RNA–Protein interactions for RNA: ENST00000461874.1

VARS-220, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-220ENST00000461874 YTHDC2Q9H6S0 1430 aaKnown RBP27.85■■■□□ 2.05
VARS-220ENST00000461874 CFAP70Q5T0N1 1121 aa27.85■■■□□ 2.05
VARS-220ENST00000461874 MEX3CQ5U5Q3 659 aaKnown RBP27.85■■■□□ 2.05
VARS-220ENST00000461874 SIRT1Q96EB6 747 aa27.83■■■□□ 2.05
VARS-220ENST00000461874 PLEKHH1Q9ULM0 1364 aa27.83■■■□□ 2.05
VARS-220ENST00000461874 NUTM2BA6NNL0 878 aaPredicted RBP27.82■■■□□ 2.04
VARS-220ENST00000461874 NUTM2EB1AL46 878 aaPredicted RBP27.82■■■□□ 2.04
VARS-220ENST00000461874 NUTM2AQ8IVF1 878 aaPredicted RBP27.82■■■□□ 2.04
VARS-220ENST00000461874 CDC42BPGQ6DT37 1551 aa27.82■■■□□ 2.04
VARS-220ENST00000461874 SOS2Q07890 1332 aaPredicted RBP27.8■■■□□ 2.04
VARS-220ENST00000461874 DHX57Q6P158 1386 aaKnown RBP27.79■■■□□ 2.04
VARS-220ENST00000461874 PNPLA6Q8IY17 1366 aa27.79■■■□□ 2.04
VARS-220ENST00000461874 KNDC1Q76NI1 1749 aa27.78■■■□□ 2.04
VARS-220ENST00000461874 ESCO1Q5FWF5 840 aa27.78■■■□□ 2.04
VARS-220ENST00000461874 LAMC1P11047 1609 aa27.78■■■□□ 2.04
VARS-220ENST00000461874 ZNF772Q68DY9 489 aaPredicted RBP27.77■■■□□ 2.04
VARS-220ENST00000461874 DCAF11Q8TEB1 546 aa27.75■■■□□ 2.03
VARS-220ENST00000461874 KDM2AQ9Y2K7 1162 aa27.74■■■□□ 2.03
VARS-220ENST00000461874 NUTM2FA1L443 756 aa27.73■■■□□ 2.03
VARS-220ENST00000461874 STAC3Q96MF2 364 aa27.73■■■□□ 2.03
VARS-220ENST00000461874 NPHP3Q7Z494 1330 aa27.71■■■□□ 2.03
VARS-220ENST00000461874 PRAM1Q96QH2 718 aa27.7■■■□□ 2.02
VARS-220ENST00000461874 FOXO3O43524 673 aa27.69■■■□□ 2.02
VARS-220ENST00000461874 AFF2P51816 1311 aa27.67■■■□□ 2.02
VARS-220ENST00000461874 ADGRB1O14514 1584 aa27.67■■■□□ 2.02
VARS-220ENST00000461874 SAFB2Q14151 953 aaKnown RBP eCLIP27.66■■■□□ 2.02
VARS-220ENST00000461874 DLC1Q96QB1 1528 aa27.66■■■□□ 2.02
VARS-220ENST00000461874 C8orf37Q96NL8 207 aa27.65■■■□□ 2.02
VARS-220ENST00000461874 POGKQ9P215 609 aa27.65■■■□□ 2.02
VARS-220ENST00000461874 PXDNQ92626 1479 aa27.64■■■□□ 2.02
VARS-220ENST00000461874 XPCQ01831 940 aaPredicted RBP27.64■■■□□ 2.02
VARS-220ENST00000461874 FMN2Q9NZ56 1722 aa27.64■■■□□ 2.01
VARS-220ENST00000461874 ADAMTS2O95450 1211 aa27.63■■■□□ 2.01
VARS-220ENST00000461874 TRAK1Q9UPV9 953 aa27.63■■■□□ 2.01
VARS-220ENST00000461874 RXRBP28702 533 aa27.61■■■□□ 2.01
VARS-220ENST00000461874 NGLY1Q96IV0 654 aa27.59■■■□□ 2.01
VARS-220ENST00000461874 PHF8Q9UPP1 1060 aa27.58■■■□□ 2.01
VARS-220ENST00000461874 COL22A1Q8NFW1 1626 aaPredicted RBP27.56■■■□□ 2
VARS-220ENST00000461874 KRT28Q7Z3Y7 464 aa27.55■■■□□ 2
VARS-220ENST00000461874 QTRT2Q9H974 415 aaKnown RBP27.55■■■□□ 2
VARS-220ENST00000461874 KIF1AQ12756 1690 aa27.54■■■□□ 2
VARS-220ENST00000461874 SPATA31A3Q5VYP0 1347 aa27.53■■■□□ 2
VARS-220ENST00000461874 HIRIP3Q9BW71 556 aaPredicted RBP27.53■■■□□ 2
VARS-220ENST00000461874 ANKARQ7Z5J8 1434 aa27.52■■■□□ 2
VARS-220ENST00000461874 MINK1Q8N4C8 1332 aaPredicted RBP27.52■■■□□ 2
VARS-220ENST00000461874 FNBP4Q8N3X1 1017 aaPredicted RBP27.51■■□□□ 1.99
VARS-220ENST00000461874 ADGRB2O60241 1585 aa27.51■■□□□ 1.99
VARS-220ENST00000461874 CDK12Q9NYV4 1490 aaPredicted RBP27.51■■□□□ 1.99
VARS-220ENST00000461874 RBM6P78332 1123 aaKnown RBP27.5■■□□□ 1.99
VARS-220ENST00000461874 PSME1Q06323 249 aa27.49■■□□□ 1.99
VARS-220ENST00000461874 USP21Q9UK80 565 aa27.49■■□□□ 1.99
VARS-220ENST00000461874 RGPD8O14715 1765 aaPredicted RBP27.48■■□□□ 1.99
VARS-220ENST00000461874 WASLO00401 505 aaPredicted RBP27.47■■□□□ 1.99
VARS-220ENST00000461874 PMFBP1Q8TBY8 1022 aa27.46■■□□□ 1.99
VARS-220ENST00000461874 EIF3AQ14152 1382 aaKnown RBP27.46■■□□□ 1.99
VARS-220ENST00000461874 SBNO1A3KN83 1393 aa27.45■■□□□ 1.98
VARS-220ENST00000461874 USP32Q8NFA0 1604 aa27.45■■□□□ 1.98
VARS-220ENST00000461874 PRR36Q9H6K5 1346 aa27.44■■□□□ 1.98
VARS-220ENST00000461874 TRPC5Q9UL62 973 aaPredicted RBP27.44■■□□□ 1.98
VARS-220ENST00000461874 TNS3Q68CZ2 1445 aa27.43■■□□□ 1.98
VARS-220ENST00000461874 NBPF1Q3BBV0 1214 aa27.42■■□□□ 1.98
VARS-220ENST00000461874 TULP4Q9NRJ4 1543 aa27.41■■□□□ 1.98
VARS-220ENST00000461874 RGS12O14924 1447 aa27.4■■□□□ 1.98
VARS-220ENST00000461874 KIAA1210Q9ULL0 1709 aa27.39■■□□□ 1.98
VARS-220ENST00000461874 UPF1Q92900 1129 aaKnown RBP eCLIP27.39■■□□□ 1.98
VARS-220ENST00000461874 ATRNO75882 1429 aa27.39■■□□□ 1.97
VARS-220ENST00000461874 ARHGEF28Q8N1W1 1705 aaKnown RBP27.38■■□□□ 1.97
VARS-220ENST00000461874 BCL9LQ86UU0 1499 aa27.38■■□□□ 1.97
VARS-220ENST00000461874 L3MBTL2Q969R5 705 aa27.38■■□□□ 1.97
VARS-220ENST00000461874 ARHGEF10O15013 1369 aa27.37■■□□□ 1.97
VARS-220ENST00000461874 LMOD2Q6P5Q4 547 aa27.37■■□□□ 1.97
VARS-220ENST00000461874 SIN3AQ96ST3 1273 aa27.37■■□□□ 1.97
VARS-220ENST00000461874 CABLES1Q8TDN4 633 aa27.36■■□□□ 1.97
VARS-220ENST00000461874 GPRASP1Q5JY77 1395 aa27.35■■□□□ 1.97
VARS-220ENST00000461874 NUDT16Q96DE0 195 aaKnown RBP27.35■■□□□ 1.97
VARS-220ENST00000461874 HAP1P54257 671 aaPredicted RBP27.34■■□□□ 1.97
VARS-220ENST00000461874 CDK19Q9BWU1 502 aa27.34■■□□□ 1.97
VARS-220ENST00000461874 MARF1Q9Y4F3 1742 aaKnown RBP27.33■■□□□ 1.97
VARS-220ENST00000461874 NGDNQ8NEJ9 315 aaKnown RBP27.33■■□□□ 1.97
VARS-220ENST00000461874 PLEKHG5O94827 1062 aa27.32■■□□□ 1.96
VARS-220ENST00000461874 UNC5CLQ8IV45 518 aa27.32■■□□□ 1.96
VARS-220ENST00000461874 SLIT2O94813 1529 aa27.31■■□□□ 1.96
VARS-220ENST00000461874 NEUROD1Q13562 356 aa27.31■■□□□ 1.96
VARS-220ENST00000461874 ATP7BP35670 1465 aa27.31■■□□□ 1.96
VARS-220ENST00000461874 GJD4Q96KN9 370 aaPredicted RBP27.29■■□□□ 1.96
VARS-220ENST00000461874 TRPM3Q9HCF6 1732 aaPredicted RBP27.27■■□□□ 1.96
VARS-220ENST00000461874 CENPJQ9HC77 1338 aaPredicted RBP27.26■■□□□ 1.95
VARS-220ENST00000461874 CCDC61Q9Y6R9 512 aa27.26■■□□□ 1.95
VARS-220ENST00000461874 PAK3O75914 559 aaPredicted RBP27.24■■□□□ 1.95
VARS-220ENST00000461874 FAM83GA6ND36 823 aa27.23■■□□□ 1.95
VARS-220ENST00000461874 PLEKHG3A1L390 1219 aa27.22■■□□□ 1.95
VARS-220ENST00000461874 POLR3AO14802 1390 aaPredicted RBP27.22■■□□□ 1.95
VARS-220ENST00000461874 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.21■■□□□ 1.95
VARS-220ENST00000461874 ALS2Q96Q42 1657 aa27.21■■□□□ 1.95
VARS-220ENST00000461874 ITSN1Q15811 1721 aa27.21■■□□□ 1.95
VARS-220ENST00000461874 ACEP12821 1306 aa27.2■■□□□ 1.95
VARS-220ENST00000461874 RALGAPBQ86X10 1494 aa27.2■■□□□ 1.95
VARS-220ENST00000461874 NBPF8Q3BBV2 869 aa27.2■■□□□ 1.94
VARS-220ENST00000461874 ABCA3Q99758 1704 aa27.2■■□□□ 1.94
VARS-220ENST00000461874 ATAD2Q6PL18 1390 aa27.2■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms