RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 NEUROD1Q13562 356 aa28.87■■■□□ 2.21
COL9A3-202ENST00000452372 LAMC1P11047 1609 aa28.85■■■□□ 2.21
COL9A3-202ENST00000452372 TMEM132EQ6IEE7 984 aa28.85■■■□□ 2.21
COL9A3-202ENST00000452372 LRRC59Q96AG4 307 aaKnown RBP28.84■■■□□ 2.21
COL9A3-202ENST00000452372 ORAI2Q96SN7 254 aa28.83■■■□□ 2.21
COL9A3-202ENST00000452372 L3MBTL2Q969R5 705 aa28.82■■■□□ 2.2
COL9A3-202ENST00000452372 LRPPRCP42704 1394 aaKnown RBP28.82■■■□□ 2.2
COL9A3-202ENST00000452372 NUTM2BA6NNL0 878 aaPredicted RBP28.81■■■□□ 2.2
COL9A3-202ENST00000452372 NUTM2EB1AL46 878 aaPredicted RBP28.81■■■□□ 2.2
COL9A3-202ENST00000452372 MEX3CQ5U5Q3 659 aaKnown RBP28.81■■■□□ 2.2
COL9A3-202ENST00000452372 NUTM2AQ8IVF1 878 aaPredicted RBP28.81■■■□□ 2.2
COL9A3-202ENST00000452372 ABCC11Q96J66 1382 aa28.8■■■□□ 2.2
COL9A3-202ENST00000452372 YTHDC2Q9H6S0 1430 aaKnown RBP28.79■■■□□ 2.2
COL9A3-202ENST00000452372 STK26Q9P289 416 aa28.79■■■□□ 2.2
COL9A3-202ENST00000452372 TECPR2O15040 1411 aa28.78■■■□□ 2.2
COL9A3-202ENST00000452372 PNPLA6Q8IY17 1366 aa28.76■■■□□ 2.2
COL9A3-202ENST00000452372 ZNF772Q68DY9 489 aaPredicted RBP28.76■■■□□ 2.19
COL9A3-202ENST00000452372 WAPLQ7Z5K2 1190 aa28.76■■■□□ 2.19
COL9A3-202ENST00000452372 SOS2Q07890 1332 aaPredicted RBP28.75■■■□□ 2.19
COL9A3-202ENST00000452372 KNDC1Q76NI1 1749 aa28.74■■■□□ 2.19
COL9A3-202ENST00000452372 SIRT1Q96EB6 747 aa28.74■■■□□ 2.19
COL9A3-202ENST00000452372 ADGRB1O14514 1584 aa28.73■■■□□ 2.19
COL9A3-202ENST00000452372 PLEKHH1Q9ULM0 1364 aa28.7■■■□□ 2.18
COL9A3-202ENST00000452372 KIAA1210Q9ULL0 1709 aa28.69■■■□□ 2.18
COL9A3-202ENST00000452372 AFF2P51816 1311 aa28.69■■■□□ 2.18
COL9A3-202ENST00000452372 CDC42BPGQ6DT37 1551 aa28.68■■■□□ 2.18
COL9A3-202ENST00000452372 TONSLQ96HA7 1378 aa28.66■■■□□ 2.18
COL9A3-202ENST00000452372 CLSPNQ9HAW4 1339 aa28.66■■■□□ 2.18
COL9A3-202ENST00000452372 ESCO1Q5FWF5 840 aa28.65■■■□□ 2.18
COL9A3-202ENST00000452372 DLC1Q96QB1 1528 aa28.64■■■□□ 2.18
COL9A3-202ENST00000452372 RXRBP28702 533 aa28.64■■■□□ 2.18
COL9A3-202ENST00000452372 C8orf37Q96NL8 207 aa28.63■■■□□ 2.17
COL9A3-202ENST00000452372 TRAK1Q9UPV9 953 aa28.63■■■□□ 2.17
COL9A3-202ENST00000452372 NBPF1Q3BBV0 1214 aa28.62■■■□□ 2.17
COL9A3-202ENST00000452372 NUTM2FA1L443 756 aa28.61■■■□□ 2.17
COL9A3-202ENST00000452372 FOXO3O43524 673 aa28.6■■■□□ 2.17
COL9A3-202ENST00000452372 PRAM1Q96QH2 718 aa28.6■■■□□ 2.17
COL9A3-202ENST00000452372 ADAMTS2O95450 1211 aa28.59■■■□□ 2.17
COL9A3-202ENST00000452372 POGKQ9P215 609 aa28.59■■■□□ 2.17
COL9A3-202ENST00000452372 PXDNQ92626 1479 aa28.59■■■□□ 2.17
COL9A3-202ENST00000452372 QTRT2Q9H974 415 aaKnown RBP28.58■■■□□ 2.17
COL9A3-202ENST00000452372 NPHP3Q7Z494 1330 aa28.58■■■□□ 2.17
COL9A3-202ENST00000452372 XPCQ01831 940 aaPredicted RBP28.56■■■□□ 2.16
COL9A3-202ENST00000452372 NBPF8Q3BBV2 869 aa28.55■■■□□ 2.16
COL9A3-202ENST00000452372 CCER1Q8TC90 406 aaPredicted RBP28.55■■■□□ 2.16
COL9A3-202ENST00000452372 NGLY1Q96IV0 654 aa28.55■■■□□ 2.16
COL9A3-202ENST00000452372 FMN2Q9NZ56 1722 aa28.55■■■□□ 2.16
COL9A3-202ENST00000452372 TRPM1Q7Z4N2 1603 aa28.54■■■□□ 2.16
COL9A3-202ENST00000452372 COL22A1Q8NFW1 1626 aaPredicted RBP28.54■■■□□ 2.16
COL9A3-202ENST00000452372 CDK12Q9NYV4 1490 aaPredicted RBP28.54■■■□□ 2.16
COL9A3-202ENST00000452372 SAFB2Q14151 953 aaKnown RBP eCLIP28.54■■■□□ 2.16
COL9A3-202ENST00000452372 UPF1Q92900 1129 aaKnown RBP eCLIP28.53■■■□□ 2.16
COL9A3-202ENST00000452372 ARHGEF28Q8N1W1 1705 aaKnown RBP28.52■■■□□ 2.16
COL9A3-202ENST00000452372 RBM6P78332 1123 aaKnown RBP28.5■■■□□ 2.15
COL9A3-202ENST00000452372 FNBP4Q8N3X1 1017 aaPredicted RBP28.5■■■□□ 2.15
COL9A3-202ENST00000452372 TIMELESSQ9UNS1 1208 aa28.5■■■□□ 2.15
COL9A3-202ENST00000452372 RGPD8O14715 1765 aaPredicted RBP28.5■■■□□ 2.15
COL9A3-202ENST00000452372 ROCK2O75116 1388 aaKnown RBP28.48■■■□□ 2.15
COL9A3-202ENST00000452372 USP21Q9UK80 565 aa28.45■■■□□ 2.14
COL9A3-202ENST00000452372 SPATA31A3Q5VYP0 1347 aa28.44■■■□□ 2.14
COL9A3-202ENST00000452372 MINK1Q8N4C8 1332 aaPredicted RBP28.44■■■□□ 2.14
COL9A3-202ENST00000452372 RGS12O14924 1447 aa28.44■■■□□ 2.14
COL9A3-202ENST00000452372 KRT28Q7Z3Y7 464 aa28.44■■■□□ 2.14
COL9A3-202ENST00000452372 ADGRB2O60241 1585 aa28.43■■■□□ 2.14
COL9A3-202ENST00000452372 GPRASP1Q5JY77 1395 aa28.43■■■□□ 2.14
COL9A3-202ENST00000452372 HIRIP3Q9BW71 556 aaPredicted RBP28.42■■■□□ 2.14
COL9A3-202ENST00000452372 PHF8Q9UPP1 1060 aa28.42■■■□□ 2.14
COL9A3-202ENST00000452372 KIF1AQ12756 1690 aa28.41■■■□□ 2.14
COL9A3-202ENST00000452372 RALGAPBQ86X10 1494 aa28.4■■■□□ 2.14
COL9A3-202ENST00000452372 BCL9LQ86UU0 1499 aa28.4■■■□□ 2.14
COL9A3-202ENST00000452372 TRPC5Q9UL62 973 aaPredicted RBP28.39■■■□□ 2.14
COL9A3-202ENST00000452372 MARF1Q9Y4F3 1742 aaKnown RBP28.39■■■□□ 2.14
COL9A3-202ENST00000452372 CENPJQ9HC77 1338 aaPredicted RBP28.39■■■□□ 2.13
COL9A3-202ENST00000452372 ATRNO75882 1429 aa28.38■■■□□ 2.13
COL9A3-202ENST00000452372 WASLO00401 505 aaPredicted RBP28.38■■■□□ 2.13
COL9A3-202ENST00000452372 USP32Q8NFA0 1604 aa28.36■■■□□ 2.13
COL9A3-202ENST00000452372 CARD11Q9BXL7 1154 aa28.36■■■□□ 2.13
COL9A3-202ENST00000452372 EIF3AQ14152 1382 aaKnown RBP28.34■■■□□ 2.13
COL9A3-202ENST00000452372 ANKARQ7Z5J8 1434 aa28.33■■■□□ 2.13
COL9A3-202ENST00000452372 PSME1Q06323 249 aa28.31■■■□□ 2.12
COL9A3-202ENST00000452372 PMFBP1Q8TBY8 1022 aa28.31■■■□□ 2.12
COL9A3-202ENST00000452372 PRR36Q9H6K5 1346 aa28.31■■■□□ 2.12
COL9A3-202ENST00000452372 QRICH2Q9H0J4 1663 aa28.3■■■□□ 2.12
COL9A3-202ENST00000452372 SBNO1A3KN83 1393 aa28.3■■■□□ 2.12
COL9A3-202ENST00000452372 CABLES1Q8TDN4 633 aa28.3■■■□□ 2.12
COL9A3-202ENST00000452372 CDK19Q9BWU1 502 aa28.3■■■□□ 2.12
COL9A3-202ENST00000452372 TULP4Q9NRJ4 1543 aa28.29■■■□□ 2.12
COL9A3-202ENST00000452372 TNS3Q68CZ2 1445 aa28.29■■■□□ 2.12
COL9A3-202ENST00000452372 SLIT2O94813 1529 aa28.28■■■□□ 2.12
COL9A3-202ENST00000452372 GJD4Q96KN9 370 aaPredicted RBP28.27■■■□□ 2.12
COL9A3-202ENST00000452372 UNC5CLQ8IV45 518 aa28.25■■■□□ 2.11
COL9A3-202ENST00000452372 NUDT16Q96DE0 195 aaKnown RBP28.25■■■□□ 2.11
COL9A3-202ENST00000452372 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.23■■■□□ 2.11
COL9A3-202ENST00000452372 ATP7BP35670 1465 aa28.21■■■□□ 2.11
COL9A3-202ENST00000452372 TRPM3Q9HCF6 1732 aaPredicted RBP28.21■■■□□ 2.11
COL9A3-202ENST00000452372 PLEKHG5O94827 1062 aa28.2■■■□□ 2.1
COL9A3-202ENST00000452372 LMOD2Q6P5Q4 547 aa28.2■■■□□ 2.1
COL9A3-202ENST00000452372 ARHGEF10O15013 1369 aa28.2■■■□□ 2.1
COL9A3-202ENST00000452372 EP400Q96L91 3159 aa28.19■■■□□ 2.1
COL9A3-202ENST00000452372 EVC2Q86UK5 1308 aa28.19■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms