RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 USP19O94966 1318 aa13.35□□□□□ -0.27
CHD3-208ENST00000470531 CARD14Q9BXL6 1004 aa13.35□□□□□ -0.27
CHD3-208ENST00000470531 TMEM57Q8N5G2 664 aa13.35□□□□□ -0.27
CHD3-208ENST00000470531 ARHGAP5Q13017 1502 aa13.35□□□□□ -0.27
CHD3-208ENST00000470531 FGD1P98174 961 aa13.35□□□□□ -0.27
CHD3-208ENST00000470531 SSH1Q8WYL5 1049 aa13.35□□□□□ -0.27
CHD3-208ENST00000470531 UHRF1BP1Q6BDS2 1440 aa13.34□□□□□ -0.27
CHD3-208ENST00000470531 EIF3AQ14152 1382 aaKnown RBP13.34□□□□□ -0.27
CHD3-208ENST00000470531 MSNP26038 577 aaKnown RBP13.34□□□□□ -0.27
CHD3-208ENST00000470531 RBM42Q9BTD8 480 aaKnown RBP13.34□□□□□ -0.27
CHD3-208ENST00000470531 DTNBO60941 627 aa13.34□□□□□ -0.27
CHD3-208ENST00000470531 GBP4Q96PP9 640 aa13.34□□□□□ -0.27
CHD3-208ENST00000470531 MCTP1Q6DN14 999 aa13.34□□□□□ -0.27
CHD3-208ENST00000470531 HDGFL2Q7Z4V5 671 aaPredicted RBP13.34□□□□□ -0.27
CHD3-208ENST00000470531 CHMP5Q9NZZ3 219 aa13.34□□□□□ -0.27
CHD3-208ENST00000470531 BLMP54132 1417 aaPredicted RBP13.33□□□□□ -0.27
CHD3-208ENST00000470531 PRKAR2BP31323 418 aa13.33□□□□□ -0.28
CHD3-208ENST00000470531 RILPL2Q969X0 211 aa13.33□□□□□ -0.28
CHD3-208ENST00000470531 CHMP3Q9Y3E7 222 aa13.33□□□□□ -0.28
CHD3-208ENST00000470531 XRCC6P12956 609 aaKnown RBP eCLIP13.33□□□□□ -0.28
CHD3-208ENST00000470531 SCAPERQ9BY12 1400 aa13.32□□□□□ -0.28
CHD3-208ENST00000470531 MIS18AQ9NYP9 233 aa13.32□□□□□ -0.28
CHD3-208ENST00000470531 DIAPH1O60610 1272 aaKnown RBP13.31□□□□□ -0.28
CHD3-208ENST00000470531 MCM4P33991 863 aa13.31□□□□□ -0.28
CHD3-208ENST00000470531 NUTM2GQ5VZR2 741 aa13.31□□□□□ -0.28
CHD3-208ENST00000470531 CCDC9Q9Y3X0 531 aaKnown RBP13.31□□□□□ -0.28
CHD3-208ENST00000470531 ZMYM4Q5VZL5 1548 aa13.31□□□□□ -0.28
CHD3-208ENST00000470531 PDE3AQ14432 1141 aa13.31□□□□□ -0.28
CHD3-208ENST00000470531 RAPGEF3O95398 923 aa13.31□□□□□ -0.28
CHD3-208ENST00000470531 CALD1Q05682 793 aaKnown RBP13.3□□□□□ -0.28
CHD3-208ENST00000470531 DDX19BQ9UMR2 479 aa13.3□□□□□ -0.28
CHD3-208ENST00000470531 OS9Q13438 667 aaPredicted RBP13.3□□□□□ -0.28
CHD3-208ENST00000470531 MVPQ14764 893 aaKnown RBP13.3□□□□□ -0.28
CHD3-208ENST00000470531 FAM13BQ9NYF5 915 aa13.3□□□□□ -0.28
CHD3-208ENST00000470531 PRAG1Q86YV5 1406 aa13.3□□□□□ -0.28
CHD3-208ENST00000470531 RRS1Q15050 365 aaKnown RBP13.29□□□□□ -0.28
CHD3-208ENST00000470531 CABP1Q9NZU7 370 aa13.29□□□□□ -0.28
CHD3-208ENST00000470531 TRIM27P14373 513 aa13.29□□□□□ -0.28
CHD3-208ENST00000470531 CAVIN1Q6NZI2 390 aaKnown RBP13.29□□□□□ -0.28
CHD3-208ENST00000470531 PAXIP1Q6ZW49 1069 aaPredicted RBP13.29□□□□□ -0.28
CHD3-208ENST00000470531 PRAM1Q96QH2 718 aa13.29□□□□□ -0.28
CHD3-208ENST00000470531 NSD3Q9BZ95 1437 aa13.29□□□□□ -0.28
CHD3-208ENST00000470531 CASC1Q6TDU7 716 aa13.29□□□□□ -0.28
CHD3-208ENST00000470531 TERF2IPQ9NYB0 399 aa13.29□□□□□ -0.28
CHD3-208ENST00000470531 SMARCA5O60264 1052 aaPredicted RBP13.28□□□□□ -0.28
CHD3-208ENST00000470531 TSHZ3Q63HK5 1081 aa13.28□□□□□ -0.28
CHD3-208ENST00000470531 NAP1L2Q9ULW6 460 aaPredicted RBP13.28□□□□□ -0.28
CHD3-208ENST00000470531 EVC2Q86UK5 1308 aa13.28□□□□□ -0.28
CHD3-208ENST00000470531 AAMPQ13685 434 aa13.28□□□□□ -0.28
CHD3-208ENST00000470531 KLHL34Q8N239 644 aa13.27□□□□□ -0.28
CHD3-208ENST00000470531 ATF7IPQ6VMQ6 1270 aa13.27□□□□□ -0.29
CHD3-208ENST00000470531 LARP6Q9BRS8 491 aaKnown RBP13.27□□□□□ -0.29
CHD3-208ENST00000470531 MAGI1Q96QZ7 1491 aaPredicted RBP13.26□□□□□ -0.29
CHD3-208ENST00000470531 FAM83GA6ND36 823 aa13.26□□□□□ -0.29
CHD3-208ENST00000470531 KCNJ4P48050 445 aa13.26□□□□□ -0.29
CHD3-208ENST00000470531 WAPLQ7Z5K2 1190 aa13.26□□□□□ -0.29
CHD3-208ENST00000470531 COL17A1Q9UMD9 1497 aaPredicted RBP13.26□□□□□ -0.29
CHD3-208ENST00000470531 KIF21AQ7Z4S6 1674 aa13.25□□□□□ -0.29
CHD3-208ENST00000470531 A0A0G2JS52 829 aa13.25□□□□□ -0.29
CHD3-208ENST00000470531 DISP1Q96F81 1524 aa13.25□□□□□ -0.29
CHD3-208ENST00000470531 ZNF521Q96K83 1311 aa13.25□□□□□ -0.29
CHD3-208ENST00000470531 TMPOP42166 694 aaKnown RBP13.25□□□□□ -0.29
CHD3-208ENST00000470531 MAP4K4O95819 1239 aaPredicted RBP13.25□□□□□ -0.29
CHD3-208ENST00000470531 MAGI2Q86UL8 1455 aa13.24□□□□□ -0.29
CHD3-208ENST00000470531 PRPF40AO75400 957 aaKnown RBP13.24□□□□□ -0.29
CHD3-208ENST00000470531 RAPGEF6Q8TEU7 1601 aa13.24□□□□□ -0.29
CHD3-208ENST00000470531 CHAMP1Q96JM3 812 aa13.24□□□□□ -0.29
CHD3-208ENST00000470531 ANTXR1Q9H6X2 564 aa13.24□□□□□ -0.29
CHD3-208ENST00000470531 ARHGEF12Q9NZN5 1544 aa13.24□□□□□ -0.29
CHD3-208ENST00000470531 NKTRP30414 1462 aaKnown RBP13.23□□□□□ -0.29
CHD3-208ENST00000470531 SSFA2P28290 1259 aa13.23□□□□□ -0.29
CHD3-208ENST00000470531 RTF1Q92541 710 aaKnown RBP13.23□□□□□ -0.29
CHD3-208ENST00000470531 E9PCH4 1651 aa13.23□□□□□ -0.29
CHD3-208ENST00000470531 DDX11L8A8MPP1 907 aa13.23□□□□□ -0.29
CHD3-208ENST00000470531 EIF2S2P20042 333 aaKnown RBP13.23□□□□□ -0.29
CHD3-208ENST00000470531 DDX54Q8TDD1 881 aaKnown RBP13.23□□□□□ -0.29
CHD3-208ENST00000470531 KRT24Q2M2I5 525 aa13.23□□□□□ -0.29
CHD3-208ENST00000470531 GRPEL1Q9HAV7 217 aa13.23□□□□□ -0.29
CHD3-208ENST00000470531 ANO2Q9NQ90 1003 aa13.23□□□□□ -0.29
CHD3-208ENST00000470531 R3HCC1Q9Y3T6 440 aaKnown RBP13.23□□□□□ -0.29
CHD3-208ENST00000470531 A2MP01023 1474 aa13.22□□□□□ -0.29
CHD3-208ENST00000470531 C16orf71Q8IYS4 520 aaPredicted RBP13.22□□□□□ -0.29
CHD3-208ENST00000470531 TBC1D32Q96NH3 1257 aa13.22□□□□□ -0.29
CHD3-208ENST00000470531 ATAD2Q6PL18 1390 aa13.21□□□□□ -0.29
CHD3-208ENST00000470531 VGFO15240 615 aaPredicted RBP13.21□□□□□ -0.29
CHD3-208ENST00000470531 CHD1LQ86WJ1 897 aa13.21□□□□□ -0.29
CHD3-208ENST00000470531 EMILIN1Q9Y6C2 1016 aa13.21□□□□□ -0.29
CHD3-208ENST00000470531 SYNJ2O15056 1496 aa13.21□□□□□ -0.29
CHD3-208ENST00000470531 GPRASP1Q5JY77 1395 aa13.21□□□□□ -0.29
CHD3-208ENST00000470531 NASPP49321 788 aaPredicted RBP13.21□□□□□ -0.29
CHD3-208ENST00000470531 BBXQ8WY36 941 aaPredicted RBP13.21□□□□□ -0.29
CHD3-208ENST00000470531 ZRANB1Q9UGI0 708 aa13.21□□□□□ -0.29
CHD3-208ENST00000470531 KIAA0556O60303 1618 aa13.21□□□□□ -0.3
CHD3-208ENST00000470531 ATP10BO94823 1461 aa13.21□□□□□ -0.3
CHD3-208ENST00000470531 TXNDC2Q86VQ3 553 aa13.21□□□□□ -0.3
CHD3-208ENST00000470531 TNPO1Q92973 898 aaKnown RBP13.21□□□□□ -0.3
CHD3-208ENST00000470531 ADGRL2O95490 1459 aa13.2□□□□□ -0.3
CHD3-208ENST00000470531 ADGBQ8N7X0 1667 aa13.2□□□□□ -0.3
CHD3-208ENST00000470531 KDM5DQ9BY66 1539 aa13.2□□□□□ -0.3
CHD3-208ENST00000470531 GRIN2AQ12879 1464 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms