RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 STRCP1A6NGW2 1772 aa14.98□□□□□ -0.01
MSX1-202ENST00000468421 POLR3GLQ9BT43 218 aa14.98□□□□□ -0.01
MSX1-202ENST00000468421 PTCH1Q13635 1447 aa14.98□□□□□ -0.01
MSX1-202ENST00000468421 WAPLQ7Z5K2 1190 aa14.97□□□□□ -0.01
MSX1-202ENST00000468421 ADGRB2O60241 1585 aa14.96□□□□□ -0.01
MSX1-202ENST00000468421 POGKQ9P215 609 aa14.96□□□□□ -0.01
MSX1-202ENST00000468421 AMOTL2Q9Y2J4 779 aa14.96□□□□□ -0.01
MSX1-202ENST00000468421 SIRT1Q96EB6 747 aa14.95□□□□□ -0.02
MSX1-202ENST00000468421 NALCNQ8IZF0 1738 aa14.95□□□□□ -0.02
MSX1-202ENST00000468421 MINK1Q8N4C8 1332 aaPredicted RBP14.94□□□□□ -0.02
MSX1-202ENST00000468421 KCNA6P17658 529 aa14.93□□□□□ -0.02
MSX1-202ENST00000468421 SLC24A1O60721 1099 aa14.91□□□□□ -0.02
MSX1-202ENST00000468421 EVC2Q86UK5 1308 aa14.91□□□□□ -0.02
MSX1-202ENST00000468421 CDCA8Q53HL2 280 aa14.9□□□□□ -0.02
MSX1-202ENST00000468421 NKTRP30414 1462 aaKnown RBP14.89□□□□□ -0.03
MSX1-202ENST00000468421 TOPAZ1Q8N9V7 1692 aa14.88□□□□□ -0.03
MSX1-202ENST00000468421 CABP2Q9NPB3 220 aa14.88□□□□□ -0.03
MSX1-202ENST00000468421 FMN2Q9NZ56 1722 aa14.88□□□□□ -0.03
MSX1-202ENST00000468421 USP32Q8NFA0 1604 aa14.88□□□□□ -0.03
MSX1-202ENST00000468421 RGPD8O14715 1765 aaPredicted RBP14.88□□□□□ -0.03
MSX1-202ENST00000468421 XIRP1Q702N8 1843 aaKnown RBP14.87□□□□□ -0.03
MSX1-202ENST00000468421 FBXO41Q8TF61 875 aa14.86□□□□□ -0.03
MSX1-202ENST00000468421 PUS7Q96PZ0 661 aaKnown RBP14.86□□□□□ -0.03
MSX1-202ENST00000468421 CDK19Q9BWU1 502 aa14.86□□□□□ -0.03
MSX1-202ENST00000468421 CDC42BPGQ6DT37 1551 aa14.85□□□□□ -0.03
MSX1-202ENST00000468421 ATP7BP35670 1465 aa14.85□□□□□ -0.03
MSX1-202ENST00000468421 WASLO00401 505 aaPredicted RBP14.85□□□□□ -0.03
MSX1-202ENST00000468421 SRPK2P78362 688 aaKnown RBP14.85□□□□□ -0.03
MSX1-202ENST00000468421 ITSN1Q15811 1721 aa14.85□□□□□ -0.03
MSX1-202ENST00000468421 ATAD2Q6PL18 1390 aa14.85□□□□□ -0.03
MSX1-202ENST00000468421 ADGRL3Q9HAR2 1447 aa14.84□□□□□ -0.03
MSX1-202ENST00000468421 AKAP12Q02952 1782 aa14.83□□□□□ -0.03
MSX1-202ENST00000468421 RBM33Q96EV2 1170 aaKnown RBP14.83□□□□□ -0.04
MSX1-202ENST00000468421 PANK3Q9H999 370 aa14.83□□□□□ -0.04
MSX1-202ENST00000468421 MIER1Q8N108 512 aa14.82□□□□□ -0.04
MSX1-202ENST00000468421 PRR36Q9H6K5 1346 aa14.82□□□□□ -0.04
MSX1-202ENST00000468421 CD163L1Q9NR16 1453 aa14.82□□□□□ -0.04
MSX1-202ENST00000468421 SLC12A5Q9H2X9 1139 aa14.81□□□□□ -0.04
MSX1-202ENST00000468421 MON2Q7Z3U7 1717 aa14.8□□□□□ -0.04
MSX1-202ENST00000468421 PER1O15534 1290 aaPredicted RBP14.8□□□□□ -0.04
MSX1-202ENST00000468421 PROSER2Q86WR7 435 aaPredicted RBP14.8□□□□□ -0.04
MSX1-202ENST00000468421 TMC1Q8TDI8 760 aa14.8□□□□□ -0.04
MSX1-202ENST00000468421 ZNF335Q9H4Z2 1342 aaPredicted RBP14.8□□□□□ -0.04
MSX1-202ENST00000468421 NINLQ9Y2I6 1382 aa14.8□□□□□ -0.04
MSX1-202ENST00000468421 PPIP5K1Q6PFW1 1433 aa14.79□□□□□ -0.04
MSX1-202ENST00000468421 ANKRD36BQ8N2N9 1353 aa14.79□□□□□ -0.04
MSX1-202ENST00000468421 LRRC7Q96NW7 1537 aa14.78□□□□□ -0.04
MSX1-202ENST00000468421 A0A1W2PP64 1363 aa14.78□□□□□ -0.04
MSX1-202ENST00000468421 TMEM94Q12767 1356 aa14.78□□□□□ -0.04
MSX1-202ENST00000468421 NUDT16Q96DE0 195 aaKnown RBP14.78□□□□□ -0.04
MSX1-202ENST00000468421 NUTM2FA1L443 756 aa14.77□□□□□ -0.05
MSX1-202ENST00000468421 KIF20BQ96Q89 1820 aa14.77□□□□□ -0.05
MSX1-202ENST00000468421 NRKQ7Z2Y5 1582 aa14.77□□□□□ -0.05
MSX1-202ENST00000468421 ANKARQ7Z5J8 1434 aa14.76□□□□□ -0.05
MSX1-202ENST00000468421 NSD3Q9BZ95 1437 aa14.76□□□□□ -0.05
MSX1-202ENST00000468421 ANP32CO43423 234 aa14.76□□□□□ -0.05
MSX1-202ENST00000468421 CARD14Q9BXL6 1004 aa14.76□□□□□ -0.05
MSX1-202ENST00000468421 CABP1Q9NZU7 370 aa14.76□□□□□ -0.05
MSX1-202ENST00000468421 DMRT2Q9Y5R5 561 aa14.76□□□□□ -0.05
MSX1-202ENST00000468421 NCOA3Q9Y6Q9 1424 aa14.75□□□□□ -0.05
MSX1-202ENST00000468421 ANKRD26Q9UPS8 1709 aa14.75□□□□□ -0.05
MSX1-202ENST00000468421 C14orf37Q86TY3 774 aa14.74□□□□□ -0.05
MSX1-202ENST00000468421 PRKRIP1Q9H875 184 aaPredicted RBP14.74□□□□□ -0.05
MSX1-202ENST00000468421 CCDC61Q9Y6R9 512 aa14.74□□□□□ -0.05
MSX1-202ENST00000468421 CPSF1Q10570 1443 aaKnown RBP14.74□□□□□ -0.05
MSX1-202ENST00000468421 CNGB1Q14028 1251 aaPredicted RBP14.73□□□□□ -0.05
MSX1-202ENST00000468421 LTBP4Q8N2S1 1624 aa14.73□□□□□ -0.05
MSX1-202ENST00000468421 AMER1Q5JTC6 1135 aaPredicted RBP14.72□□□□□ -0.05
MSX1-202ENST00000468421 KNSTRNQ9Y448 316 aa14.72□□□□□ -0.05
MSX1-202ENST00000468421 DCCP43146 1447 aa14.72□□□□□ -0.05
MSX1-202ENST00000468421 CC2D1BQ5T0F9 858 aaKnown RBP14.71□□□□□ -0.05
MSX1-202ENST00000468421 TERF2IPQ9NYB0 399 aa14.71□□□□□ -0.05
MSX1-202ENST00000468421 KTN1Q86UP2 1357 aaKnown RBP14.71□□□□□ -0.06
MSX1-202ENST00000468421 PARD3Q8TEW0 1356 aa14.71□□□□□ -0.06
MSX1-202ENST00000468421 NPC1L1Q9UHC9 1359 aa14.71□□□□□ -0.06
MSX1-202ENST00000468421 MST1RQ04912 1400 aa14.7□□□□□ -0.06
MSX1-202ENST00000468421 PLEKHG3A1L390 1219 aa14.7□□□□□ -0.06
MSX1-202ENST00000468421 HDGFL2Q7Z4V5 671 aaPredicted RBP14.7□□□□□ -0.06
MSX1-202ENST00000468421 C19orf44Q9H6X5 657 aa14.7□□□□□ -0.06
MSX1-202ENST00000468421 KIF1AQ12756 1690 aa14.7□□□□□ -0.06
MSX1-202ENST00000468421 ACEP12821 1306 aa14.69□□□□□ -0.06
MSX1-202ENST00000468421 POLR3AO14802 1390 aaPredicted RBP14.69□□□□□ -0.06
MSX1-202ENST00000468421 MSH6P52701 1360 aa14.69□□□□□ -0.06
MSX1-202ENST00000468421 C1orf167Q5SNV9 1468 aa14.69□□□□□ -0.06
MSX1-202ENST00000468421 EDC4Q6P2E9 1401 aaKnown RBP14.68□□□□□ -0.06
MSX1-202ENST00000468421 PMFBP1Q8TBY8 1022 aa14.68□□□□□ -0.06
MSX1-202ENST00000468421 USP6P35125 1406 aa14.67□□□□□ -0.06
MSX1-202ENST00000468421 SSH2Q76I76 1423 aa14.66□□□□□ -0.06
MSX1-202ENST00000468421 CGNL1Q0VF96 1302 aa14.66□□□□□ -0.06
MSX1-202ENST00000468421 PIK3C2AO00443 1686 aa14.65□□□□□ -0.06
MSX1-202ENST00000468421 NSD2O96028 1365 aa14.65□□□□□ -0.06
MSX1-202ENST00000468421 ATF3P18847 181 aa14.65□□□□□ -0.06
MSX1-202ENST00000468421 RALBP1Q15311 655 aa14.65□□□□□ -0.06
MSX1-202ENST00000468421 PHF8Q9UPP1 1060 aa14.65□□□□□ -0.06
MSX1-202ENST00000468421 TRPM3Q9HCF6 1732 aaPredicted RBP14.65□□□□□ -0.06
MSX1-202ENST00000468421 MARF1Q9Y4F3 1742 aaKnown RBP14.65□□□□□ -0.06
MSX1-202ENST00000468421 CCER2I3L3R5 266 aa14.64□□□□□ -0.07
MSX1-202ENST00000468421 CCDC184Q52MB2 194 aa14.64□□□□□ -0.07
MSX1-202ENST00000468421 USP54Q70EL1 1684 aa14.63□□□□□ -0.07
MSX1-202ENST00000468421 ESCO1Q5FWF5 840 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms