RNA–Protein interactions for RNA: ENST00000459860.1

SSNA1-202, Transcript of SS nuclear autoantigen 1, humanhuman

TSL 1 (best)

Gene SSNA1, Length 1,170 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSNA1-202ENST00000459860 ROBO2Q9HCK4 1378 aa31.38■■■□□ 2.61
SSNA1-202ENST00000459860 TECPR2O15040 1411 aa31.38■■■□□ 2.61
SSNA1-202ENST00000459860 KIAA1210Q9ULL0 1709 aa31.37■■■□□ 2.61
SSNA1-202ENST00000459860 ADGRL3Q9HAR2 1447 aa31.36■■■□□ 2.61
SSNA1-202ENST00000459860 ABCC11Q96J66 1382 aa31.35■■■□□ 2.61
SSNA1-202ENST00000459860 MST1RQ04912 1400 aa31.34■■■□□ 2.61
SSNA1-202ENST00000459860 L3MBTL2Q969R5 705 aa31.33■■■□□ 2.61
SSNA1-202ENST00000459860 ADGRB1O14514 1584 aa31.33■■■□□ 2.61
SSNA1-202ENST00000459860 TONSLQ96HA7 1378 aa31.3■■■□□ 2.6
SSNA1-202ENST00000459860 DLC1Q96QB1 1528 aa31.27■■■□□ 2.6
SSNA1-202ENST00000459860 MEX3CQ5U5Q3 659 aaKnown RBP31.26■■■□□ 2.59
SSNA1-202ENST00000459860 SHPRHQ149N8 1683 aa31.25■■■□□ 2.59
SSNA1-202ENST00000459860 ZNF772Q68DY9 489 aaPredicted RBP31.24■■■□□ 2.59
SSNA1-202ENST00000459860 SIRT1Q96EB6 747 aa31.23■■■□□ 2.59
SSNA1-202ENST00000459860 CDC42BPGQ6DT37 1551 aa31.22■■■□□ 2.59
SSNA1-202ENST00000459860 WAPLQ7Z5K2 1190 aa31.22■■■□□ 2.59
SSNA1-202ENST00000459860 CLSPNQ9HAW4 1339 aa31.2■■■□□ 2.58
SSNA1-202ENST00000459860 TRPM1Q7Z4N2 1603 aa31.2■■■□□ 2.58
SSNA1-202ENST00000459860 ARHGEF28Q8N1W1 1705 aaKnown RBP31.19■■■□□ 2.58
SSNA1-202ENST00000459860 DDX17Q92841 729 aaKnown RBP31.19■■■□□ 2.58
SSNA1-202ENST00000459860 TRAK1Q9UPV9 953 aa31.19■■■□□ 2.58
SSNA1-202ENST00000459860 PLEKHH1Q9ULM0 1364 aa31.18■■■□□ 2.58
SSNA1-202ENST00000459860 NUTM2BA6NNL0 878 aaPredicted RBP31.18■■■□□ 2.58
SSNA1-202ENST00000459860 NUTM2EB1AL46 878 aaPredicted RBP31.18■■■□□ 2.58
SSNA1-202ENST00000459860 NUTM2AQ8IVF1 878 aaPredicted RBP31.18■■■□□ 2.58
SSNA1-202ENST00000459860 POGKQ9P215 609 aa31.18■■■□□ 2.58
SSNA1-202ENST00000459860 LRRC59Q96AG4 307 aaKnown RBP31.17■■■□□ 2.58
SSNA1-202ENST00000459860 PRAM1Q96QH2 718 aa31.17■■■□□ 2.58
SSNA1-202ENST00000459860 NHSL1Q5SYE7 1610 aa31.16■■■□□ 2.58
SSNA1-202ENST00000459860 C1orf167Q5SNV9 1468 aa31.14■■■□□ 2.58
SSNA1-202ENST00000459860 PNPLA6Q8IY17 1366 aa31.13■■■□□ 2.57
SSNA1-202ENST00000459860 CCER1Q8TC90 406 aaPredicted RBP31.12■■■□□ 2.57
SSNA1-202ENST00000459860 SAFB2Q14151 953 aaKnown RBP eCLIP31.11■■■□□ 2.57
SSNA1-202ENST00000459860 FMN2Q9NZ56 1722 aa31.1■■■□□ 2.57
SSNA1-202ENST00000459860 AFF2P51816 1311 aa31.1■■■□□ 2.57
SSNA1-202ENST00000459860 NBPF1Q3BBV0 1214 aa31.1■■■□□ 2.57
SSNA1-202ENST00000459860 RXRBP28702 533 aa31.09■■■□□ 2.57
SSNA1-202ENST00000459860 ADGRB2O60241 1585 aa31.09■■■□□ 2.57
SSNA1-202ENST00000459860 ROCK2O75116 1388 aaKnown RBP31.07■■■□□ 2.56
SSNA1-202ENST00000459860 UPF1Q92900 1129 aaKnown RBP eCLIP31.07■■■□□ 2.562e-6■■□□□ 13.7
SSNA1-202ENST00000459860 ORAI2Q96SN7 254 aa31.07■■■□□ 2.56
SSNA1-202ENST00000459860 SOS2Q07890 1332 aaPredicted RBP31.04■■■□□ 2.56
SSNA1-202ENST00000459860 CDK12Q9NYV4 1490 aaPredicted RBP31.03■■■□□ 2.56
SSNA1-202ENST00000459860 C8orf37Q96NL8 207 aa31.02■■■□□ 2.56
SSNA1-202ENST00000459860 NBPF8Q3BBV2 869 aa31.01■■■□□ 2.55
SSNA1-202ENST00000459860 RALGAPBQ86X10 1494 aa31.01■■■□□ 2.55
SSNA1-202ENST00000459860 MINK1Q8N4C8 1332 aaPredicted RBP31■■■□□ 2.55
SSNA1-202ENST00000459860 TIMELESSQ9UNS1 1208 aa30.99■■■□□ 2.55
SSNA1-202ENST00000459860 QRICH2Q9H0J4 1663 aa30.98■■■□□ 2.55
SSNA1-202ENST00000459860 EIF3AQ14152 1382 aaKnown RBP30.98■■■□□ 2.55
SSNA1-202ENST00000459860 NUTM2FA1L443 756 aa30.98■■■□□ 2.55
SSNA1-202ENST00000459860 HIRIP3Q9BW71 556 aaPredicted RBP30.97■■■□□ 2.55
SSNA1-202ENST00000459860 KIF1AQ12756 1690 aa30.97■■■□□ 2.55
SSNA1-202ENST00000459860 QTRT2Q9H974 415 aaKnown RBP30.96■■■□□ 2.55
SSNA1-202ENST00000459860 RGPD8O14715 1765 aaPredicted RBP30.96■■■□□ 2.55
SSNA1-202ENST00000459860 CENPJQ9HC77 1338 aaPredicted RBP30.96■■■□□ 2.55
SSNA1-202ENST00000459860 GPRASP1Q5JY77 1395 aa30.95■■■□□ 2.55
SSNA1-202ENST00000459860 ESCO1Q5FWF5 840 aa30.95■■■□□ 2.55
SSNA1-202ENST00000459860 ANKARQ7Z5J8 1434 aa30.93■■■□□ 2.54
SSNA1-202ENST00000459860 ADAMTS2O95450 1211 aa30.93■■■□□ 2.54
SSNA1-202ENST00000459860 RBM6P78332 1123 aaKnown RBP30.92■■■□□ 2.54
SSNA1-202ENST00000459860 CARD11Q9BXL7 1154 aa30.92■■■□□ 2.54
SSNA1-202ENST00000459860 TULP4Q9NRJ4 1543 aa30.92■■■□□ 2.54
SSNA1-202ENST00000459860 RGS12O14924 1447 aa30.9■■■□□ 2.54
SSNA1-202ENST00000459860 WASLO00401 505 aaPredicted RBP30.9■■■□□ 2.54
SSNA1-202ENST00000459860 NGLY1Q96IV0 654 aa30.9■■■□□ 2.54
SSNA1-202ENST00000459860 USP32Q8NFA0 1604 aa30.9■■■□□ 2.54
SSNA1-202ENST00000459860 ITSN1Q15811 1721 aa30.9■■■□□ 2.54
SSNA1-202ENST00000459860 NPHP3Q7Z494 1330 aa30.87■■■□□ 2.53
SSNA1-202ENST00000459860 FNBP4Q8N3X1 1017 aaPredicted RBP30.85■■■□□ 2.53
SSNA1-202ENST00000459860 PXDNQ92626 1479 aa30.82■■■□□ 2.53
SSNA1-202ENST00000459860 USP21Q9UK80 565 aa30.82■■■□□ 2.52
SSNA1-202ENST00000459860 PHF8Q9UPP1 1060 aa30.82■■■□□ 2.52
SSNA1-202ENST00000459860 FOXO3O43524 673 aa30.8■■■□□ 2.52
SSNA1-202ENST00000459860 CDK19Q9BWU1 502 aa30.8■■■□□ 2.52
SSNA1-202ENST00000459860 ATP7BP35670 1465 aa30.79■■■□□ 2.52
SSNA1-202ENST00000459860 COL22A1Q8NFW1 1626 aaPredicted RBP30.79■■■□□ 2.52
SSNA1-202ENST00000459860 TOPAZ1Q8N9V7 1692 aa30.78■■■□□ 2.52
SSNA1-202ENST00000459860 XPCQ01831 940 aaPredicted RBP30.77■■■□□ 2.52
SSNA1-202ENST00000459860 TRPC5Q9UL62 973 aaPredicted RBP30.77■■■□□ 2.52
SSNA1-202ENST00000459860 PRR36Q9H6K5 1346 aa30.76■■■□□ 2.52
SSNA1-202ENST00000459860 SRPK2P78362 688 aaKnown RBP30.76■■■□□ 2.51
SSNA1-202ENST00000459860 NUDT16Q96DE0 195 aaKnown RBP30.75■■■□□ 2.51
SSNA1-202ENST00000459860 EVC2Q86UK5 1308 aa30.74■■■□□ 2.51
SSNA1-202ENST00000459860 ATRNO75882 1429 aa30.74■■■□□ 2.51
SSNA1-202ENST00000459860 PMFBP1Q8TBY8 1022 aa30.73■■■□□ 2.51
SSNA1-202ENST00000459860 SBNO2Q9Y2G9 1366 aa30.73■■■□□ 2.51
SSNA1-202ENST00000459860 BCL9LQ86UU0 1499 aa30.71■■■□□ 2.51
SSNA1-202ENST00000459860 PSME1Q06323 249 aa30.7■■■□□ 2.51
SSNA1-202ENST00000459860 KRT28Q7Z3Y7 464 aa30.69■■■□□ 2.5
SSNA1-202ENST00000459860 NGDNQ8NEJ9 315 aaKnown RBP30.68■■■□□ 2.5
SSNA1-202ENST00000459860 CCDC61Q9Y6R9 512 aa30.68■■■□□ 2.5
SSNA1-202ENST00000459860 CABP2Q9NPB3 220 aa30.67■■■□□ 2.5
SSNA1-202ENST00000459860 SPATA31A3Q5VYP0 1347 aa30.67■■■□□ 2.5
SSNA1-202ENST00000459860 USP47Q96K76 1375 aa30.66■■■□□ 2.5
SSNA1-202ENST00000459860 PPIP5K1Q6PFW1 1433 aa30.64■■■□□ 2.5
SSNA1-202ENST00000459860 ATAD2Q6PL18 1390 aa30.64■■■□□ 2.5
SSNA1-202ENST00000459860 TNS3Q68CZ2 1445 aa30.64■■■□□ 2.49
SSNA1-202ENST00000459860 TRPM3Q9HCF6 1732 aaPredicted RBP30.62■■■□□ 2.49
SSNA1-202ENST00000459860 SLC24A1O60721 1099 aa30.62■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 214.2 ms