RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 DHX57Q6P158 1386 aaKnown RBP27.95■■■□□ 2.06
COL7A1-207ENST00000467985 WAPLQ7Z5K2 1190 aa27.94■■■□□ 2.06
COL7A1-207ENST00000467985 STAC3Q96MF2 364 aa27.94■■■□□ 2.06
COL7A1-207ENST00000467985 CFAP70Q5T0N1 1121 aa27.93■■■□□ 2.06
COL7A1-207ENST00000467985 LRP6O75581 1613 aa27.92■■■□□ 2.06
COL7A1-207ENST00000467985 MEX3CQ5U5Q3 659 aaKnown RBP27.92■■■□□ 2.06
COL7A1-207ENST00000467985 ORAI2Q96SN7 254 aa27.92■■■□□ 2.06
COL7A1-207ENST00000467985 DDX17Q92841 729 aaKnown RBP27.89■■■□□ 2.06
COL7A1-207ENST00000467985 POTEAQ6S8J7 498 aa27.88■■■□□ 2.05
COL7A1-207ENST00000467985 DCAF11Q8TEB1 546 aa27.88■■■□□ 2.05
COL7A1-207ENST00000467985 PLEKHH1Q9ULM0 1364 aa27.87■■■□□ 2.05
COL7A1-207ENST00000467985 SOS2Q07890 1332 aaPredicted RBP27.87■■■□□ 2.05
COL7A1-207ENST00000467985 ESCO1Q5FWF5 840 aa27.86■■■□□ 2.05
COL7A1-207ENST00000467985 PNPLA6Q8IY17 1366 aa27.85■■■□□ 2.05
COL7A1-207ENST00000467985 NUTM2BA6NNL0 878 aaPredicted RBP27.84■■■□□ 2.05
COL7A1-207ENST00000467985 NUTM2EB1AL46 878 aaPredicted RBP27.84■■■□□ 2.05
COL7A1-207ENST00000467985 NUTM2AQ8IVF1 878 aaPredicted RBP27.84■■■□□ 2.05
COL7A1-207ENST00000467985 KDM2AQ9Y2K7 1162 aa27.84■■■□□ 2.05
COL7A1-207ENST00000467985 ZNF772Q68DY9 489 aaPredicted RBP27.83■■■□□ 2.05
COL7A1-207ENST00000467985 NPHP3Q7Z494 1330 aa27.83■■■□□ 2.05
COL7A1-207ENST00000467985 DLC1Q96QB1 1528 aa27.82■■■□□ 2.04
COL7A1-207ENST00000467985 FMN2Q9NZ56 1722 aa27.82■■■□□ 2.04
COL7A1-207ENST00000467985 ADGRB1O14514 1584 aa27.82■■■□□ 2.04
COL7A1-207ENST00000467985 PRAM1Q96QH2 718 aa27.8■■■□□ 2.04
COL7A1-207ENST00000467985 POGKQ9P215 609 aa27.78■■■□□ 2.04
COL7A1-207ENST00000467985 NUTM2FA1L443 756 aa27.76■■■□□ 2.03
COL7A1-207ENST00000467985 KIF1AQ12756 1690 aa27.75■■■□□ 2.03
COL7A1-207ENST00000467985 FOXO3O43524 673 aa27.75■■■□□ 2.03
COL7A1-207ENST00000467985 PXDNQ92626 1479 aa27.75■■■□□ 2.03
COL7A1-207ENST00000467985 SAFB2Q14151 953 aaKnown RBP eCLIP27.73■■■□□ 2.03
COL7A1-207ENST00000467985 COL22A1Q8NFW1 1626 aaPredicted RBP27.72■■■□□ 2.03
COL7A1-207ENST00000467985 TRAK1Q9UPV9 953 aa27.72■■■□□ 2.03
COL7A1-207ENST00000467985 AFF2P51816 1311 aa27.71■■■□□ 2.03
COL7A1-207ENST00000467985 ADGRB2O60241 1585 aa27.71■■■□□ 2.03
COL7A1-207ENST00000467985 C8orf37Q96NL8 207 aa27.69■■■□□ 2.02
COL7A1-207ENST00000467985 ANKARQ7Z5J8 1434 aa27.67■■■□□ 2.02
COL7A1-207ENST00000467985 PHF8Q9UPP1 1060 aa27.67■■■□□ 2.02
COL7A1-207ENST00000467985 EIF3AQ14152 1382 aaKnown RBP27.66■■■□□ 2.02
COL7A1-207ENST00000467985 ADAMTS2O95450 1211 aa27.66■■■□□ 2.02
COL7A1-207ENST00000467985 XPCQ01831 940 aaPredicted RBP27.66■■■□□ 2.02
COL7A1-207ENST00000467985 RGPD8O14715 1765 aaPredicted RBP27.65■■■□□ 2.02
COL7A1-207ENST00000467985 KIAA1210Q9ULL0 1709 aa27.65■■■□□ 2.02
COL7A1-207ENST00000467985 RXRBP28702 533 aa27.64■■■□□ 2.02
COL7A1-207ENST00000467985 NGLY1Q96IV0 654 aa27.64■■■□□ 2.02
COL7A1-207ENST00000467985 PSME1Q06323 249 aa27.62■■■□□ 2.01
COL7A1-207ENST00000467985 KRT28Q7Z3Y7 464 aa27.62■■■□□ 2.01
COL7A1-207ENST00000467985 MINK1Q8N4C8 1332 aaPredicted RBP27.62■■■□□ 2.01
COL7A1-207ENST00000467985 SPATA31A3Q5VYP0 1347 aa27.61■■■□□ 2.01
COL7A1-207ENST00000467985 ARHGEF28Q8N1W1 1705 aaKnown RBP27.61■■■□□ 2.01
COL7A1-207ENST00000467985 CDK12Q9NYV4 1490 aaPredicted RBP27.6■■■□□ 2.01
COL7A1-207ENST00000467985 HIRIP3Q9BW71 556 aaPredicted RBP27.6■■■□□ 2.01
COL7A1-207ENST00000467985 USP32Q8NFA0 1604 aa27.59■■■□□ 2.01
COL7A1-207ENST00000467985 WASLO00401 505 aaPredicted RBP27.58■■■□□ 2.01
COL7A1-207ENST00000467985 QTRT2Q9H974 415 aaKnown RBP27.58■■■□□ 2.01
COL7A1-207ENST00000467985 TULP4Q9NRJ4 1543 aa27.57■■■□□ 2
COL7A1-207ENST00000467985 SBNO1A3KN83 1393 aa27.56■■■□□ 2
COL7A1-207ENST00000467985 RBM6P78332 1123 aaKnown RBP27.55■■■□□ 2
COL7A1-207ENST00000467985 FNBP4Q8N3X1 1017 aaPredicted RBP27.55■■■□□ 2
COL7A1-207ENST00000467985 TNS3Q68CZ2 1445 aa27.55■■■□□ 2
COL7A1-207ENST00000467985 MARF1Q9Y4F3 1742 aaKnown RBP27.55■■■□□ 2
COL7A1-207ENST00000467985 USP21Q9UK80 565 aa27.54■■■□□ 2
COL7A1-207ENST00000467985 ARHGEF10O15013 1369 aa27.52■■■□□ 2
COL7A1-207ENST00000467985 PMFBP1Q8TBY8 1022 aa27.52■■■□□ 2
COL7A1-207ENST00000467985 PRR36Q9H6K5 1346 aa27.5■■□□□ 1.99
COL7A1-207ENST00000467985 L3MBTL2Q969R5 705 aa27.5■■□□□ 1.99
COL7A1-207ENST00000467985 TRPC5Q9UL62 973 aaPredicted RBP27.5■■□□□ 1.99
COL7A1-207ENST00000467985 GPRASP1Q5JY77 1395 aa27.49■■□□□ 1.99
COL7A1-207ENST00000467985 NBPF1Q3BBV0 1214 aa27.49■■□□□ 1.99
COL7A1-207ENST00000467985 ITSN1Q15811 1721 aa27.47■■□□□ 1.99
COL7A1-207ENST00000467985 SIN3AQ96ST3 1273 aa27.47■■□□□ 1.99
COL7A1-207ENST00000467985 ATRNO75882 1429 aa27.45■■□□□ 1.98
COL7A1-207ENST00000467985 HAP1P54257 671 aaPredicted RBP27.45■■□□□ 1.98
COL7A1-207ENST00000467985 LMOD2Q6P5Q4 547 aa27.45■■□□□ 1.98
COL7A1-207ENST00000467985 NUDT16Q96DE0 195 aaKnown RBP27.45■■□□□ 1.98
COL7A1-207ENST00000467985 ATP7BP35670 1465 aa27.44■■□□□ 1.98
COL7A1-207ENST00000467985 NEUROD1Q13562 356 aa27.44■■□□□ 1.98
COL7A1-207ENST00000467985 NGDNQ8NEJ9 315 aaKnown RBP27.44■■□□□ 1.98
COL7A1-207ENST00000467985 TRPM3Q9HCF6 1732 aaPredicted RBP27.44■■□□□ 1.98
COL7A1-207ENST00000467985 RGS12O14924 1447 aa27.43■■□□□ 1.98
COL7A1-207ENST00000467985 CDK19Q9BWU1 502 aa27.43■■□□□ 1.98
COL7A1-207ENST00000467985 BCL9LQ86UU0 1499 aa27.43■■□□□ 1.98
COL7A1-207ENST00000467985 CENPJQ9HC77 1338 aaPredicted RBP27.41■■□□□ 1.98
COL7A1-207ENST00000467985 TRIM26Q12899 539 aaPredicted RBP27.4■■□□□ 1.98
COL7A1-207ENST00000467985 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.4■■□□□ 1.98
COL7A1-207ENST00000467985 CABLES1Q8TDN4 633 aa27.39■■□□□ 1.98
COL7A1-207ENST00000467985 SLIT2O94813 1529 aa27.39■■□□□ 1.98
COL7A1-207ENST00000467985 ALS2Q96Q42 1657 aa27.39■■□□□ 1.97
COL7A1-207ENST00000467985 ABCA3Q99758 1704 aa27.38■■□□□ 1.97
COL7A1-207ENST00000467985 TRPM1Q7Z4N2 1603 aa27.38■■□□□ 1.97
COL7A1-207ENST00000467985 UNC5CLQ8IV45 518 aa27.37■■□□□ 1.97
COL7A1-207ENST00000467985 UPF1Q92900 1129 aaKnown RBP eCLIP27.37■■□□□ 1.97
COL7A1-207ENST00000467985 CCDC61Q9Y6R9 512 aa27.37■■□□□ 1.97
COL7A1-207ENST00000467985 TOPAZ1Q8N9V7 1692 aa27.36■■□□□ 1.97
COL7A1-207ENST00000467985 PAK3O75914 559 aaPredicted RBP27.34■■□□□ 1.97
COL7A1-207ENST00000467985 PLEKHG5O94827 1062 aa27.34■■□□□ 1.97
COL7A1-207ENST00000467985 QRICH2Q9H0J4 1663 aa27.33■■□□□ 1.97
COL7A1-207ENST00000467985 PLEKHG3A1L390 1219 aa27.33■■□□□ 1.97
COL7A1-207ENST00000467985 GJD4Q96KN9 370 aaPredicted RBP27.33■■□□□ 1.97
COL7A1-207ENST00000467985 POLR3AO14802 1390 aaPredicted RBP27.33■■□□□ 1.97
COL7A1-207ENST00000467985 ROCK2O75116 1388 aaKnown RBP27.33■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms