RNA–Protein interactions for RNA: ENST00000456246.1

MSH6-207, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 846 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-207ENST00000456246 LRRC59Q96AG4 307 aaKnown RBP26.12■■□□□ 1.77
MSH6-207ENST00000456246 CFAP70Q5T0N1 1121 aa26.11■■□□□ 1.77
MSH6-207ENST00000456246 RGS17Q9UGC6 210 aaPredicted RBP26.1■■□□□ 1.77
MSH6-207ENST00000456246 WAPLQ7Z5K2 1190 aa26.09■■□□□ 1.77
MSH6-207ENST00000456246 DCAF11Q8TEB1 546 aa26.07■■□□□ 1.76
MSH6-207ENST00000456246 DLC1Q96QB1 1528 aa26.07■■□□□ 1.76
MSH6-207ENST00000456246 LRP6O75581 1613 aa26.06■■□□□ 1.76
MSH6-207ENST00000456246 ORAI2Q96SN7 254 aa26.06■■□□□ 1.76
MSH6-207ENST00000456246 PLEKHH1Q9ULM0 1364 aa26.06■■□□□ 1.76
MSH6-207ENST00000456246 MEX3CQ5U5Q3 659 aaKnown RBP26.05■■□□□ 1.76
MSH6-207ENST00000456246 ADGRB1O14514 1584 aa26.04■■□□□ 1.76
MSH6-207ENST00000456246 SOS2Q07890 1332 aaPredicted RBP26.04■■□□□ 1.76
MSH6-207ENST00000456246 FMN2Q9NZ56 1722 aa26.02■■□□□ 1.76
MSH6-207ENST00000456246 KDM2AQ9Y2K7 1162 aa26.02■■□□□ 1.76
MSH6-207ENST00000456246 NPHP3Q7Z494 1330 aa26.02■■□□□ 1.76
MSH6-207ENST00000456246 PNPLA6Q8IY17 1366 aa26.02■■□□□ 1.76
MSH6-207ENST00000456246 ESCO1Q5FWF5 840 aa26.01■■□□□ 1.75
MSH6-207ENST00000456246 DDX17Q92841 729 aaKnown RBP26.01■■□□□ 1.75
MSH6-207ENST00000456246 POTEAQ6S8J7 498 aa25.98■■□□□ 1.75
MSH6-207ENST00000456246 PRAM1Q96QH2 718 aa25.98■■□□□ 1.75
MSH6-207ENST00000456246 KIF1AQ12756 1690 aa25.97■■□□□ 1.75
MSH6-207ENST00000456246 ZNF772Q68DY9 489 aaPredicted RBP25.97■■□□□ 1.75
MSH6-207ENST00000456246 POGKQ9P215 609 aa25.97■■□□□ 1.75
MSH6-207ENST00000456246 NUTM2BA6NNL0 878 aaPredicted RBP25.96■■□□□ 1.75
MSH6-207ENST00000456246 NUTM2EB1AL46 878 aaPredicted RBP25.96■■□□□ 1.75
MSH6-207ENST00000456246 NUTM2AQ8IVF1 878 aaPredicted RBP25.96■■□□□ 1.75
MSH6-207ENST00000456246 ADGRB2O60241 1585 aa25.95■■□□□ 1.75
MSH6-207ENST00000456246 PXDNQ92626 1479 aa25.93■■□□□ 1.74
MSH6-207ENST00000456246 NUTM2FA1L443 756 aa25.92■■□□□ 1.74
MSH6-207ENST00000456246 TRAK1Q9UPV9 953 aa25.92■■□□□ 1.74
MSH6-207ENST00000456246 COL22A1Q8NFW1 1626 aaPredicted RBP25.92■■□□□ 1.74
MSH6-207ENST00000456246 KIAA1210Q9ULL0 1709 aa25.91■■□□□ 1.74
MSH6-207ENST00000456246 ANKARQ7Z5J8 1434 aa25.91■■□□□ 1.74
MSH6-207ENST00000456246 FOXO3O43524 673 aa25.91■■□□□ 1.74
MSH6-207ENST00000456246 EIF3AQ14152 1382 aaKnown RBP25.91■■□□□ 1.74
MSH6-207ENST00000456246 SAFB2Q14151 953 aaKnown RBP eCLIP25.9■■□□□ 1.74
MSH6-207ENST00000456246 AFF2P51816 1311 aa25.86■■□□□ 1.73
MSH6-207ENST00000456246 PHF8Q9UPP1 1060 aa25.85■■□□□ 1.73
MSH6-207ENST00000456246 ARHGEF28Q8N1W1 1705 aaKnown RBP25.85■■□□□ 1.73
MSH6-207ENST00000456246 RGPD8O14715 1765 aaPredicted RBP25.83■■□□□ 1.73
MSH6-207ENST00000456246 C8orf37Q96NL8 207 aa25.83■■□□□ 1.73
MSH6-207ENST00000456246 XPCQ01831 940 aaPredicted RBP25.81■■□□□ 1.72
MSH6-207ENST00000456246 PSME1Q06323 249 aa25.81■■□□□ 1.72
MSH6-207ENST00000456246 TULP4Q9NRJ4 1543 aa25.81■■□□□ 1.72
MSH6-207ENST00000456246 MINK1Q8N4C8 1332 aaPredicted RBP25.81■■□□□ 1.72
MSH6-207ENST00000456246 ADAMTS2O95450 1211 aa25.8■■□□□ 1.72
MSH6-207ENST00000456246 SPATA31A3Q5VYP0 1347 aa25.8■■□□□ 1.72
MSH6-207ENST00000456246 USP32Q8NFA0 1604 aa25.8■■□□□ 1.72
MSH6-207ENST00000456246 KRT28Q7Z3Y7 464 aa25.79■■□□□ 1.72
MSH6-207ENST00000456246 NGLY1Q96IV0 654 aa25.79■■□□□ 1.72
MSH6-207ENST00000456246 CDK12Q9NYV4 1490 aaPredicted RBP25.79■■□□□ 1.72
MSH6-207ENST00000456246 WASLO00401 505 aaPredicted RBP25.78■■□□□ 1.72
MSH6-207ENST00000456246 RXRBP28702 533 aa25.78■■□□□ 1.72
MSH6-207ENST00000456246 HIRIP3Q9BW71 556 aaPredicted RBP25.78■■□□□ 1.72
MSH6-207ENST00000456246 SBNO1A3KN83 1393 aa25.77■■□□□ 1.72
MSH6-207ENST00000456246 TNS3Q68CZ2 1445 aa25.77■■□□□ 1.72
MSH6-207ENST00000456246 MARF1Q9Y4F3 1742 aaKnown RBP25.74■■□□□ 1.71
MSH6-207ENST00000456246 ARHGEF10O15013 1369 aa25.73■■□□□ 1.71
MSH6-207ENST00000456246 L3MBTL2Q969R5 705 aa25.73■■□□□ 1.71
MSH6-207ENST00000456246 ITSN1Q15811 1721 aa25.72■■□□□ 1.71
MSH6-207ENST00000456246 FNBP4Q8N3X1 1017 aaPredicted RBP25.72■■□□□ 1.71
MSH6-207ENST00000456246 GPRASP1Q5JY77 1395 aa25.71■■□□□ 1.71
MSH6-207ENST00000456246 RBM6P78332 1123 aaKnown RBP25.71■■□□□ 1.71
MSH6-207ENST00000456246 TRIM26Q12899 539 aaPredicted RBP25.71■■□□□ 1.71
MSH6-207ENST00000456246 QTRT2Q9H974 415 aaKnown RBP25.71■■□□□ 1.71
MSH6-207ENST00000456246 PRR36Q9H6K5 1346 aa25.7■■□□□ 1.71
MSH6-207ENST00000456246 NBPF1Q3BBV0 1214 aa25.7■■□□□ 1.7
MSH6-207ENST00000456246 PMFBP1Q8TBY8 1022 aa25.7■■□□□ 1.7
MSH6-207ENST00000456246 SIN3AQ96ST3 1273 aa25.7■■□□□ 1.7
MSH6-207ENST00000456246 USP21Q9UK80 565 aa25.7■■□□□ 1.7
MSH6-207ENST00000456246 ATP7BP35670 1465 aa25.69■■□□□ 1.7
MSH6-207ENST00000456246 TRPC5Q9UL62 973 aaPredicted RBP25.68■■□□□ 1.7
MSH6-207ENST00000456246 NEUROD1Q13562 356 aa25.67■■□□□ 1.7
MSH6-207ENST00000456246 TRPM1Q7Z4N2 1603 aa25.66■■□□□ 1.7
MSH6-207ENST00000456246 TRPM3Q9HCF6 1732 aaPredicted RBP25.66■■□□□ 1.7
MSH6-207ENST00000456246 CENPJQ9HC77 1338 aaPredicted RBP25.65■■□□□ 1.7
MSH6-207ENST00000456246 HAP1P54257 671 aaPredicted RBP25.65■■□□□ 1.7
MSH6-207ENST00000456246 NGDNQ8NEJ9 315 aaKnown RBP25.65■■□□□ 1.7
MSH6-207ENST00000456246 NUDT16Q96DE0 195 aaKnown RBP25.65■■□□□ 1.7
MSH6-207ENST00000456246 CDK19Q9BWU1 502 aa25.64■■□□□ 1.7
MSH6-207ENST00000456246 ATRNO75882 1429 aa25.63■■□□□ 1.69
MSH6-207ENST00000456246 LMOD2Q6P5Q4 547 aa25.63■■□□□ 1.69
MSH6-207ENST00000456246 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.62■■□□□ 1.69
MSH6-207ENST00000456246 TOPAZ1Q8N9V7 1692 aa25.61■■□□□ 1.69
MSH6-207ENST00000456246 ABCA3Q99758 1704 aa25.61■■□□□ 1.69
MSH6-207ENST00000456246 RGS12O14924 1447 aa25.61■■□□□ 1.69
MSH6-207ENST00000456246 ALS2Q96Q42 1657 aa25.61■■□□□ 1.69
MSH6-207ENST00000456246 BCL9LQ86UU0 1499 aa25.6■■□□□ 1.69
MSH6-207ENST00000456246 CCDC61Q9Y6R9 512 aa25.6■■□□□ 1.69
MSH6-207ENST00000456246 ROCK2O75116 1388 aaKnown RBP25.59■■□□□ 1.69
MSH6-207ENST00000456246 SLIT2O94813 1529 aa25.59■■□□□ 1.69
MSH6-207ENST00000456246 QRICH2Q9H0J4 1663 aa25.59■■□□□ 1.69
MSH6-207ENST00000456246 POLR3AO14802 1390 aaPredicted RBP25.57■■□□□ 1.68
MSH6-207ENST00000456246 UNC5CLQ8IV45 518 aa25.56■■□□□ 1.68
MSH6-207ENST00000456246 PLEKHG3A1L390 1219 aa25.55■■□□□ 1.68
MSH6-207ENST00000456246 CABLES1Q8TDN4 633 aa25.55■■□□□ 1.68
MSH6-207ENST00000456246 TONSLQ96HA7 1378 aa25.55■■□□□ 1.68
MSH6-207ENST00000456246 NWD2Q9ULI1 1742 aa25.54■■□□□ 1.68
MSH6-207ENST00000456246 SRPK2P78362 688 aaKnown RBP25.54■■□□□ 1.68
MSH6-207ENST00000456246 PAK3O75914 559 aaPredicted RBP25.53■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 118.2 ms