RNA–Protein interactions for RNA: ENST00000455548.2

SMPD4-214, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 3

Gene SMPD4, Length 547 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-214ENST00000455548 PLEKHH1Q9ULM0 1364 aa23.5■■□□□ 1.35
SMPD4-214ENST00000455548 MED1Q15648 1581 aaPredicted RBP23.48■■□□□ 1.35
SMPD4-214ENST00000455548 COL16A1Q07092 1604 aaPredicted RBP23.48■■□□□ 1.35
SMPD4-214ENST00000455548 NEUROD1Q13562 356 aa23.47■■□□□ 1.35
SMPD4-214ENST00000455548 PRAM1Q96QH2 718 aa23.46■■□□□ 1.35
SMPD4-214ENST00000455548 NHSL1Q5SYE7 1610 aa23.45■■□□□ 1.34
SMPD4-214ENST00000455548 L3MBTL2Q969R5 705 aa23.45■■□□□ 1.34
SMPD4-214ENST00000455548 POGKQ9P215 609 aa23.45■■□□□ 1.34
SMPD4-214ENST00000455548 TRAK1Q9UPV9 953 aa23.44■■□□□ 1.34
SMPD4-214ENST00000455548 JCADQ9P266 1359 aa23.43■■□□□ 1.34
SMPD4-214ENST00000455548 FMN2Q9NZ56 1722 aa23.43■■□□□ 1.34
SMPD4-214ENST00000455548 ARHGEF28Q8N1W1 1705 aaKnown RBP23.4■■□□□ 1.34
SMPD4-214ENST00000455548 SAFB2Q14151 953 aaKnown RBP eCLIP23.4■■□□□ 1.34
SMPD4-214ENST00000455548 ORAI2Q96SN7 254 aa23.4■■□□□ 1.34
SMPD4-214ENST00000455548 ADGRB2O60241 1585 aa23.39■■□□□ 1.33
SMPD4-214ENST00000455548 SHPRHQ149N8 1683 aa23.38■■□□□ 1.33
SMPD4-214ENST00000455548 ESCO1Q5FWF5 840 aa23.36■■□□□ 1.33
SMPD4-214ENST00000455548 NBPF1Q3BBV0 1214 aa23.35■■□□□ 1.33
SMPD4-214ENST00000455548 PCGF6Q9BYE7 350 aa23.35■■□□□ 1.33
SMPD4-214ENST00000455548 NUTM2FA1L443 756 aa23.34■■□□□ 1.33
SMPD4-214ENST00000455548 DDX17Q92841 729 aaKnown RBP23.34■■□□□ 1.33
SMPD4-214ENST00000455548 LRRC59Q96AG4 307 aaKnown RBP23.34■■□□□ 1.33
SMPD4-214ENST00000455548 TONSLQ96HA7 1378 aa23.34■■□□□ 1.33
SMPD4-214ENST00000455548 TRPM1Q7Z4N2 1603 aa23.33■■□□□ 1.33
SMPD4-214ENST00000455548 PHF23Q9BUL5 403 aaPredicted RBP23.33■■□□□ 1.33
SMPD4-214ENST00000455548 SPATA31A6Q5VVP1 1343 aa23.33■■□□□ 1.32
SMPD4-214ENST00000455548 NPHP3Q7Z494 1330 aa23.33■■□□□ 1.32
SMPD4-214ENST00000455548 MINK1Q8N4C8 1332 aaPredicted RBP23.33■■□□□ 1.32
SMPD4-214ENST00000455548 KIF1AQ12756 1690 aa23.32■■□□□ 1.32
SMPD4-214ENST00000455548 RGPD8O14715 1765 aaPredicted RBP23.32■■□□□ 1.32
SMPD4-214ENST00000455548 EIF3AQ14152 1382 aaKnown RBP23.31■■□□□ 1.32
SMPD4-214ENST00000455548 SOS2Q07890 1332 aaPredicted RBP23.31■■□□□ 1.32
SMPD4-214ENST00000455548 HIRIP3Q9BW71 556 aaPredicted RBP23.3■■□□□ 1.32
SMPD4-214ENST00000455548 ANKARQ7Z5J8 1434 aa23.3■■□□□ 1.32
SMPD4-214ENST00000455548 WASLO00401 505 aaPredicted RBP23.27■■□□□ 1.32
SMPD4-214ENST00000455548 TULP4Q9NRJ4 1543 aa23.27■■□□□ 1.32
SMPD4-214ENST00000455548 USP32Q8NFA0 1604 aa23.26■■□□□ 1.31
SMPD4-214ENST00000455548 FOXO3O43524 673 aa23.26■■□□□ 1.31
SMPD4-214ENST00000455548 PHF8Q9UPP1 1060 aa23.26■■□□□ 1.31
SMPD4-214ENST00000455548 ROCK2O75116 1388 aaKnown RBP23.26■■□□□ 1.31
SMPD4-214ENST00000455548 PNPLA6Q8IY17 1366 aa23.26■■□□□ 1.31
SMPD4-214ENST00000455548 PXDNQ92626 1479 aa23.25■■□□□ 1.31
SMPD4-214ENST00000455548 CENPJQ9HC77 1338 aaPredicted RBP23.24■■□□□ 1.31
SMPD4-214ENST00000455548 NBPF8Q3BBV2 869 aa23.23■■□□□ 1.31
SMPD4-214ENST00000455548 CLSPNQ9HAW4 1339 aa23.23■■□□□ 1.31
SMPD4-214ENST00000455548 LRP6O75581 1613 aa23.22■■□□□ 1.31
SMPD4-214ENST00000455548 GPRASP1Q5JY77 1395 aa23.21■■□□□ 1.31
SMPD4-214ENST00000455548 QRICH2Q9H0J4 1663 aa23.21■■□□□ 1.31
SMPD4-214ENST00000455548 ITSN1Q15811 1721 aa23.21■■□□□ 1.31
SMPD4-214ENST00000455548 MEX3CQ5U5Q3 659 aaKnown RBP23.2■■□□□ 1.3
SMPD4-214ENST00000455548 ILDR2Q71H61 639 aa23.2■■□□□ 1.3
SMPD4-214ENST00000455548 PRR36Q9H6K5 1346 aa23.19■■□□□ 1.3
SMPD4-214ENST00000455548 NUTM2BA6NNL0 878 aaPredicted RBP23.19■■□□□ 1.3
SMPD4-214ENST00000455548 NUTM2EB1AL46 878 aaPredicted RBP23.19■■□□□ 1.3
SMPD4-214ENST00000455548 XPCQ01831 940 aaPredicted RBP23.19■■□□□ 1.3
SMPD4-214ENST00000455548 NUTM2AQ8IVF1 878 aaPredicted RBP23.19■■□□□ 1.3
SMPD4-214ENST00000455548 COL22A1Q8NFW1 1626 aaPredicted RBP23.19■■□□□ 1.3
SMPD4-214ENST00000455548 PSME1Q06323 249 aa23.18■■□□□ 1.3
SMPD4-214ENST00000455548 KRT28Q7Z3Y7 464 aa23.18■■□□□ 1.3
SMPD4-214ENST00000455548 RALGAPBQ86X10 1494 aa23.17■■□□□ 1.3
SMPD4-214ENST00000455548 CDK19Q9BWU1 502 aa23.17■■□□□ 1.3
SMPD4-214ENST00000455548 ATP7BP35670 1465 aa23.17■■□□□ 1.3
SMPD4-214ENST00000455548 PMFBP1Q8TBY8 1022 aa23.16■■□□□ 1.3
SMPD4-214ENST00000455548 NUDT16Q96DE0 195 aaKnown RBP23.16■■□□□ 1.3
SMPD4-214ENST00000455548 RGS17Q9UGC6 210 aaPredicted RBP23.15■■□□□ 1.3
SMPD4-214ENST00000455548 SPATA31A3Q5VYP0 1347 aa23.14■■□□□ 1.3
SMPD4-214ENST00000455548 CARD11Q9BXL7 1154 aa23.14■■□□□ 1.29
SMPD4-214ENST00000455548 SBNO1A3KN83 1393 aa23.13■■□□□ 1.29
SMPD4-214ENST00000455548 TOPAZ1Q8N9V7 1692 aa23.13■■□□□ 1.29
SMPD4-214ENST00000455548 TNS3Q68CZ2 1445 aa23.12■■□□□ 1.29
SMPD4-214ENST00000455548 NGDNQ8NEJ9 315 aaKnown RBP23.11■■□□□ 1.29
SMPD4-214ENST00000455548 TIMELESSQ9UNS1 1208 aa23.11■■□□□ 1.29
SMPD4-214ENST00000455548 SRPK2P78362 688 aaKnown RBP23.1■■□□□ 1.29
SMPD4-214ENST00000455548 CCDC61Q9Y6R9 512 aa23.1■■□□□ 1.29
SMPD4-214ENST00000455548 EVC2Q86UK5 1308 aa23.08■■□□□ 1.29
SMPD4-214ENST00000455548 TRPM3Q9HCF6 1732 aaPredicted RBP23.08■■□□□ 1.29
SMPD4-214ENST00000455548 ZNF772Q68DY9 489 aaPredicted RBP23.08■■□□□ 1.29
SMPD4-214ENST00000455548 CCER1Q8TC90 406 aaPredicted RBP23.08■■□□□ 1.29
SMPD4-214ENST00000455548 ARHGEF10O15013 1369 aa23.08■■□□□ 1.29
SMPD4-214ENST00000455548 ADAMTS2O95450 1211 aa23.06■■□□□ 1.28
SMPD4-214ENST00000455548 POTEAQ6S8J7 498 aa23.06■■□□□ 1.28
SMPD4-214ENST00000455548 MARF1Q9Y4F3 1742 aaKnown RBP23.05■■□□□ 1.28
SMPD4-214ENST00000455548 SBNO2Q9Y2G9 1366 aa23.05■■□□□ 1.28
SMPD4-214ENST00000455548 PLEKHG3A1L390 1219 aa23.05■■□□□ 1.28
SMPD4-214ENST00000455548 C8orf37Q96NL8 207 aa23.05■■□□□ 1.28
SMPD4-214ENST00000455548 CABP2Q9NPB3 220 aa23.05■■□□□ 1.28
SMPD4-214ENST00000455548 AFF2P51816 1311 aa23.05■■□□□ 1.28
SMPD4-214ENST00000455548 POLR3AO14802 1390 aaPredicted RBP23.04■■□□□ 1.28
SMPD4-214ENST00000455548 ALS2Q96Q42 1657 aa23.04■■□□□ 1.28
SMPD4-214ENST00000455548 LMOD2Q6P5Q4 547 aa23.04■■□□□ 1.28
SMPD4-214ENST00000455548 NGLY1Q96IV0 654 aa23.03■■□□□ 1.28
SMPD4-214ENST00000455548 ACEP12821 1306 aa23.03■■□□□ 1.28
SMPD4-214ENST00000455548 PPIP5K1Q6PFW1 1433 aa23.02■■□□□ 1.28
SMPD4-214ENST00000455548 SOCS7O14512 581 aa23.01■■□□□ 1.27
SMPD4-214ENST00000455548 ABCA3Q99758 1704 aa22.99■■□□□ 1.27
SMPD4-214ENST00000455548 PAK3O75914 559 aaPredicted RBP22.99■■□□□ 1.27
SMPD4-214ENST00000455548 HAP1P54257 671 aaPredicted RBP22.99■■□□□ 1.27
SMPD4-214ENST00000455548 ATAD2Q6PL18 1390 aa22.97■■□□□ 1.27
SMPD4-214ENST00000455548 FNBP4Q8N3X1 1017 aaPredicted RBP22.96■■□□□ 1.27
SMPD4-214ENST00000455548 CABP1Q9NZU7 370 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 301.8 ms