RNA–Protein interactions for RNA: ENST00000462306.5

ERCC3-206, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, humanhuman

TSL 1 (best)

Gene ERCC3, Length 963 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3-206ENST00000462306 TRAK1Q9UPV9 953 aa22.86■■□□□ 1.25
ERCC3-206ENST00000462306 CDC42BPGQ6DT37 1551 aa22.85■■□□□ 1.25
ERCC3-206ENST00000462306 NBPF1Q3BBV0 1214 aa22.84■■□□□ 1.25
ERCC3-206ENST00000462306 C1orf167Q5SNV9 1468 aa22.84■■□□□ 1.25
ERCC3-206ENST00000462306 SAFB2Q14151 953 aaKnown RBP eCLIP22.81■■□□□ 1.24
ERCC3-206ENST00000462306 POGKQ9P215 609 aa22.81■■□□□ 1.24
ERCC3-206ENST00000462306 AHDC1Q5TGY3 1603 aaPredicted RBP22.8■■□□□ 1.24
ERCC3-206ENST00000462306 TONSLQ96HA7 1378 aa22.79■■□□□ 1.24
ERCC3-206ENST00000462306 PHLPP1O60346 1717 aa22.79■■□□□ 1.24
ERCC3-206ENST00000462306 ARHGEF28Q8N1W1 1705 aaKnown RBP22.77■■□□□ 1.24
ERCC3-206ENST00000462306 NBPF8Q3BBV2 869 aa22.77■■□□□ 1.24
ERCC3-206ENST00000462306 ORAI2Q96SN7 254 aa22.77■■□□□ 1.24
ERCC3-206ENST00000462306 COL16A1Q07092 1604 aaPredicted RBP22.77■■□□□ 1.24
ERCC3-206ENST00000462306 TRPM1Q7Z4N2 1603 aa22.77■■□□□ 1.24
ERCC3-206ENST00000462306 FMN2Q9NZ56 1722 aa22.76■■□□□ 1.23
ERCC3-206ENST00000462306 ADGRB2O60241 1585 aa22.74■■□□□ 1.23
ERCC3-206ENST00000462306 CLSPNQ9HAW4 1339 aa22.74■■□□□ 1.23
ERCC3-206ENST00000462306 NHSL1Q5SYE7 1610 aa22.74■■□□□ 1.23
ERCC3-206ENST00000462306 NUTM2FA1L443 756 aa22.73■■□□□ 1.23
ERCC3-206ENST00000462306 DDX17Q92841 729 aaKnown RBP22.72■■□□□ 1.23
ERCC3-206ENST00000462306 MINK1Q8N4C8 1332 aaPredicted RBP22.72■■□□□ 1.23
ERCC3-206ENST00000462306 ESCO1Q5FWF5 840 aa22.71■■□□□ 1.23
ERCC3-206ENST00000462306 HIRIP3Q9BW71 556 aaPredicted RBP22.71■■□□□ 1.23
ERCC3-206ENST00000462306 ROCK2O75116 1388 aaKnown RBP22.69■■□□□ 1.22
ERCC3-206ENST00000462306 JCADQ9P266 1359 aa22.69■■□□□ 1.22
ERCC3-206ENST00000462306 GPRASP1Q5JY77 1395 aa22.68■■□□□ 1.22
ERCC3-206ENST00000462306 MED1Q15648 1581 aaPredicted RBP22.67■■□□□ 1.22
ERCC3-206ENST00000462306 WASLO00401 505 aaPredicted RBP22.67■■□□□ 1.22
ERCC3-206ENST00000462306 ANKARQ7Z5J8 1434 aa22.65■■□□□ 1.22
ERCC3-206ENST00000462306 USP32Q8NFA0 1604 aa22.65■■□□□ 1.22
ERCC3-206ENST00000462306 SOS2Q07890 1332 aaPredicted RBP22.65■■□□□ 1.22
ERCC3-206ENST00000462306 CENPJQ9HC77 1338 aaPredicted RBP22.64■■□□□ 1.22
ERCC3-206ENST00000462306 RGPD8O14715 1765 aaPredicted RBP22.64■■□□□ 1.22
ERCC3-206ENST00000462306 RALGAPBQ86X10 1494 aa22.64■■□□□ 1.21
ERCC3-206ENST00000462306 DISP3Q9P2K9 1392 aa22.63■■□□□ 1.21
ERCC3-206ENST00000462306 PRR36Q9H6K5 1346 aa22.63■■□□□ 1.21
ERCC3-206ENST00000462306 FOXO3O43524 673 aa22.63■■□□□ 1.21
ERCC3-206ENST00000462306 CCER1Q8TC90 406 aaPredicted RBP22.63■■□□□ 1.21
ERCC3-206ENST00000462306 LRRC59Q96AG4 307 aaKnown RBP22.63■■□□□ 1.21
ERCC3-206ENST00000462306 TULP4Q9NRJ4 1543 aa22.62■■□□□ 1.21
ERCC3-206ENST00000462306 NPHP3Q7Z494 1330 aa22.62■■□□□ 1.21
ERCC3-206ENST00000462306 TIMELESSQ9UNS1 1208 aa22.62■■□□□ 1.21
ERCC3-206ENST00000462306 EIF3AQ14152 1382 aaKnown RBP22.62■■□□□ 1.21
ERCC3-206ENST00000462306 KIF1AQ12756 1690 aa22.62■■□□□ 1.21
ERCC3-206ENST00000462306 SHPRHQ149N8 1683 aa22.62■■□□□ 1.21
ERCC3-206ENST00000462306 PXDNQ92626 1479 aa22.61■■□□□ 1.21
ERCC3-206ENST00000462306 PHF8Q9UPP1 1060 aa22.61■■□□□ 1.21
ERCC3-206ENST00000462306 CDK19Q9BWU1 502 aa22.59■■□□□ 1.21
ERCC3-206ENST00000462306 CARD11Q9BXL7 1154 aa22.59■■□□□ 1.21
ERCC3-206ENST00000462306 QRICH2Q9H0J4 1663 aa22.58■■□□□ 1.21
ERCC3-206ENST00000462306 SPATA31A6Q5VVP1 1343 aa22.58■■□□□ 1.21
ERCC3-206ENST00000462306 PNPLA6Q8IY17 1366 aa22.58■■□□□ 1.21
ERCC3-206ENST00000462306 XPCQ01831 940 aaPredicted RBP22.57■■□□□ 1.2
ERCC3-206ENST00000462306 ATP7BP35670 1465 aa22.57■■□□□ 1.2
ERCC3-206ENST00000462306 NUDT16Q96DE0 195 aaKnown RBP22.56■■□□□ 1.2
ERCC3-206ENST00000462306 PMFBP1Q8TBY8 1022 aa22.55■■□□□ 1.2
ERCC3-206ENST00000462306 LRP6O75581 1613 aa22.55■■□□□ 1.2
ERCC3-206ENST00000462306 KRT28Q7Z3Y7 464 aa22.53■■□□□ 1.2
ERCC3-206ENST00000462306 SPATA31A3Q5VYP0 1347 aa22.5■■□□□ 1.19
ERCC3-206ENST00000462306 TOPAZ1Q8N9V7 1692 aa22.49■■□□□ 1.19
ERCC3-206ENST00000462306 ITSN1Q15811 1721 aa22.49■■□□□ 1.19
ERCC3-206ENST00000462306 NUTM2BA6NNL0 878 aaPredicted RBP22.49■■□□□ 1.19
ERCC3-206ENST00000462306 NUTM2EB1AL46 878 aaPredicted RBP22.49■■□□□ 1.19
ERCC3-206ENST00000462306 SRPK2P78362 688 aaKnown RBP22.49■■□□□ 1.19
ERCC3-206ENST00000462306 PSME1Q06323 249 aa22.49■■□□□ 1.19
ERCC3-206ENST00000462306 NUTM2AQ8IVF1 878 aaPredicted RBP22.49■■□□□ 1.19
ERCC3-206ENST00000462306 PHF23Q9BUL5 403 aaPredicted RBP22.49■■□□□ 1.19
ERCC3-206ENST00000462306 CABP2Q9NPB3 220 aa22.49■■□□□ 1.19
ERCC3-206ENST00000462306 CCDC61Q9Y6R9 512 aa22.49■■□□□ 1.19
ERCC3-206ENST00000462306 SBNO2Q9Y2G9 1366 aa22.49■■□□□ 1.19
ERCC3-206ENST00000462306 RGS17Q9UGC6 210 aaPredicted RBP22.48■■□□□ 1.19
ERCC3-206ENST00000462306 COL22A1Q8NFW1 1626 aaPredicted RBP22.48■■□□□ 1.19
ERCC3-206ENST00000462306 EVC2Q86UK5 1308 aa22.48■■□□□ 1.19
ERCC3-206ENST00000462306 SBNO1A3KN83 1393 aa22.47■■□□□ 1.19
ERCC3-206ENST00000462306 PLEKHG3A1L390 1219 aa22.46■■□□□ 1.19
ERCC3-206ENST00000462306 NGDNQ8NEJ9 315 aaKnown RBP22.46■■□□□ 1.19
ERCC3-206ENST00000462306 POLR3AO14802 1390 aaPredicted RBP22.45■■□□□ 1.18
ERCC3-206ENST00000462306 TNS3Q68CZ2 1445 aa22.45■■□□□ 1.18
ERCC3-206ENST00000462306 TRPM3Q9HCF6 1732 aaPredicted RBP22.43■■□□□ 1.18
ERCC3-206ENST00000462306 ACEP12821 1306 aa22.43■■□□□ 1.18
ERCC3-206ENST00000462306 MEX3CQ5U5Q3 659 aaKnown RBP22.43■■□□□ 1.18
ERCC3-206ENST00000462306 ILDR2Q71H61 639 aa22.43■■□□□ 1.18
ERCC3-206ENST00000462306 PPIP5K1Q6PFW1 1433 aa22.42■■□□□ 1.18
ERCC3-206ENST00000462306 ST20-MTHFSA0A0A6YYL1 179 aa22.41■■□□□ 1.18
ERCC3-206ENST00000462306 TESK2Q96S53 571 aa22.41■■□□□ 1.18
ERCC3-206ENST00000462306 USP47Q96K76 1375 aa22.39■■□□□ 1.18
ERCC3-206ENST00000462306 CABP1Q9NZU7 370 aa22.39■■□□□ 1.17
ERCC3-206ENST00000462306 ARHGEF10O15013 1369 aa22.38■■□□□ 1.17
ERCC3-206ENST00000462306 ADAMTS2O95450 1211 aa22.38■■□□□ 1.17
ERCC3-206ENST00000462306 ALS2Q96Q42 1657 aa22.38■■□□□ 1.17
ERCC3-206ENST00000462306 LMOD2Q6P5Q4 547 aa22.37■■□□□ 1.17
ERCC3-206ENST00000462306 POTEAQ6S8J7 498 aa22.36■■□□□ 1.17
ERCC3-206ENST00000462306 ATAD2Q6PL18 1390 aa22.36■■□□□ 1.17
ERCC3-206ENST00000462306 C8orf37Q96NL8 207 aa22.35■■□□□ 1.17
ERCC3-206ENST00000462306 PAK3O75914 559 aaPredicted RBP22.34■■□□□ 1.17
ERCC3-206ENST00000462306 CABLES1Q8TDN4 633 aa22.34■■□□□ 1.17
ERCC3-206ENST00000462306 AFF2P51816 1311 aa22.33■■□□□ 1.17
ERCC3-206ENST00000462306 PUS7Q96PZ0 661 aaKnown RBP22.33■■□□□ 1.17
ERCC3-206ENST00000462306 ZNF772Q68DY9 489 aaPredicted RBP22.32■■□□□ 1.16
ERCC3-206ENST00000462306 SLC24A1O60721 1099 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms