RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 SLC52A1Q9NWF4 448 aa15.37■□□□□ 0.05
SMPD4-213ENST00000454468 ASXL1Q8IXJ9 1541 aa15.37■□□□□ 0.05
SMPD4-213ENST00000454468 MYH16Q9H6N6 1097 aa15.36■□□□□ 0.05
SMPD4-213ENST00000454468 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.36■□□□□ 0.05
SMPD4-213ENST00000454468 EIF2AK4Q9P2K8 1649 aaKnown RBP15.36■□□□□ 0.05
SMPD4-213ENST00000454468 UNC13BO14795 1591 aa15.36■□□□□ 0.05
SMPD4-213ENST00000454468 THUMPD2Q9BTF0 503 aaKnown RBP15.36■□□□□ 0.05
SMPD4-213ENST00000454468 BACH2Q9BYV9 841 aa15.36■□□□□ 0.05
SMPD4-213ENST00000454468 PRDM15P57071 1507 aaPredicted RBP15.36■□□□□ 0.05
SMPD4-213ENST00000454468 NCKAP5LQ9HCH0 1330 aa15.36■□□□□ 0.05
SMPD4-213ENST00000454468 RTN4Q9NQC3 1192 aaKnown RBP15.36■□□□□ 0.05
SMPD4-213ENST00000454468 PLXNC1O60486 1568 aa15.35■□□□□ 0.05
SMPD4-213ENST00000454468 SHROOM2Q13796 1616 aa15.35■□□□□ 0.05
SMPD4-213ENST00000454468 DIAPH1O60610 1272 aaKnown RBP15.35■□□□□ 0.05
SMPD4-213ENST00000454468 EXOSC9Q06265 439 aaKnown RBP15.35■□□□□ 0.05
SMPD4-213ENST00000454468 CLTCL1P53675 1640 aa15.35■□□□□ 0.05
SMPD4-213ENST00000454468 CLASP1Q7Z460 1538 aa15.35■□□□□ 0.05
SMPD4-213ENST00000454468 YEATS2Q9ULM3 1422 aa15.34■□□□□ 0.05
SMPD4-213ENST00000454468 E9PCH4 1651 aa15.34■□□□□ 0.05
SMPD4-213ENST00000454468 PTPRTO14522 1441 aa15.33■□□□□ 0.05
SMPD4-213ENST00000454468 CEBPAP49715 358 aaPredicted RBP15.33■□□□□ 0.04
SMPD4-213ENST00000454468 RPGRIP1LQ68CZ1 1315 aa15.33■□□□□ 0.04
SMPD4-213ENST00000454468 EIF5BO60841 1220 aaKnown RBP15.33■□□□□ 0.04
SMPD4-213ENST00000454468 SLC26A8Q96RN1 970 aa15.33■□□□□ 0.04
SMPD4-213ENST00000454468 RRS1Q15050 365 aaKnown RBP15.33■□□□□ 0.04
SMPD4-213ENST00000454468 ZRANB1Q9UGI0 708 aa15.32■□□□□ 0.04
SMPD4-213ENST00000454468 IGHDP01880 384 aa15.32■□□□□ 0.04
SMPD4-213ENST00000454468 TRPM2O94759 1503 aa15.31■□□□□ 0.04
SMPD4-213ENST00000454468 PRKAR2BP31323 418 aa15.31■□□□□ 0.04
SMPD4-213ENST00000454468 APBB1O00213 710 aa15.31■□□□□ 0.04
SMPD4-213ENST00000454468 UPF2Q9HAU5 1272 aaKnown RBP15.31■□□□□ 0.04
SMPD4-213ENST00000454468 ERVK-7P63135 1459 aa15.31■□□□□ 0.04
SMPD4-213ENST00000454468 SLKQ9H2G2 1235 aaPredicted RBP15.3■□□□□ 0.04
SMPD4-213ENST00000454468 FYB1O15117 783 aa15.3■□□□□ 0.04
SMPD4-213ENST00000454468 FAM161AQ3B820 660 aa15.3■□□□□ 0.04
SMPD4-213ENST00000454468 POGZQ7Z3K3 1410 aa15.29■□□□□ 0.04
SMPD4-213ENST00000454468 NUTM2GQ5VZR2 741 aa15.29■□□□□ 0.04
SMPD4-213ENST00000454468 NME9Q86XW9 330 aa15.29■□□□□ 0.04
SMPD4-213ENST00000454468 DDRGK1Q96HY6 314 aa15.29■□□□□ 0.04
SMPD4-213ENST00000454468 EMILIN1Q9Y6C2 1016 aa15.29■□□□□ 0.04
SMPD4-213ENST00000454468 MS4A1P11836 297 aa15.28■□□□□ 0.04
SMPD4-213ENST00000454468 RARSP54136 660 aaKnown RBP15.28■□□□□ 0.04
SMPD4-213ENST00000454468 BLMP54132 1417 aaPredicted RBP15.28■□□□□ 0.04
SMPD4-213ENST00000454468 PMFBP1Q8TBY8 1022 aa15.28■□□□□ 0.04
SMPD4-213ENST00000454468 ZKSCAN2Q63HK3 967 aa15.28■□□□□ 0.04
SMPD4-213ENST00000454468 LMOD2Q6P5Q4 547 aa15.28■□□□□ 0.04
SMPD4-213ENST00000454468 RLBP1P12271 317 aa15.27■□□□□ 0.04
SMPD4-213ENST00000454468 LTV1Q96GA3 475 aaPredicted RBP15.27■□□□□ 0.04
SMPD4-213ENST00000454468 POLR1AO95602 1720 aaPredicted RBP15.27■□□□□ 0.03
SMPD4-213ENST00000454468 TMPOP42166 694 aaKnown RBP15.27■□□□□ 0.03
SMPD4-213ENST00000454468 DZIP1LQ8IYY4 767 aaKnown RBP15.26■□□□□ 0.03
SMPD4-213ENST00000454468 RBM33Q96EV2 1170 aaKnown RBP15.26■□□□□ 0.03
SMPD4-213ENST00000454468 COG3Q96JB2 828 aa15.26■□□□□ 0.03
SMPD4-213ENST00000454468 DCTN1Q14203 1278 aa15.26■□□□□ 0.03
SMPD4-213ENST00000454468 NKTRP30414 1462 aaKnown RBP15.26■□□□□ 0.03
SMPD4-213ENST00000454468 RWDD1Q9H446 243 aaPredicted RBP15.25■□□□□ 0.03
SMPD4-213ENST00000454468 C1orf115Q9H7X2 142 aa15.25■□□□□ 0.03
SMPD4-213ENST00000454468 A0A1W2PP64 1363 aa15.25■□□□□ 0.03
SMPD4-213ENST00000454468 MADDQ8WXG6 1647 aa15.24■□□□□ 0.03
SMPD4-213ENST00000454468 PIK3C2GO75747 1445 aa15.24■□□□□ 0.03
SMPD4-213ENST00000454468 NOB1Q9ULX3 412 aaKnown RBP15.24■□□□□ 0.03
SMPD4-213ENST00000454468 MFAP1P55081 439 aaKnown RBP15.24■□□□□ 0.03
SMPD4-213ENST00000454468 NGDNQ8NEJ9 315 aaKnown RBP15.23■□□□□ 0.03
SMPD4-213ENST00000454468 ZMYM4Q5VZL5 1548 aa15.23■□□□□ 0.03
SMPD4-213ENST00000454468 SPHKAPQ2M3C7 1700 aa15.23■□□□□ 0.03
SMPD4-213ENST00000454468 HDGFP51858 240 aaKnown RBP15.23■□□□□ 0.03
SMPD4-213ENST00000454468 SSH1Q8WYL5 1049 aa15.23■□□□□ 0.03
SMPD4-213ENST00000454468 PDZRN3Q9UPQ7 1066 aa15.22■□□□□ 0.03
SMPD4-213ENST00000454468 PCDHB15Q9Y5E8 787 aa15.22■□□□□ 0.03
SMPD4-213ENST00000454468 PDE3AQ14432 1141 aa15.21■□□□□ 0.03
SMPD4-213ENST00000454468 NUDT16Q96DE0 195 aaKnown RBP15.21■□□□□ 0.03
SMPD4-213ENST00000454468 PNNQ9H307 717 aaKnown RBP15.21■□□□□ 0.03
SMPD4-213ENST00000454468 ZNF521Q96K83 1311 aa15.21■□□□□ 0.03
SMPD4-213ENST00000454468 TET3O43151 1660 aa15.21■□□□□ 0.03
SMPD4-213ENST00000454468 WDR63Q8IWG1 891 aa15.21■□□□□ 0.02
SMPD4-213ENST00000454468 NECTIN2Q92692 538 aa15.2■□□□□ 0.02
SMPD4-213ENST00000454468 FAM83GA6ND36 823 aa15.2■□□□□ 0.02
SMPD4-213ENST00000454468 ANKRD36BQ8N2N9 1353 aa15.2■□□□□ 0.02
SMPD4-213ENST00000454468 LNPKQ9C0E8 428 aa15.2■□□□□ 0.02
SMPD4-213ENST00000454468 POLR3AO14802 1390 aaPredicted RBP15.2■□□□□ 0.02
SMPD4-213ENST00000454468 EFCAB6Q5THR3 1501 aa15.19■□□□□ 0.02
SMPD4-213ENST00000454468 IPO8O15397 1037 aaKnown RBP15.18■□□□□ 0.02
SMPD4-213ENST00000454468 PHACTR3Q96KR7 559 aa15.18■□□□□ 0.02
SMPD4-213ENST00000454468 CEP152O94986 1710 aa15.18■□□□□ 0.02
SMPD4-213ENST00000454468 HSP90AA1P07900 732 aaKnown RBP15.18■□□□□ 0.02
SMPD4-213ENST00000454468 NGEFQ8N5V2 710 aa15.18■□□□□ 0.02
SMPD4-213ENST00000454468 ATAD2Q6PL18 1390 aa15.18■□□□□ 0.02
SMPD4-213ENST00000454468 ABCA9Q8IUA7 1624 aa15.17■□□□□ 0.02
SMPD4-213ENST00000454468 EID1Q9Y6B2 187 aa15.17■□□□□ 0.02
SMPD4-213ENST00000454468 RNF17Q9BXT8 1623 aaKnown RBP15.17■□□□□ 0.02
SMPD4-213ENST00000454468 SULT6B1Q6IMI4 303 aa15.17■□□□□ 0.02
SMPD4-213ENST00000454468 TMEM57Q8N5G2 664 aa15.17■□□□□ 0.02
SMPD4-213ENST00000454468 MIS18AQ9NYP9 233 aa15.17■□□□□ 0.02
SMPD4-213ENST00000454468 SLC4A10Q6U841 1118 aa15.16■□□□□ 0.02
SMPD4-213ENST00000454468 KIF1BO60333 1816 aa15.16■□□□□ 0.02
SMPD4-213ENST00000454468 KDM5AP29375 1690 aaKnown RBP15.16■□□□□ 0.02
SMPD4-213ENST00000454468 ABCA6Q8N139 1617 aa15.16■□□□□ 0.02
SMPD4-213ENST00000454468 MAP3K4Q9Y6R4 1608 aa15.16■□□□□ 0.02
SMPD4-213ENST00000454468 SEC24BO95487 1268 aa15.16■□□□□ 0.02
SMPD4-213ENST00000454468 TRIM27P14373 513 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms