RNA–Protein interactions for RNA: ENST00000466054.1

LRCH3-211, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 2

Gene LRCH3, Length 683 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-211ENST00000466054 GCGRP47871 477 aa11.15□□□□□ -0.62
LRCH3-211ENST00000466054 SMPD1P17405 629 aa11.14□□□□□ -0.63
LRCH3-211ENST00000466054 TRIM32Q13049 653 aa11.14□□□□□ -0.63
LRCH3-211ENST00000466054 MSS51Q4VC12 460 aa11.14□□□□□ -0.63
LRCH3-211ENST00000466054 BRICD5Q6PL45 260 aa11.14□□□□□ -0.63
LRCH3-211ENST00000466054 TERTO14746 1132 aaKnown RBP11.13□□□□□ -0.63
LRCH3-211ENST00000466054 GNPATO15228 680 aa11.13□□□□□ -0.63
LRCH3-211ENST00000466054 SNRPBP14678 240 aaKnown RBP11.13□□□□□ -0.63
LRCH3-211ENST00000466054 SMYD5Q6GMV2 418 aa11.13□□□□□ -0.63
LRCH3-211ENST00000466054 Q3C1V9 767 aa11.12□□□□□ -0.63
LRCH3-211ENST00000466054 NLRP7Q8WX94 980 aa11.12□□□□□ -0.63
LRCH3-211ENST00000466054 TRIM47Q96LD4 638 aa11.12□□□□□ -0.63
LRCH3-211ENST00000466054 REPIN1Q9BWE0 567 aaKnown RBP11.12□□□□□ -0.63
LRCH3-211ENST00000466054 FAM181BA6NEQ2 426 aa11.11□□□□□ -0.63
LRCH3-211ENST00000466054 KIFC2Q96AC6 838 aa11.11□□□□□ -0.63
LRCH3-211ENST00000466054 MRGPRX2Q96LB1 330 aa11.11□□□□□ -0.63
LRCH3-211ENST00000466054 RNF19BQ6ZMZ0 732 aa11.1□□□□□ -0.63
LRCH3-211ENST00000466054 J3QL48 77 aa11.09□□□□□ -0.63
LRCH3-211ENST00000466054 RBM26Q5T8P6 1007 aaKnown RBP11.09□□□□□ -0.63
LRCH3-211ENST00000466054 SLC16A10Q8TF71 515 aa11.08□□□□□ -0.64
LRCH3-211ENST00000466054 CCDC24Q8N4L8 307 aa11.07□□□□□ -0.64
LRCH3-211ENST00000466054 HPS1Q92902 700 aa11.05□□□□□ -0.64
LRCH3-211ENST00000466054 MMP16P51512 607 aa11.03□□□□□ -0.64
LRCH3-211ENST00000466054 USB1Q9BQ65 265 aaKnown RBP11.02□□□□□ -0.65
LRCH3-211ENST00000466054 RC3H1Q5TC82 1133 aaKnown RBP11.01□□□□□ -0.65
LRCH3-211ENST00000466054 ALDH1A1P00352 501 aa11□□□□□ -0.65
LRCH3-211ENST00000466054 TESPA1A2RU30 521 aaPredicted RBP10.99□□□□□ -0.65
LRCH3-211ENST00000466054 DXOO77932 396 aaKnown RBP10.98□□□□□ -0.65
LRCH3-211ENST00000466054 WNT7BP56706 349 aa10.98□□□□□ -0.65
LRCH3-211ENST00000466054 LCE2CQ5TA81 110 aa10.97□□□□□ -0.65
LRCH3-211ENST00000466054 PHOX2BQ99453 314 aa10.97□□□□□ -0.65
LRCH3-211ENST00000466054 KDM4AO75164 1064 aa10.96□□□□□ -0.65
LRCH3-211ENST00000466054 NXF1Q9UBU9 619 aaKnown RBP10.96□□□□□ -0.65
LRCH3-211ENST00000466054 IRF7Q92985 503 aa10.95□□□□□ -0.66
LRCH3-211ENST00000466054 WASF2Q9Y6W5 498 aa10.95□□□□□ -0.66
LRCH3-211ENST00000466054 GPR37O15354 613 aa10.94□□□□□ -0.66
LRCH3-211ENST00000466054 GPIHBP1Q8IV16 184 aa10.94□□□□□ -0.66
LRCH3-211ENST00000466054 ZSCAN1Q8NBB4 408 aa10.94□□□□□ -0.66
LRCH3-211ENST00000466054 SLC24A1O60721 1099 aa10.93□□□□□ -0.66
LRCH3-211ENST00000466054 GMPRP36959 345 aa10.92□□□□□ -0.66
LRCH3-211ENST00000466054 USP46P62068 366 aa10.92□□□□□ -0.66
LRCH3-211ENST00000466054 SKOR1P84550 965 aa10.92□□□□□ -0.66
LRCH3-211ENST00000466054 EHBP1Q8NDI1 1231 aa10.92□□□□□ -0.66
LRCH3-211ENST00000466054 CAPN5O15484 640 aaPredicted RBP10.91□□□□□ -0.66
LRCH3-211ENST00000466054 CD46P15529 392 aa10.91□□□□□ -0.66
LRCH3-211ENST00000466054 BMP1P13497 986 aa10.9□□□□□ -0.66
LRCH3-211ENST00000466054 NPAS3Q8IXF0 933 aa10.89□□□□□ -0.67
LRCH3-211ENST00000466054 JUNDP17535 347 aa10.87□□□□□ -0.67
LRCH3-211ENST00000466054 VEGFBP49765 207 aa10.87□□□□□ -0.67
LRCH3-211ENST00000466054 PLCB2Q00722 1185 aa10.86□□□□□ -0.67
LRCH3-211ENST00000466054 HLA-CQ95604 372 aa10.86□□□□□ -0.67
LRCH3-211ENST00000466054 NUDT12Q9BQG2 462 aa10.85□□□□□ -0.67
LRCH3-211ENST00000466054 HOXA2O43364 376 aa10.83□□□□□ -0.68
LRCH3-211ENST00000466054 MDM2Q00987 491 aaPredicted RBP10.83□□□□□ -0.68
LRCH3-211ENST00000466054 TRIM46Q7Z4K8 759 aa10.83□□□□□ -0.68
LRCH3-211ENST00000466054 H3BM21 787 aa10.82□□□□□ -0.68
LRCH3-211ENST00000466054 GUCA2AQ02747 115 aa10.8□□□□□ -0.68
LRCH3-211ENST00000466054 MAP2K5Q13163 448 aa10.8□□□□□ -0.68
LRCH3-211ENST00000466054 NUTM1Q86Y26 1132 aa10.8□□□□□ -0.68
LRCH3-211ENST00000466054 LOC100996750A0A140TA64 210 aa10.79□□□□□ -0.68
LRCH3-211ENST00000466054 SIAH2O43255 324 aa10.79□□□□□ -0.68
LRCH3-211ENST00000466054 SCARF1Q14162 830 aa10.79□□□□□ -0.68
LRCH3-211ENST00000466054 RETREG3Q86VR2 466 aa10.79□□□□□ -0.68
LRCH3-211ENST00000466054 SYMPKQ92797 1274 aaKnown RBP10.79□□□□□ -0.68
LRCH3-211ENST00000466054 KRTAP4-6Q9BYQ5 205 aa10.79□□□□□ -0.68
LRCH3-211ENST00000466054 KRI1Q8N9T8 703 aaKnown RBP10.78□□□□□ -0.68
LRCH3-211ENST00000466054 ZFP42Q96MM3 310 aa10.78□□□□□ -0.68
LRCH3-211ENST00000466054 PTCRAQ6ISU1 281 aaPredicted RBP10.77□□□□□ -0.69
LRCH3-211ENST00000466054 ERBB4Q15303 1308 aa10.77□□□□□ -0.69
LRCH3-211ENST00000466054 PLEKHG3A1L390 1219 aa10.76□□□□□ -0.69
LRCH3-211ENST00000466054 C6orf229H3BNL8 230 aa10.76□□□□□ -0.69
LRCH3-211ENST00000466054 TULP1O00294 542 aaPredicted RBP10.76□□□□□ -0.69
LRCH3-211ENST00000466054 CCNYL3P0C7X3 344 aa10.76□□□□□ -0.69
LRCH3-211ENST00000466054 MS4A1P11836 297 aa10.76□□□□□ -0.69
LRCH3-211ENST00000466054 SH3BP2P78314 561 aa10.75□□□□□ -0.69
LRCH3-211ENST00000466054 LINC01559Q495D7 138 aa10.74□□□□□ -0.69
LRCH3-211ENST00000466054 IRF6O14896 467 aa10.73□□□□□ -0.69
LRCH3-211ENST00000466054 LORP23490 312 aaPredicted RBP10.73□□□□□ -0.69
LRCH3-211ENST00000466054 TLL2Q9Y6L7 1015 aa10.73□□□□□ -0.69
LRCH3-211ENST00000466054 CLCN1P35523 988 aa10.72□□□□□ -0.69
LRCH3-211ENST00000466054 PURBQ96QR8 312 aaKnown RBP10.72□□□□□ -0.69
LRCH3-211ENST00000466054 FDX1P10109 184 aa10.71□□□□□ -0.69
LRCH3-211ENST00000466054 NNTQ13423 1086 aa10.71□□□□□ -0.69
LRCH3-211ENST00000466054 MRPL14Q6P1L8 145 aaKnown RBP10.71□□□□□ -0.69
LRCH3-211ENST00000466054 UNC93B1Q9H1C4 597 aa10.71□□□□□ -0.69
LRCH3-211ENST00000466054 GPCPD1Q9NPB8 672 aa10.71□□□□□ -0.69
LRCH3-211ENST00000466054 MINK1Q8N4C8 1332 aaPredicted RBP10.69□□□□□ -0.7
LRCH3-211ENST00000466054 WDR4P57081 412 aaKnown RBP10.69□□□□□ -0.7
LRCH3-211ENST00000466054 BAP1Q92560 729 aa10.69□□□□□ -0.7
LRCH3-211ENST00000466054 ADH1CP00326 375 aa10.68□□□□□ -0.7
LRCH3-211ENST00000466054 VARSP26640 1264 aaKnown RBP10.68□□□□□ -0.7
LRCH3-211ENST00000466054 PTPRNQ16849 979 aa10.68□□□□□ -0.7
LRCH3-211ENST00000466054 HAP1P54257 671 aaPredicted RBP10.67□□□□□ -0.7
LRCH3-211ENST00000466054 FAM217BQ9NTX9 383 aaPredicted RBP10.67□□□□□ -0.7
LRCH3-211ENST00000466054 MAN1A2O60476 641 aa10.66□□□□□ -0.7
LRCH3-211ENST00000466054 ZNF511Q8NB15 262 aa10.66□□□□□ -0.7
LRCH3-211ENST00000466054 CCDC102AQ96A19 550 aa10.66□□□□□ -0.7
LRCH3-211ENST00000466054 SOBPA7XYQ1 873 aa10.65□□□□□ -0.7
LRCH3-211ENST00000466054 EVA1BQ9NVM1 165 aa10.65□□□□□ -0.7
LRCH3-211ENST00000466054 KCNH2Q12809 1159 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms