RNA–Protein interactions for RNA: ENST00000460573.5

C9orf3-209, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-209ENST00000460573 KNDC1Q76NI1 1749 aa32.08■■■□□ 2.73
C9orf3-209ENST00000460573 ROBO2Q9HCK4 1378 aa32.06■■■□□ 2.72
C9orf3-209ENST00000460573 TRPM1Q7Z4N2 1603 aa32.05■■■□□ 2.72
C9orf3-209ENST00000460573 NBPF1Q3BBV0 1214 aa32.05■■■□□ 2.72
C9orf3-209ENST00000460573 DLC1Q96QB1 1528 aa32.03■■■□□ 2.72
C9orf3-209ENST00000460573 DCCP43146 1447 aa32.02■■■□□ 2.72
C9orf3-209ENST00000460573 ROCK2O75116 1388 aaKnown RBP32.01■■■□□ 2.71
C9orf3-209ENST00000460573 JCADQ9P266 1359 aa32.01■■■□□ 2.71
C9orf3-209ENST00000460573 TRAK1Q9UPV9 953 aa32■■■□□ 2.71
C9orf3-209ENST00000460573 RALGAPBQ86X10 1494 aa31.97■■■□□ 2.71
C9orf3-209ENST00000460573 GPRASP1Q5JY77 1395 aa31.97■■■□□ 2.71
C9orf3-209ENST00000460573 ADGRL3Q9HAR2 1447 aa31.96■■■□□ 2.71
C9orf3-209ENST00000460573 WAPLQ7Z5K2 1190 aa31.95■■■□□ 2.71
C9orf3-209ENST00000460573 COL16A1Q07092 1604 aaPredicted RBP31.95■■■□□ 2.71
C9orf3-209ENST00000460573 POGKQ9P215 609 aa31.94■■■□□ 2.7
C9orf3-209ENST00000460573 NALCNQ8IZF0 1738 aa31.94■■■□□ 2.7
C9orf3-209ENST00000460573 BRINP3Q76B58 766 aa31.93■■■□□ 2.7
C9orf3-209ENST00000460573 PRAM1Q96QH2 718 aa31.93■■■□□ 2.7
C9orf3-209ENST00000460573 AHDC1Q5TGY3 1603 aaPredicted RBP31.93■■■□□ 2.7
C9orf3-209ENST00000460573 MEX3CQ5U5Q3 659 aaKnown RBP31.92■■■□□ 2.7
C9orf3-209ENST00000460573 PLEKHH1Q9ULM0 1364 aa31.91■■■□□ 2.7
C9orf3-209ENST00000460573 CARD11Q9BXL7 1154 aa31.9■■■□□ 2.7
C9orf3-209ENST00000460573 MST1RQ04912 1400 aa31.89■■■□□ 2.7
C9orf3-209ENST00000460573 ARHGEF28Q8N1W1 1705 aaKnown RBP31.88■■■□□ 2.69
C9orf3-209ENST00000460573 EIF3AQ14152 1382 aaKnown RBP31.85■■■□□ 2.69
C9orf3-209ENST00000460573 SPATA31A6Q5VVP1 1343 aa31.85■■■□□ 2.69
C9orf3-209ENST00000460573 SHPRHQ149N8 1683 aa31.83■■■□□ 2.69
C9orf3-209ENST00000460573 SAFB2Q14151 953 aaKnown RBP eCLIP31.82■■■□□ 2.68
C9orf3-209ENST00000460573 RGS17Q9UGC6 210 aaPredicted RBP31.82■■■□□ 2.68
C9orf3-209ENST00000460573 CENPJQ9HC77 1338 aaPredicted RBP31.81■■■□□ 2.68
C9orf3-209ENST00000460573 CDC42BPGQ6DT37 1551 aa31.8■■■□□ 2.68
C9orf3-209ENST00000460573 NHSL1Q5SYE7 1610 aa31.79■■■□□ 2.68
C9orf3-209ENST00000460573 NUTM2BA6NNL0 878 aaPredicted RBP31.78■■■□□ 2.68
C9orf3-209ENST00000460573 NUTM2EB1AL46 878 aaPredicted RBP31.78■■■□□ 2.68
C9orf3-209ENST00000460573 NUTM2AQ8IVF1 878 aaPredicted RBP31.78■■■□□ 2.68
C9orf3-209ENST00000460573 LRRC59Q96AG4 307 aaKnown RBP31.76■■■□□ 2.67
C9orf3-209ENST00000460573 C1orf167Q5SNV9 1468 aa31.76■■■□□ 2.67
C9orf3-209ENST00000460573 ADGRB2O60241 1585 aa31.76■■■□□ 2.67
C9orf3-209ENST00000460573 MINK1Q8N4C8 1332 aaPredicted RBP31.75■■■□□ 2.67
C9orf3-209ENST00000460573 POTEAQ6S8J7 498 aa31.72■■■□□ 2.67
C9orf3-209ENST00000460573 DDX17Q92841 729 aaKnown RBP31.72■■■□□ 2.67
C9orf3-209ENST00000460573 LRP6O75581 1613 aa31.71■■■□□ 2.67
C9orf3-209ENST00000460573 HIRIP3Q9BW71 556 aaPredicted RBP31.7■■■□□ 2.67
C9orf3-209ENST00000460573 WASLO00401 505 aaPredicted RBP31.69■■■□□ 2.66
C9orf3-209ENST00000460573 QRICH2Q9H0J4 1663 aa31.68■■■□□ 2.66
C9orf3-209ENST00000460573 ZNF772Q68DY9 489 aaPredicted RBP31.68■■■□□ 2.66
C9orf3-209ENST00000460573 SBNO2Q9Y2G9 1366 aa31.68■■■□□ 2.66
C9orf3-209ENST00000460573 ORAI2Q96SN7 254 aa31.67■■■□□ 2.66
C9orf3-209ENST00000460573 FMN2Q9NZ56 1722 aa31.66■■■□□ 2.66
C9orf3-209ENST00000460573 SLC24A1O60721 1099 aa31.66■■■□□ 2.66
C9orf3-209ENST00000460573 USP47Q96K76 1375 aa31.66■■■□□ 2.66
C9orf3-209ENST00000460573 ESCO1Q5FWF5 840 aa31.65■■■□□ 2.66
C9orf3-209ENST00000460573 ST20-MTHFSA0A0A6YYL1 179 aa31.62■■■□□ 2.65
C9orf3-209ENST00000460573 NUTM2FA1L443 756 aa31.62■■■□□ 2.65
C9orf3-209ENST00000460573 ANKARQ7Z5J8 1434 aa31.62■■■□□ 2.65
C9orf3-209ENST00000460573 EVC2Q86UK5 1308 aa31.61■■■□□ 2.65
C9orf3-209ENST00000460573 CDK19Q9BWU1 502 aa31.61■■■□□ 2.65
C9orf3-209ENST00000460573 TULP4Q9NRJ4 1543 aa31.59■■■□□ 2.65
C9orf3-209ENST00000460573 PNPLA6Q8IY17 1366 aa31.59■■■□□ 2.65
C9orf3-209ENST00000460573 NPHP3Q7Z494 1330 aa31.57■■■□□ 2.64
C9orf3-209ENST00000460573 EIF4G2P78344 907 aaKnown RBP eCLIP31.57■■■□□ 2.64
C9orf3-209ENST00000460573 ZEB1P37275 1124 aaPredicted RBP31.56■■■□□ 2.64
C9orf3-209ENST00000460573 C8orf37Q96NL8 207 aa31.56■■■□□ 2.64
C9orf3-209ENST00000460573 SRPK2P78362 688 aaKnown RBP31.55■■■□□ 2.64
C9orf3-209ENST00000460573 SOS2Q07890 1332 aaPredicted RBP31.54■■■□□ 2.64
C9orf3-209ENST00000460573 TESK2Q96S53 571 aa31.54■■■□□ 2.64
C9orf3-209ENST00000460573 AFF2P51816 1311 aa31.53■■■□□ 2.64
C9orf3-209ENST00000460573 NUDT16Q96DE0 195 aaKnown RBP31.53■■■□□ 2.64
C9orf3-209ENST00000460573 ADAMTS2O95450 1211 aa31.52■■■□□ 2.64
C9orf3-209ENST00000460573 USP32Q8NFA0 1604 aa31.52■■■□□ 2.64
C9orf3-209ENST00000460573 PRR36Q9H6K5 1346 aa31.51■■■□□ 2.64
C9orf3-209ENST00000460573 FOXO3O43524 673 aa31.5■■■□□ 2.63
C9orf3-209ENST00000460573 ATP7BP35670 1465 aa31.5■■■□□ 2.63
C9orf3-209ENST00000460573 RXRBP28702 533 aa31.49■■■□□ 2.63
C9orf3-209ENST00000460573 PUS7Q96PZ0 661 aaKnown RBP31.49■■■□□ 2.63
C9orf3-209ENST00000460573 CABP2Q9NPB3 220 aa31.49■■■□□ 2.63
C9orf3-209ENST00000460573 PHF8Q9UPP1 1060 aa31.49■■■□□ 2.63
C9orf3-209ENST00000460573 CCDC61Q9Y6R9 512 aa31.49■■■□□ 2.63
C9orf3-209ENST00000460573 KIF1AQ12756 1690 aa31.48■■■□□ 2.63
C9orf3-209ENST00000460573 XPCQ01831 940 aaPredicted RBP31.48■■■□□ 2.63
C9orf3-209ENST00000460573 NGLY1Q96IV0 654 aa31.48■■■□□ 2.63
C9orf3-209ENST00000460573 RGPD8O14715 1765 aaPredicted RBP31.47■■■□□ 2.63
C9orf3-209ENST00000460573 HSPA5P11021 654 aaKnown RBP31.46■■■□□ 2.63
C9orf3-209ENST00000460573 TMF1P82094 1093 aa31.46■■■□□ 2.63
C9orf3-209ENST00000460573 ITSN1Q15811 1721 aa31.46■■■□□ 2.63
C9orf3-209ENST00000460573 ATAD2Q6PL18 1390 aa31.44■■■□□ 2.62
C9orf3-209ENST00000460573 CDCA8Q53HL2 280 aa31.42■■■□□ 2.62
C9orf3-209ENST00000460573 PLEKHG3A1L390 1219 aa31.41■■■□□ 2.62
C9orf3-209ENST00000460573 TOPAZ1Q8N9V7 1692 aa31.41■■■□□ 2.62
C9orf3-209ENST00000460573 PMFBP1Q8TBY8 1022 aa31.4■■■□□ 2.62
C9orf3-209ENST00000460573 PXDNQ92626 1479 aa31.4■■■□□ 2.62
C9orf3-209ENST00000460573 COL22A1Q8NFW1 1626 aaPredicted RBP31.38■■■□□ 2.61
C9orf3-209ENST00000460573 QTRT2Q9H974 415 aaKnown RBP31.38■■■□□ 2.61
C9orf3-209ENST00000460573 PPIP5K1Q6PFW1 1433 aa31.38■■■□□ 2.61
C9orf3-209ENST00000460573 NGDNQ8NEJ9 315 aaKnown RBP31.37■■■□□ 2.61
C9orf3-209ENST00000460573 HAP1P54257 671 aaPredicted RBP31.35■■■□□ 2.61
C9orf3-209ENST00000460573 PSME1Q06323 249 aa31.35■■■□□ 2.61
C9orf3-209ENST00000460573 POLR3AO14802 1390 aaPredicted RBP31.34■■■□□ 2.61
C9orf3-209ENST00000460573 KRT28Q7Z3Y7 464 aa31.34■■■□□ 2.61
C9orf3-209ENST00000460573 CABP1Q9NZU7 370 aa31.34■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms