RNA–Protein interactions for RNA: ENST00000467182.1

COL4A1-202, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 3

Gene COL4A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-202ENST00000467182 POLR3GLQ9BT43 218 aa18.03■□□□□ 0.48
COL4A1-202ENST00000467182 STRCQ7RTU9 1775 aa18.02■□□□□ 0.48
COL4A1-202ENST00000467182 ADGRB2O60241 1585 aa18.01■□□□□ 0.47
COL4A1-202ENST00000467182 SAFB2Q14151 953 aaKnown RBP eCLIP18.01■□□□□ 0.47
COL4A1-202ENST00000467182 PUS7Q96PZ0 661 aaKnown RBP18.01■□□□□ 0.47
COL4A1-202ENST00000467182 POGKQ9P215 609 aa18.01■□□□□ 0.47
COL4A1-202ENST00000467182 AMOTL2Q9Y2J4 779 aa18.01■□□□□ 0.47
COL4A1-202ENST00000467182 NWD1Q149M9 1564 aa18■□□□□ 0.47
COL4A1-202ENST00000467182 HSPA2P54652 639 aa18■□□□□ 0.47
COL4A1-202ENST00000467182 EVC2Q86UK5 1308 aa17.99■□□□□ 0.47
COL4A1-202ENST00000467182 MINK1Q8N4C8 1332 aaPredicted RBP17.99■□□□□ 0.47
COL4A1-202ENST00000467182 PER1O15534 1290 aaPredicted RBP17.95■□□□□ 0.46
COL4A1-202ENST00000467182 KCNA6P17658 529 aa17.95■□□□□ 0.46
COL4A1-202ENST00000467182 CABP2Q9NPB3 220 aa17.94■□□□□ 0.46
COL4A1-202ENST00000467182 STRCP1A6NGW2 1772 aa17.94■□□□□ 0.46
COL4A1-202ENST00000467182 CDK19Q9BWU1 502 aa17.93■□□□□ 0.46
COL4A1-202ENST00000467182 PANK3Q9H999 370 aa17.93■□□□□ 0.46
COL4A1-202ENST00000467182 WASLO00401 505 aaPredicted RBP17.91■□□□□ 0.46
COL4A1-202ENST00000467182 ANP32CO43423 234 aa17.91■□□□□ 0.46
COL4A1-202ENST00000467182 NALCNQ8IZF0 1738 aa17.91■□□□□ 0.46
COL4A1-202ENST00000467182 ATAD2Q6PL18 1390 aa17.91■□□□□ 0.46
COL4A1-202ENST00000467182 USP32Q8NFA0 1604 aa17.9■□□□□ 0.46
COL4A1-202ENST00000467182 TOPAZ1Q8N9V7 1692 aa17.9■□□□□ 0.46
COL4A1-202ENST00000467182 CD163L1Q9NR16 1453 aa17.89■□□□□ 0.45
COL4A1-202ENST00000467182 SRPK2P78362 688 aaKnown RBP17.89■□□□□ 0.45
COL4A1-202ENST00000467182 SLC12A5Q9H2X9 1139 aa17.89■□□□□ 0.45
COL4A1-202ENST00000467182 NINLQ9Y2I6 1382 aa17.89■□□□□ 0.45
COL4A1-202ENST00000467182 ATP7BP35670 1465 aa17.88■□□□□ 0.45
COL4A1-202ENST00000467182 PRKRIP1Q9H875 184 aaPredicted RBP17.88■□□□□ 0.45
COL4A1-202ENST00000467182 NKTRP30414 1462 aaKnown RBP17.88■□□□□ 0.45
COL4A1-202ENST00000467182 CARD14Q9BXL6 1004 aa17.87■□□□□ 0.45
COL4A1-202ENST00000467182 FMN2Q9NZ56 1722 aa17.86■□□□□ 0.45
COL4A1-202ENST00000467182 PRR36Q9H6K5 1346 aa17.86■□□□□ 0.45
COL4A1-202ENST00000467182 CDC42BPGQ6DT37 1551 aa17.86■□□□□ 0.45
COL4A1-202ENST00000467182 ANKRD36BQ8N2N9 1353 aa17.85■□□□□ 0.45
COL4A1-202ENST00000467182 TMC1Q8TDI8 760 aa17.84■□□□□ 0.45
COL4A1-202ENST00000467182 ADGRL3Q9HAR2 1447 aa17.83■□□□□ 0.45
COL4A1-202ENST00000467182 NPC1L1Q9UHC9 1359 aa17.83■□□□□ 0.45
COL4A1-202ENST00000467182 CCER2I3L3R5 266 aa17.83■□□□□ 0.44
COL4A1-202ENST00000467182 AMER1Q5JTC6 1135 aaPredicted RBP17.83■□□□□ 0.44
COL4A1-202ENST00000467182 NUDT16Q96DE0 195 aaKnown RBP17.83■□□□□ 0.44
COL4A1-202ENST00000467182 A0A1W2PP64 1363 aa17.82■□□□□ 0.44
COL4A1-202ENST00000467182 PARD3Q8TEW0 1356 aa17.82■□□□□ 0.44
COL4A1-202ENST00000467182 RGPD8O14715 1765 aaPredicted RBP17.82■□□□□ 0.44
COL4A1-202ENST00000467182 AKAP12Q02952 1782 aa17.82■□□□□ 0.44
COL4A1-202ENST00000467182 PPIP5K1Q6PFW1 1433 aa17.81■□□□□ 0.44
COL4A1-202ENST00000467182 NSD3Q9BZ95 1437 aa17.81■□□□□ 0.44
COL4A1-202ENST00000467182 ITSN1Q15811 1721 aa17.81■□□□□ 0.44
COL4A1-202ENST00000467182 MON2Q7Z3U7 1717 aa17.81■□□□□ 0.44
COL4A1-202ENST00000467182 KTN1Q86UP2 1357 aaKnown RBP17.8■□□□□ 0.44
COL4A1-202ENST00000467182 XIRP1Q702N8 1843 aaKnown RBP17.8■□□□□ 0.44
COL4A1-202ENST00000467182 CABP1Q9NZU7 370 aa17.8■□□□□ 0.44
COL4A1-202ENST00000467182 CPSF1Q10570 1443 aaKnown RBP17.8■□□□□ 0.44
COL4A1-202ENST00000467182 RBM33Q96EV2 1170 aaKnown RBP17.79■□□□□ 0.44
COL4A1-202ENST00000467182 KNSTRNQ9Y448 316 aa17.79■□□□□ 0.44
COL4A1-202ENST00000467182 ANKARQ7Z5J8 1434 aa17.79■□□□□ 0.44
COL4A1-202ENST00000467182 CCDC61Q9Y6R9 512 aa17.78■□□□□ 0.44
COL4A1-202ENST00000467182 RALBP1Q15311 655 aa17.77■□□□□ 0.44
COL4A1-202ENST00000467182 NCOA3Q9Y6Q9 1424 aa17.77■□□□□ 0.44
COL4A1-202ENST00000467182 NRKQ7Z2Y5 1582 aa17.76■□□□□ 0.43
COL4A1-202ENST00000467182 PLEKHG3A1L390 1219 aa17.76■□□□□ 0.43
COL4A1-202ENST00000467182 CC2D1BQ5T0F9 858 aaKnown RBP17.76■□□□□ 0.43
COL4A1-202ENST00000467182 PROSER2Q86WR7 435 aaPredicted RBP17.76■□□□□ 0.43
COL4A1-202ENST00000467182 ANKRD26Q9UPS8 1709 aa17.75■□□□□ 0.43
COL4A1-202ENST00000467182 CCDC184Q52MB2 194 aa17.75■□□□□ 0.43
COL4A1-202ENST00000467182 TERF2IPQ9NYB0 399 aa17.75■□□□□ 0.43
COL4A1-202ENST00000467182 KIF20BQ96Q89 1820 aa17.75■□□□□ 0.43
COL4A1-202ENST00000467182 CNGB1Q14028 1251 aaPredicted RBP17.74■□□□□ 0.43
COL4A1-202ENST00000467182 TMEM94Q12767 1356 aa17.74■□□□□ 0.43
COL4A1-202ENST00000467182 LRRC7Q96NW7 1537 aa17.73■□□□□ 0.43
COL4A1-202ENST00000467182 HDGFL2Q7Z4V5 671 aaPredicted RBP17.73■□□□□ 0.43
COL4A1-202ENST00000467182 MYBBP1AQ9BQG0 1328 aaKnown RBP17.72■□□□□ 0.43
COL4A1-202ENST00000467182 ZNF335Q9H4Z2 1342 aaPredicted RBP17.72■□□□□ 0.43
COL4A1-202ENST00000467182 NUTM2FA1L443 756 aa17.72■□□□□ 0.43
COL4A1-202ENST00000467182 POLR3AO14802 1390 aaPredicted RBP17.71■□□□□ 0.43
COL4A1-202ENST00000467182 DMRT2Q9Y5R5 561 aa17.71■□□□□ 0.43
COL4A1-202ENST00000467182 EDC4Q6P2E9 1401 aaKnown RBP17.71■□□□□ 0.43
COL4A1-202ENST00000467182 NSD2O96028 1365 aa17.7■□□□□ 0.42
COL4A1-202ENST00000467182 DCCP43146 1447 aa17.7■□□□□ 0.42
COL4A1-202ENST00000467182 SSH2Q76I76 1423 aa17.7■□□□□ 0.42
COL4A1-202ENST00000467182 ACEP12821 1306 aa17.7■□□□□ 0.42
COL4A1-202ENST00000467182 CGNL1Q0VF96 1302 aa17.7■□□□□ 0.42
COL4A1-202ENST00000467182 USP6P35125 1406 aa17.68■□□□□ 0.42
COL4A1-202ENST00000467182 C19orf44Q9H6X5 657 aa17.68■□□□□ 0.42
COL4A1-202ENST00000467182 BRD4O60885 1362 aaPredicted RBP17.67■□□□□ 0.42
COL4A1-202ENST00000467182 FYB1O15117 783 aa17.67■□□□□ 0.42
COL4A1-202ENST00000467182 ZNF692Q9BU19 519 aaPredicted RBP17.67■□□□□ 0.42
COL4A1-202ENST00000467182 MST1RQ04912 1400 aa17.66■□□□□ 0.42
COL4A1-202ENST00000467182 PPP2R1AP30153 589 aa17.66■□□□□ 0.42
COL4A1-202ENST00000467182 C14orf37Q86TY3 774 aa17.66■□□□□ 0.42
COL4A1-202ENST00000467182 C1orf167Q5SNV9 1468 aa17.66■□□□□ 0.42
COL4A1-202ENST00000467182 NLRP13Q86W25 1043 aa17.65■□□□□ 0.42
COL4A1-202ENST00000467182 PMFBP1Q8TBY8 1022 aa17.65■□□□□ 0.42
COL4A1-202ENST00000467182 MRS2Q9HD23 443 aa17.64■□□□□ 0.41
COL4A1-202ENST00000467182 LTBP4Q8N2S1 1624 aa17.64■□□□□ 0.41
COL4A1-202ENST00000467182 KIF1AQ12756 1690 aa17.64■□□□□ 0.41
COL4A1-202ENST00000467182 GGNBP2Q9H3C7 697 aa17.63■□□□□ 0.41
COL4A1-202ENST00000467182 USP54Q70EL1 1684 aa17.62■□□□□ 0.41
COL4A1-202ENST00000467182 MORC1Q86VD1 984 aa17.62■□□□□ 0.41
COL4A1-202ENST00000467182 PHF8Q9UPP1 1060 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms