RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-210ENST00000463041 TECPR2O15040 1411 aa10.67□□□□□ -0.7
PTPRF-210ENST00000463041 NHSL1Q5SYE7 1610 aa10.66□□□□□ -0.7
PTPRF-210ENST00000463041 NUTM2BA6NNL0 878 aaPredicted RBP10.66□□□□□ -0.7
PTPRF-210ENST00000463041 NUTM2EB1AL46 878 aaPredicted RBP10.66□□□□□ -0.7
PTPRF-210ENST00000463041 ZNF772Q68DY9 489 aaPredicted RBP10.66□□□□□ -0.7
PTPRF-210ENST00000463041 NUTM2AQ8IVF1 878 aaPredicted RBP10.66□□□□□ -0.7
PTPRF-210ENST00000463041 YTHDC2Q9H6S0 1430 aaKnown RBP10.66□□□□□ -0.7
PTPRF-210ENST00000463041 SOS2Q07890 1332 aaPredicted RBP10.65□□□□□ -0.7
PTPRF-210ENST00000463041 ESCO1Q5FWF5 840 aa10.65□□□□□ -0.7
PTPRF-210ENST00000463041 DCAF11Q8TEB1 546 aa10.65□□□□□ -0.7
PTPRF-210ENST00000463041 NRXN1Q9ULB1 1477 aa10.65□□□□□ -0.7
PTPRF-210ENST00000463041 MYOM2P54296 1465 aa10.64□□□□□ -0.71
PTPRF-210ENST00000463041 KDM2AQ9Y2K7 1162 aa10.64□□□□□ -0.71
PTPRF-210ENST00000463041 NPHP3Q7Z494 1330 aa10.63□□□□□ -0.71
PTPRF-210ENST00000463041 LAMC1P11047 1609 aa10.63□□□□□ -0.71
PTPRF-210ENST00000463041 KNDC1Q76NI1 1749 aa10.63□□□□□ -0.71
PTPRF-210ENST00000463041 LRP6O75581 1613 aa10.62□□□□□ -0.71
PTPRF-210ENST00000463041 FOXO3O43524 673 aa10.62□□□□□ -0.71
PTPRF-210ENST00000463041 POGKQ9P215 609 aa10.62□□□□□ -0.71
PTPRF-210ENST00000463041 PNPLA6Q8IY17 1366 aa10.62□□□□□ -0.71
PTPRF-210ENST00000463041 PLEKHH1Q9ULM0 1364 aa10.62□□□□□ -0.71
PTPRF-210ENST00000463041 CDC42BPGQ6DT37 1551 aa10.61□□□□□ -0.71
PTPRF-210ENST00000463041 NUTM2FA1L443 756 aa10.61□□□□□ -0.71
PTPRF-210ENST00000463041 PRAM1Q96QH2 718 aa10.61□□□□□ -0.71
PTPRF-210ENST00000463041 RXRBP28702 533 aa10.6□□□□□ -0.71
PTPRF-210ENST00000463041 NGLY1Q96IV0 654 aa10.6□□□□□ -0.71
PTPRF-210ENST00000463041 AFF2P51816 1311 aa10.59□□□□□ -0.71
PTPRF-210ENST00000463041 C8orf37Q96NL8 207 aa10.59□□□□□ -0.71
PTPRF-210ENST00000463041 QTRT2Q9H974 415 aaKnown RBP10.59□□□□□ -0.71
PTPRF-210ENST00000463041 TRAK1Q9UPV9 953 aa10.59□□□□□ -0.71
PTPRF-210ENST00000463041 ADAMTS2O95450 1211 aa10.58□□□□□ -0.72
PTPRF-210ENST00000463041 PSME1Q06323 249 aa10.58□□□□□ -0.72
PTPRF-210ENST00000463041 SAFB2Q14151 953 aaKnown RBP eCLIP10.58□□□□□ -0.72
PTPRF-210ENST00000463041 KRT28Q7Z3Y7 464 aa10.58□□□□□ -0.72
PTPRF-210ENST00000463041 PHF8Q9UPP1 1060 aa10.58□□□□□ -0.72
PTPRF-210ENST00000463041 DLC1Q96QB1 1528 aa10.58□□□□□ -0.72
PTPRF-210ENST00000463041 RGPD8O14715 1765 aaPredicted RBP10.57□□□□□ -0.72
PTPRF-210ENST00000463041 FMN2Q9NZ56 1722 aa10.57□□□□□ -0.72
PTPRF-210ENST00000463041 RBM6P78332 1123 aaKnown RBP10.56□□□□□ -0.72
PTPRF-210ENST00000463041 XPCQ01831 940 aaPredicted RBP10.56□□□□□ -0.72
PTPRF-210ENST00000463041 FNBP4Q8N3X1 1017 aaPredicted RBP10.56□□□□□ -0.72
PTPRF-210ENST00000463041 ADGRB1O14514 1584 aa10.56□□□□□ -0.72
PTPRF-210ENST00000463041 SPATA31A3Q5VYP0 1347 aa10.56□□□□□ -0.72
PTPRF-210ENST00000463041 PXDNQ92626 1479 aa10.55□□□□□ -0.72
PTPRF-210ENST00000463041 WASLO00401 505 aaPredicted RBP10.54□□□□□ -0.72
PTPRF-210ENST00000463041 USP21Q9UK80 565 aa10.54□□□□□ -0.72
PTPRF-210ENST00000463041 COL22A1Q8NFW1 1626 aaPredicted RBP10.54□□□□□ -0.72
PTPRF-210ENST00000463041 MINK1Q8N4C8 1332 aaPredicted RBP10.54□□□□□ -0.72
PTPRF-210ENST00000463041 KIF1AQ12756 1690 aa10.53□□□□□ -0.72
PTPRF-210ENST00000463041 ANKARQ7Z5J8 1434 aa10.53□□□□□ -0.72
PTPRF-210ENST00000463041 HIRIP3Q9BW71 556 aaPredicted RBP10.53□□□□□ -0.72
PTPRF-210ENST00000463041 TRPC5Q9UL62 973 aaPredicted RBP10.53□□□□□ -0.72
PTPRF-210ENST00000463041 CDK12Q9NYV4 1490 aaPredicted RBP10.53□□□□□ -0.72
PTPRF-210ENST00000463041 EIF3AQ14152 1382 aaKnown RBP10.52□□□□□ -0.72
PTPRF-210ENST00000463041 PMFBP1Q8TBY8 1022 aa10.52□□□□□ -0.73
PTPRF-210ENST00000463041 SBNO1A3KN83 1393 aa10.52□□□□□ -0.73
PTPRF-210ENST00000463041 KIAA1210Q9ULL0 1709 aa10.51□□□□□ -0.73
PTPRF-210ENST00000463041 NBPF1Q3BBV0 1214 aa10.5□□□□□ -0.73
PTPRF-210ENST00000463041 LMOD2Q6P5Q4 547 aa10.5□□□□□ -0.73
PTPRF-210ENST00000463041 UPF1Q92900 1129 aaKnown RBP eCLIP10.5□□□□□ -0.73
PTPRF-210ENST00000463041 L3MBTL2Q969R5 705 aa10.5□□□□□ -0.73
PTPRF-210ENST00000463041 ADGRB2O60241 1585 aa10.5□□□□□ -0.73
PTPRF-210ENST00000463041 ARHGEF10O15013 1369 aa10.5□□□□□ -0.73
PTPRF-210ENST00000463041 GPRASP1Q5JY77 1395 aa10.5□□□□□ -0.73
PTPRF-210ENST00000463041 MARF1Q9Y4F3 1742 aaKnown RBP10.5□□□□□ -0.73
PTPRF-210ENST00000463041 HAP1P54257 671 aaPredicted RBP10.49□□□□□ -0.73
PTPRF-210ENST00000463041 NGDNQ8NEJ9 315 aaKnown RBP10.49□□□□□ -0.73
PTPRF-210ENST00000463041 NUDT16Q96DE0 195 aaKnown RBP10.49□□□□□ -0.73
PTPRF-210ENST00000463041 SIN3AQ96ST3 1273 aa10.49□□□□□ -0.73
PTPRF-210ENST00000463041 CDK19Q9BWU1 502 aa10.49□□□□□ -0.73
PTPRF-210ENST00000463041 PRR36Q9H6K5 1346 aa10.49□□□□□ -0.73
PTPRF-210ENST00000463041 NEUROD1Q13562 356 aa10.48□□□□□ -0.73
PTPRF-210ENST00000463041 UNC5CLQ8IV45 518 aa10.48□□□□□ -0.73
PTPRF-210ENST00000463041 CCDC61Q9Y6R9 512 aa10.48□□□□□ -0.73
PTPRF-210ENST00000463041 TNS3Q68CZ2 1445 aa10.48□□□□□ -0.73
PTPRF-210ENST00000463041 USP32Q8NFA0 1604 aa10.47□□□□□ -0.73
PTPRF-210ENST00000463041 ARHGEF28Q8N1W1 1705 aaKnown RBP10.47□□□□□ -0.73
PTPRF-210ENST00000463041 CABLES1Q8TDN4 633 aa10.47□□□□□ -0.73
PTPRF-210ENST00000463041 GJD4Q96KN9 370 aaPredicted RBP10.47□□□□□ -0.73
PTPRF-210ENST00000463041 ATRNO75882 1429 aa10.47□□□□□ -0.73
PTPRF-210ENST00000463041 BCL9LQ86UU0 1499 aa10.47□□□□□ -0.73
PTPRF-210ENST00000463041 TULP4Q9NRJ4 1543 aa10.47□□□□□ -0.73
PTPRF-210ENST00000463041 PLEKHG3A1L390 1219 aa10.46□□□□□ -0.73
PTPRF-210ENST00000463041 CENPJQ9HC77 1338 aaPredicted RBP10.45□□□□□ -0.74
PTPRF-210ENST00000463041 FAM83GA6ND36 823 aa10.45□□□□□ -0.74
PTPRF-210ENST00000463041 PAK3O75914 559 aaPredicted RBP10.45□□□□□ -0.74
PTPRF-210ENST00000463041 NBPF8Q3BBV2 869 aa10.45□□□□□ -0.74
PTPRF-210ENST00000463041 SLIT2O94813 1529 aa10.44□□□□□ -0.74
PTPRF-210ENST00000463041 RGS12O14924 1447 aa10.44□□□□□ -0.74
PTPRF-210ENST00000463041 PLEKHG5O94827 1062 aa10.44□□□□□ -0.74
PTPRF-210ENST00000463041 TRIM26Q12899 539 aaPredicted RBP10.44□□□□□ -0.74
PTPRF-210ENST00000463041 ITSN1Q15811 1721 aa10.44□□□□□ -0.74
PTPRF-210ENST00000463041 ACEP12821 1306 aa10.43□□□□□ -0.74
PTPRF-210ENST00000463041 VPS72Q15906 364 aa10.43□□□□□ -0.74
PTPRF-210ENST00000463041 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.42□□□□□ -0.74
PTPRF-210ENST00000463041 TRPM3Q9HCF6 1732 aaPredicted RBP10.42□□□□□ -0.74
PTPRF-210ENST00000463041 ONECUT3O60422 494 aaPredicted RBP10.42□□□□□ -0.74
PTPRF-210ENST00000463041 SRPK2P78362 688 aaKnown RBP10.42□□□□□ -0.74
PTPRF-210ENST00000463041 CCDC125Q86Z20 511 aa10.42□□□□□ -0.74
PTPRF-210ENST00000463041 ATP7BP35670 1465 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms