.25■□□□□ 0.35
SYNE1-221ENST00000472563 C8orf37Q96NL8 207 aa17.24■□□□□ 0.35
SYNE1-221ENST00000472563 AFF2P51816 1311 aa17.23■□□□□ 0.35
SYNE1-221ENST00000472563 ADAMTS2O95450 1211 aa17.23■□□□□ 0.35
SYNE1-221ENST00000472563 PSME1Q06323 249 aa17.23■□□□□ 0.35
SYNE1-221ENST00000472563 FMN2Q9NZ56 1722 aa17.23■□□□□ 0.35
SYNE1-221ENST00000472563 SPATA31A3Q5VYP0 1347 aa17.22■□□□□ 0.35
SYNE1-221ENST00000472563 ADGRB2O60241 1585 aa17.22■□□□□ 0.35
SYNE1-221ENST00000472563 PRR36Q9H6K5 1346 aa17.21■□□□□ 0.35
SYNE1-221ENST00000472563 NGLY1Q96IV0 654 aa17.21■□□□□ 0.35
SYNE1-221ENST00000472563 PMFBP1Q8TBY8 1022 aa17.2■□□□□ 0.34
SYNE1-221ENST00000472563 SBNO1A3KN83 1393 aa17.19■□□□□ 0.34
SYNE1-221ENST00000472563 RXRBP28702 533 aa17.18■□□□□ 0.34
SYNE1-221ENST00000472563 FNBP4Q8N3X1 1017 aaPredicted RBP17.18■□□□□ 0.34
SYNE1-221ENST00000472563 CDK19Q9BWU1 502 aa17.18■□□□□ 0.34
SYNE1-221ENST00000472563 TULP4Q9NRJ4 1543 aa17.17■□□□□ 0.34
SYNE1-221ENST00000472563 KIF1AQ12756 1690 aa17.17■□□□□ 0.34
SYNE1-221ENST00000472563 NUDT16Q96DE0 195 aaKnown RBP17.17■□□□□ 0.34
SYNE1-221ENST00000472563 QTRT2Q9H974 415 aaKnown RBP17.17■□□□□ 0.34
SYNE1-221ENST00000472563 CENPJQ9HC77 1338 aaPredicted RBP17.17■□□□□ 0.34
SYNE1-221ENST00000472563 KIAA1210Q9ULL0 1709 aa17.16■□□□□ 0.34
SYNE1-221ENST00000472563 TNS3Q68CZ2 1445 aa17.16■□□□□ 0.34
SYNE1-221ENST00000472563 COL22A1Q8NFW1 1626 aaPredicted RBP17.16■□□□□ 0.34
SYNE1-221ENST00000472563 GPRASP1Q5JY77 1395 aa17.15■□□□□ 0.34
SYNE1-221ENST00000472563 USP21Q9UK80 565 aa17.15■□□□□ 0.34
SYNE1-221ENST00000472563 ARHGEF10O15013 1369 aa17.15■□□□□ 0.34
SYNE1-221ENST00000472563 RBM6P78332 1123 aaKnown RBP17.14■□□□□ 0.33
SYNE1-221ENST00000472563 NGDNQ8NEJ9 315 aaKnown RBP17.14■□□□□ 0.33
SYNE1-221ENST00000472563 LMOD2Q6P5Q4 547 aa17.13■□□□□ 0.33
SYNE1-221ENST00000472563 CCDC61Q9Y6R9 512 aa17.13■□□□□ 0.33
SYNE1-221ENST00000472563 USP32Q8NFA0 1604 aa17.13■□□□□ 0.33
SYNE1-221ENST00000472563 ATP7BP35670 1465 aa17.12■□□□□ 0.33
SYNE1-221ENST00000472563 NBPF8Q3BBV2 869 aa17.12■□□□□ 0.33
SYNE1-221ENST00000472563 TRPC5Q9UL62 973 aaPredicted RBP17.12■□□□□ 0.33
SYNE1-221ENST00000472563 ROCK2O75116 1388 aaKnown RBP17.12■□□□□ 0.33
SYNE1-221ENST00000472563 ARHGEF28Q8N1W1 1705 aaKnown RBP17.11■□□□□ 0.33
SYNE1-221ENST00000472563 PLEKHG3A1L390 1219 aa17.11■□□□□ 0.33
SYNE1-221ENST00000472563 TONSLQ96HA7 1378 aa17.11■□□□□ 0.33
SYNE1-221ENST00000472563 CDK12Q9NYV4 1490 aaPredicted RBP17.11■□□□□ 0.33
SYNE1-221ENST00000472563 HAP1P54257 671 aaPredicted RBP17.1■□□□□ 0.33
SYNE1-221ENST00000472563 CABLES1Q8TDN4 633 aa17.1■□□□□ 0.33
SYNE1-221ENST00000472563 SRPK2P78362 688 aaKnown RBP17.09■□□□□ 0.33
SYNE1-221ENST00000472563 BCL9LQ86UU0 1499 aa17.08■□□□□ 0.32
SYNE1-221ENST00000472563 POLR3AO14802 1390 aaPredicted RBP17.08■□□□□ 0.32
SYNE1-221ENST00000472563 ACEP12821 1306 aa17.07■□□□□ 0.32
SYNE1-221ENST00000472563 CABP2Q9NPB3 220 aa17.07■□□□□ 0.32
SYNE1-221ENST00000472563 ATRNO75882 1429 aa17.06■□□□□ 0.32
SYNE1-221ENST00000472563 PAK3O75914 559 aaPredicted RBP17.06■□□□□ 0.32
SYNE1-221ENST00000472563 UNC5CLQ8IV45 518 aa17.06■□□□□ 0.32
SYNE1-221ENST00000472563 EVC2Q86UK5 1308 aa17.05■□□□□ 0.32
SYNE1-221ENST00000472563 PLEKHG5O94827 1062 aa17.05■□□□□ 0.32
SYNE1-221ENST00000472563 CARD11Q9BXL7 1154 aa17.04■□□□□ 0.32
SYNE1-221ENST00000472563 SLIT2O94813 1529 aa17.04■□□□□ 0.32
SYNE1-221ENST00000472563 RGPD8O14715 1765 aaPredicted RBP17.03■□□□□ 0.32
SYNE1-221ENST00000472563 FAM83GA6ND36 823 aa17.03■□□□□ 0.32
SYNE1-221ENST00000472563 GJD4Q96KN9 370 aaPredicted RBP17.03■□□□□ 0.32
SYNE1-221ENST00000472563 RGS12O14924 1447 aa17.03■□□□□ 0.32
SYNE1-221ENST00000472563 TRPM1Q7Z4N2 1603 aa17.03■□□□□ 0.32
SYNE1-221ENST00000472563 CABP1Q9NZU7 370 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms