RNA–Protein interactions for RNA: ENST00000467464.1

PTPRF-211, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 571 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-211ENST00000467464 KNDC1Q76NI1 1749 aa17.73■□□□□ 0.43
PTPRF-211ENST00000467464 HRCP23327 699 aa17.73■□□□□ 0.43
PTPRF-211ENST00000467464 C14orf93Q9H972 538 aaKnown RBP17.73■□□□□ 0.43
PTPRF-211ENST00000467464 WAPLQ7Z5K2 1190 aa17.72■□□□□ 0.43
PTPRF-211ENST00000467464 SOS2Q07890 1332 aaPredicted RBP17.72■□□□□ 0.43
PTPRF-211ENST00000467464 LRRC59Q96AG4 307 aaKnown RBP17.71■□□□□ 0.43
PTPRF-211ENST00000467464 STK26Q9P289 416 aa17.71■□□□□ 0.43
PTPRF-211ENST00000467464 CFAP70Q5T0N1 1121 aa17.69■□□□□ 0.42
PTPRF-211ENST00000467464 SIRT1Q96EB6 747 aa17.68■□□□□ 0.42
PTPRF-211ENST00000467464 ADGRB1O14514 1584 aa17.67■□□□□ 0.42
PTPRF-211ENST00000467464 NUTM2BA6NNL0 878 aaPredicted RBP17.67■□□□□ 0.42
PTPRF-211ENST00000467464 NUTM2EB1AL46 878 aaPredicted RBP17.67■□□□□ 0.42
PTPRF-211ENST00000467464 NUTM2AQ8IVF1 878 aaPredicted RBP17.67■□□□□ 0.42
PTPRF-211ENST00000467464 MEX3CQ5U5Q3 659 aaKnown RBP17.66■□□□□ 0.42
PTPRF-211ENST00000467464 PXDNQ92626 1479 aa17.66■□□□□ 0.42
PTPRF-211ENST00000467464 DHX57Q6P158 1386 aaKnown RBP17.65■□□□□ 0.42
PTPRF-211ENST00000467464 ZNF772Q68DY9 489 aaPredicted RBP17.64■□□□□ 0.41
PTPRF-211ENST00000467464 DLC1Q96QB1 1528 aa17.63■□□□□ 0.41
PTPRF-211ENST00000467464 AFF2P51816 1311 aa17.63■□□□□ 0.41
PTPRF-211ENST00000467464 FMN2Q9NZ56 1722 aa17.63■□□□□ 0.41
PTPRF-211ENST00000467464 ESCO1Q5FWF5 840 aa17.62■□□□□ 0.41
PTPRF-211ENST00000467464 NPHP3Q7Z494 1330 aa17.62■□□□□ 0.41
PTPRF-211ENST00000467464 COL22A1Q8NFW1 1626 aaPredicted RBP17.61■□□□□ 0.41
PTPRF-211ENST00000467464 NUTM2FA1L443 756 aa17.6■□□□□ 0.41
PTPRF-211ENST00000467464 PRAM1Q96QH2 718 aa17.59■□□□□ 0.41
PTPRF-211ENST00000467464 ADGRB2O60241 1585 aa17.58■□□□□ 0.41
PTPRF-211ENST00000467464 FOXO3O43524 673 aa17.58■□□□□ 0.4
PTPRF-211ENST00000467464 CDK12Q9NYV4 1490 aaPredicted RBP17.57■□□□□ 0.4
PTPRF-211ENST00000467464 XPCQ01831 940 aaPredicted RBP17.57■□□□□ 0.4
PTPRF-211ENST00000467464 DCAF11Q8TEB1 546 aa17.57■□□□□ 0.4
PTPRF-211ENST00000467464 C8orf37Q96NL8 207 aa17.57■□□□□ 0.4
PTPRF-211ENST00000467464 KDM2AQ9Y2K7 1162 aa17.56■□□□□ 0.4
PTPRF-211ENST00000467464 KIF1AQ12756 1690 aa17.55■□□□□ 0.4
PTPRF-211ENST00000467464 ADAMTS2O95450 1211 aa17.55■□□□□ 0.4
PTPRF-211ENST00000467464 SAFB2Q14151 953 aaKnown RBP eCLIP17.55■□□□□ 0.4
PTPRF-211ENST00000467464 STAC3Q96MF2 364 aa17.55■□□□□ 0.4
PTPRF-211ENST00000467464 USP32Q8NFA0 1604 aa17.54■□□□□ 0.4
PTPRF-211ENST00000467464 RXRBP28702 533 aa17.54■□□□□ 0.4
PTPRF-211ENST00000467464 SPATA31A3Q5VYP0 1347 aa17.53■□□□□ 0.4
PTPRF-211ENST00000467464 TRAK1Q9UPV9 953 aa17.53■□□□□ 0.4
PTPRF-211ENST00000467464 ANKARQ7Z5J8 1434 aa17.53■□□□□ 0.4
PTPRF-211ENST00000467464 FNBP4Q8N3X1 1017 aaPredicted RBP17.52■□□□□ 0.4
PTPRF-211ENST00000467464 RGS12O14924 1447 aa17.52■□□□□ 0.4
PTPRF-211ENST00000467464 QTRT2Q9H974 415 aaKnown RBP17.51■□□□□ 0.39
PTPRF-211ENST00000467464 PHF8Q9UPP1 1060 aa17.51■□□□□ 0.39
PTPRF-211ENST00000467464 PRR36Q9H6K5 1346 aa17.5■□□□□ 0.39
PTPRF-211ENST00000467464 NGLY1Q96IV0 654 aa17.5■□□□□ 0.39
PTPRF-211ENST00000467464 POGKQ9P215 609 aa17.5■□□□□ 0.39
PTPRF-211ENST00000467464 ATRNO75882 1429 aa17.49■□□□□ 0.39
PTPRF-211ENST00000467464 KRT28Q7Z3Y7 464 aa17.49■□□□□ 0.39
PTPRF-211ENST00000467464 BCL9LQ86UU0 1499 aa17.49■□□□□ 0.39
PTPRF-211ENST00000467464 TNS3Q68CZ2 1445 aa17.48■□□□□ 0.39
PTPRF-211ENST00000467464 TULP4Q9NRJ4 1543 aa17.48■□□□□ 0.39
PTPRF-211ENST00000467464 RBM6P78332 1123 aaKnown RBP17.48■□□□□ 0.39
PTPRF-211ENST00000467464 HIRIP3Q9BW71 556 aaPredicted RBP17.48■□□□□ 0.39
PTPRF-211ENST00000467464 MINK1Q8N4C8 1332 aaPredicted RBP17.47■□□□□ 0.39
PTPRF-211ENST00000467464 UPF1Q92900 1129 aaKnown RBP eCLIP17.47■□□□□ 0.39
PTPRF-211ENST00000467464 USP21Q9UK80 565 aa17.47■□□□□ 0.39
PTPRF-211ENST00000467464 SBNO1A3KN83 1393 aa17.47■□□□□ 0.39
PTPRF-211ENST00000467464 ARHGEF28Q8N1W1 1705 aaKnown RBP17.47■□□□□ 0.39
PTPRF-211ENST00000467464 RGPD8O14715 1765 aaPredicted RBP17.45■□□□□ 0.38
PTPRF-211ENST00000467464 WASLO00401 505 aaPredicted RBP17.45■□□□□ 0.38
PTPRF-211ENST00000467464 SLIT2O94813 1529 aa17.44■□□□□ 0.38
PTPRF-211ENST00000467464 PMFBP1Q8TBY8 1022 aa17.44■□□□□ 0.38
PTPRF-211ENST00000467464 ATP7BP35670 1465 aa17.44■□□□□ 0.38
PTPRF-211ENST00000467464 EIF3AQ14152 1382 aaKnown RBP17.43■□□□□ 0.38
PTPRF-211ENST00000467464 TRPC5Q9UL62 973 aaPredicted RBP17.43■□□□□ 0.38
PTPRF-211ENST00000467464 TRPM3Q9HCF6 1732 aaPredicted RBP17.43■□□□□ 0.38
PTPRF-211ENST00000467464 KIAA1210Q9ULL0 1709 aa17.43■□□□□ 0.38
PTPRF-211ENST00000467464 MARF1Q9Y4F3 1742 aaKnown RBP17.42■□□□□ 0.38
PTPRF-211ENST00000467464 PSME1Q06323 249 aa17.41■□□□□ 0.38
PTPRF-211ENST00000467464 NBPF1Q3BBV0 1214 aa17.41■□□□□ 0.38
PTPRF-211ENST00000467464 ARHGEF10O15013 1369 aa17.4■□□□□ 0.38
PTPRF-211ENST00000467464 CABLES1Q8TDN4 633 aa17.4■□□□□ 0.38
PTPRF-211ENST00000467464 ABCA3Q99758 1704 aa17.4■□□□□ 0.38
PTPRF-211ENST00000467464 ALS2Q96Q42 1657 aa17.39■□□□□ 0.37
PTPRF-211ENST00000467464 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.38■□□□□ 0.37
PTPRF-211ENST00000467464 L3MBTL2Q969R5 705 aa17.37■□□□□ 0.37
PTPRF-211ENST00000467464 GLI3P10071 1580 aa17.36■□□□□ 0.37
PTPRF-211ENST00000467464 UNC5CLQ8IV45 518 aa17.36■□□□□ 0.37
PTPRF-211ENST00000467464 NUDT16Q96DE0 195 aaKnown RBP17.36■□□□□ 0.37
PTPRF-211ENST00000467464 SIN3AQ96ST3 1273 aa17.36■□□□□ 0.37
PTPRF-211ENST00000467464 GJD4Q96KN9 370 aaPredicted RBP17.35■□□□□ 0.37
PTPRF-211ENST00000467464 GPRASP1Q5JY77 1395 aa17.35■□□□□ 0.37
PTPRF-211ENST00000467464 RALGAPBQ86X10 1494 aa17.35■□□□□ 0.37
PTPRF-211ENST00000467464 TOPAZ1Q8N9V7 1692 aa17.35■□□□□ 0.37
PTPRF-211ENST00000467464 CDK19Q9BWU1 502 aa17.34■□□□□ 0.37
PTPRF-211ENST00000467464 CRYBG1Q9Y4K1 1723 aa17.33■□□□□ 0.37
PTPRF-211ENST00000467464 POLR3AO14802 1390 aaPredicted RBP17.33■□□□□ 0.36
PTPRF-211ENST00000467464 LMOD2Q6P5Q4 547 aa17.33■□□□□ 0.36
PTPRF-211ENST00000467464 PLCH1Q4KWH8 1693 aa17.32■□□□□ 0.36
PTPRF-211ENST00000467464 ATAD2Q6PL18 1390 aa17.31■□□□□ 0.36
PTPRF-211ENST00000467464 FAM83GA6ND36 823 aa17.31■□□□□ 0.36
PTPRF-211ENST00000467464 PLEKHG5O94827 1062 aa17.31■□□□□ 0.36
PTPRF-211ENST00000467464 NGDNQ8NEJ9 315 aaKnown RBP17.31■□□□□ 0.36
PTPRF-211ENST00000467464 ITSN1Q15811 1721 aa17.3■□□□□ 0.36
PTPRF-211ENST00000467464 CENPJQ9HC77 1338 aaPredicted RBP17.3■□□□□ 0.36
PTPRF-211ENST00000467464 PLEKHG3A1L390 1219 aa17.3■□□□□ 0.36
PTPRF-211ENST00000467464 VPS72Q15906 364 aa17.3■□□□□ 0.36
PTPRF-211ENST00000467464 EP400Q96L91 3159 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms