RNA–Protein interactions for RNA: ENST00000462700.5

COL9A3-203, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 1,237 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-203ENST00000462700 DISP3Q9P2K9 1392 aa27.25■■□□□ 1.95
COL9A3-203ENST00000462700 L3MBTL2Q969R5 705 aa27.25■■□□□ 1.95
COL9A3-203ENST00000462700 COL16A1Q07092 1604 aaPredicted RBP27.25■■□□□ 1.95
COL9A3-203ENST00000462700 MED1Q15648 1581 aaPredicted RBP27.24■■□□□ 1.95
COL9A3-203ENST00000462700 PRAM1Q96QH2 718 aa27.24■■□□□ 1.95
COL9A3-203ENST00000462700 TRAK1Q9UPV9 953 aa27.23■■□□□ 1.95
COL9A3-203ENST00000462700 KIAA1210Q9ULL0 1709 aa27.21■■□□□ 1.95
COL9A3-203ENST00000462700 POGKQ9P215 609 aa27.19■■□□□ 1.94
COL9A3-203ENST00000462700 NHSL1Q5SYE7 1610 aa27.19■■□□□ 1.94
COL9A3-203ENST00000462700 SAFB2Q14151 953 aaKnown RBP eCLIP27.18■■□□□ 1.94
COL9A3-203ENST00000462700 ORAI2Q96SN7 254 aa27.18■■□□□ 1.94
COL9A3-203ENST00000462700 JCADQ9P266 1359 aa27.18■■□□□ 1.94
COL9A3-203ENST00000462700 FMN2Q9NZ56 1722 aa27.15■■□□□ 1.94
COL9A3-203ENST00000462700 NBPF1Q3BBV0 1214 aa27.14■■□□□ 1.94
COL9A3-203ENST00000462700 NUTM2FA1L443 756 aa27.13■■□□□ 1.93
COL9A3-203ENST00000462700 DDX17Q92841 729 aaKnown RBP27.13■■□□□ 1.93
COL9A3-203ENST00000462700 PCGF6Q9BYE7 350 aa27.13■■□□□ 1.93
COL9A3-203ENST00000462700 ADGRB2O60241 1585 aa27.13■■□□□ 1.93
COL9A3-203ENST00000462700 ESCO1Q5FWF5 840 aa27.12■■□□□ 1.93
COL9A3-203ENST00000462700 ARHGEF28Q8N1W1 1705 aaKnown RBP27.12■■□□□ 1.93
COL9A3-203ENST00000462700 SHPRHQ149N8 1683 aa27.08■■□□□ 1.92
COL9A3-203ENST00000462700 HIRIP3Q9BW71 556 aaPredicted RBP27.07■■□□□ 1.92
COL9A3-203ENST00000462700 MINK1Q8N4C8 1332 aaPredicted RBP27.07■■□□□ 1.92
COL9A3-203ENST00000462700 TONSLQ96HA7 1378 aa27.07■■□□□ 1.92
COL9A3-203ENST00000462700 TRPM1Q7Z4N2 1603 aa27.06■■□□□ 1.92
COL9A3-203ENST00000462700 LRRC59Q96AG4 307 aaKnown RBP27.06■■□□□ 1.92
COL9A3-203ENST00000462700 SOS2Q07890 1332 aaPredicted RBP27.06■■□□□ 1.92
COL9A3-203ENST00000462700 SPATA31A6Q5VVP1 1343 aa27.05■■□□□ 1.92
COL9A3-203ENST00000462700 PHF23Q9BUL5 403 aaPredicted RBP27.04■■□□□ 1.92
COL9A3-203ENST00000462700 NPHP3Q7Z494 1330 aa27.04■■□□□ 1.92
COL9A3-203ENST00000462700 ANKARQ7Z5J8 1434 aa27.03■■□□□ 1.92
COL9A3-203ENST00000462700 KIF1AQ12756 1690 aa27.01■■□□□ 1.92
COL9A3-203ENST00000462700 FOXO3O43524 673 aa27.01■■□□□ 1.91
COL9A3-203ENST00000462700 NBPF8Q3BBV2 869 aa27.01■■□□□ 1.91
COL9A3-203ENST00000462700 USP32Q8NFA0 1604 aa27.01■■□□□ 1.91
COL9A3-203ENST00000462700 PXDNQ92626 1479 aa27■■□□□ 1.91
COL9A3-203ENST00000462700 EIF3AQ14152 1382 aaKnown RBP27■■□□□ 1.91
COL9A3-203ENST00000462700 PNPLA6Q8IY17 1366 aa27■■□□□ 1.91
COL9A3-203ENST00000462700 WASLO00401 505 aaPredicted RBP27■■□□□ 1.91
COL9A3-203ENST00000462700 LRP6O75581 1613 aa27■■□□□ 1.91
COL9A3-203ENST00000462700 TULP4Q9NRJ4 1543 aa27■■□□□ 1.91
COL9A3-203ENST00000462700 ROCK2O75116 1388 aaKnown RBP26.99■■□□□ 1.91
COL9A3-203ENST00000462700 ILDR2Q71H61 639 aa26.98■■□□□ 1.91
COL9A3-203ENST00000462700 PHF8Q9UPP1 1060 aa26.98■■□□□ 1.91
COL9A3-203ENST00000462700 RGPD8O14715 1765 aaPredicted RBP26.96■■□□□ 1.91
COL9A3-203ENST00000462700 PRR36Q9H6K5 1346 aa26.95■■□□□ 1.91
COL9A3-203ENST00000462700 CENPJQ9HC77 1338 aaPredicted RBP26.95■■□□□ 1.91
COL9A3-203ENST00000462700 XPCQ01831 940 aaPredicted RBP26.95■■□□□ 1.9
COL9A3-203ENST00000462700 GPRASP1Q5JY77 1395 aa26.94■■□□□ 1.9
COL9A3-203ENST00000462700 NUTM2BA6NNL0 878 aaPredicted RBP26.92■■□□□ 1.9
COL9A3-203ENST00000462700 NUTM2EB1AL46 878 aaPredicted RBP26.92■■□□□ 1.9
COL9A3-203ENST00000462700 NUTM2AQ8IVF1 878 aaPredicted RBP26.92■■□□□ 1.9
COL9A3-203ENST00000462700 RGS17Q9UGC6 210 aaPredicted RBP26.92■■□□□ 1.9
COL9A3-203ENST00000462700 CLSPNQ9HAW4 1339 aa26.91■■□□□ 1.9
COL9A3-203ENST00000462700 ATP7BP35670 1465 aa26.91■■□□□ 1.9
COL9A3-203ENST00000462700 RALGAPBQ86X10 1494 aa26.91■■□□□ 1.9
COL9A3-203ENST00000462700 MEX3CQ5U5Q3 659 aaKnown RBP26.9■■□□□ 1.9
COL9A3-203ENST00000462700 PMFBP1Q8TBY8 1022 aa26.9■■□□□ 1.9
COL9A3-203ENST00000462700 CDK19Q9BWU1 502 aa26.9■■□□□ 1.9
COL9A3-203ENST00000462700 QRICH2Q9H0J4 1663 aa26.89■■□□□ 1.9
COL9A3-203ENST00000462700 KRT28Q7Z3Y7 464 aa26.89■■□□□ 1.9
COL9A3-203ENST00000462700 COL22A1Q8NFW1 1626 aaPredicted RBP26.88■■□□□ 1.89
COL9A3-203ENST00000462700 NUDT16Q96DE0 195 aaKnown RBP26.87■■□□□ 1.89
COL9A3-203ENST00000462700 SPATA31A3Q5VYP0 1347 aa26.86■■□□□ 1.89
COL9A3-203ENST00000462700 PSME1Q06323 249 aa26.85■■□□□ 1.89
COL9A3-203ENST00000462700 CARD11Q9BXL7 1154 aa26.85■■□□□ 1.89
COL9A3-203ENST00000462700 TNS3Q68CZ2 1445 aa26.83■■□□□ 1.89
COL9A3-203ENST00000462700 ITSN1Q15811 1721 aa26.83■■□□□ 1.89
COL9A3-203ENST00000462700 SBNO1A3KN83 1393 aa26.83■■□□□ 1.88
COL9A3-203ENST00000462700 TOPAZ1Q8N9V7 1692 aa26.81■■□□□ 1.88
COL9A3-203ENST00000462700 SRPK2P78362 688 aaKnown RBP26.8■■□□□ 1.88
COL9A3-203ENST00000462700 POTEAQ6S8J7 498 aa26.79■■□□□ 1.88
COL9A3-203ENST00000462700 NGDNQ8NEJ9 315 aaKnown RBP26.79■■□□□ 1.88
COL9A3-203ENST00000462700 TIMELESSQ9UNS1 1208 aa26.79■■□□□ 1.88
COL9A3-203ENST00000462700 CCDC61Q9Y6R9 512 aa26.79■■□□□ 1.88
COL9A3-203ENST00000462700 ADAMTS2O95450 1211 aa26.78■■□□□ 1.88
COL9A3-203ENST00000462700 CABP2Q9NPB3 220 aa26.78■■□□□ 1.88
COL9A3-203ENST00000462700 CCER1Q8TC90 406 aaPredicted RBP26.77■■□□□ 1.88
COL9A3-203ENST00000462700 TRPM3Q9HCF6 1732 aaPredicted RBP26.76■■□□□ 1.88
COL9A3-203ENST00000462700 EVC2Q86UK5 1308 aa26.76■■□□□ 1.87
COL9A3-203ENST00000462700 C8orf37Q96NL8 207 aa26.76■■□□□ 1.87
COL9A3-203ENST00000462700 POLR3AO14802 1390 aaPredicted RBP26.75■■□□□ 1.87
COL9A3-203ENST00000462700 ARHGEF10O15013 1369 aa26.75■■□□□ 1.87
COL9A3-203ENST00000462700 ZNF772Q68DY9 489 aaPredicted RBP26.75■■□□□ 1.87
COL9A3-203ENST00000462700 SBNO2Q9Y2G9 1366 aa26.74■■□□□ 1.87
COL9A3-203ENST00000462700 AFF2P51816 1311 aa26.74■■□□□ 1.87
COL9A3-203ENST00000462700 PLEKHG3A1L390 1219 aa26.74■■□□□ 1.87
COL9A3-203ENST00000462700 PPIP5K1Q6PFW1 1433 aa26.73■■□□□ 1.87
COL9A3-203ENST00000462700 ACEP12821 1306 aa26.72■■□□□ 1.87
COL9A3-203ENST00000462700 LMOD2Q6P5Q4 547 aa26.72■■□□□ 1.87
COL9A3-203ENST00000462700 ALS2Q96Q42 1657 aa26.7■■□□□ 1.87
COL9A3-203ENST00000462700 NGLY1Q96IV0 654 aa26.69■■□□□ 1.86
COL9A3-203ENST00000462700 SOCS7O14512 581 aa26.68■■□□□ 1.86
COL9A3-203ENST00000462700 PAK3O75914 559 aaPredicted RBP26.67■■□□□ 1.86
COL9A3-203ENST00000462700 CABLES1Q8TDN4 633 aa26.67■■□□□ 1.86
COL9A3-203ENST00000462700 CABP1Q9NZU7 370 aa26.66■■□□□ 1.86
COL9A3-203ENST00000462700 ABCA3Q99758 1704 aa26.65■■□□□ 1.86
COL9A3-203ENST00000462700 MARF1Q9Y4F3 1742 aaKnown RBP26.65■■□□□ 1.86
COL9A3-203ENST00000462700 ATAD2Q6PL18 1390 aa26.64■■□□□ 1.86
COL9A3-203ENST00000462700 PLEKHG5O94827 1062 aa26.64■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms