RNA–Protein interactions for RNA: ENST00000449223.3

RPS28-202, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 1,523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-202ENST00000449223 PUS7Q96PZ0 661 aaKnown RBP26.82■■□□□ 1.88
RPS28-202ENST00000449223 WAPLQ7Z5K2 1190 aa26.8■■□□□ 1.88
RPS28-202ENST00000449223 NKTRP30414 1462 aaKnown RBP26.8■■□□□ 1.88
RPS28-202ENST00000449223 KCNA6P17658 529 aa26.8■■□□□ 1.88
RPS28-202ENST00000449223 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.79■■□□□ 1.88
RPS28-202ENST00000449223 EVC2Q86UK5 1308 aa26.77■■□□□ 1.88
RPS28-202ENST00000449223 MYOM1P52179 1685 aa26.77■■□□□ 1.88
RPS28-202ENST00000449223 SAFB2Q14151 953 aaKnown RBP eCLIP26.75■■□□□ 1.87
RPS28-202ENST00000449223 STRCP1A6NGW2 1772 aa26.74■■□□□ 1.87
RPS28-202ENST00000449223 DDX10Q13206 875 aaKnown RBP26.74■■□□□ 1.87
RPS28-202ENST00000449223 DIEXFQ68CQ4 756 aaKnown RBP26.74■■□□□ 1.87
RPS28-202ENST00000449223 MINK1Q8N4C8 1332 aaPredicted RBP26.73■■□□□ 1.87
RPS28-202ENST00000449223 DMRT2Q9Y5R5 561 aa26.72■■□□□ 1.87
RPS28-202ENST00000449223 NALCNQ8IZF0 1738 aa26.69■■□□□ 1.86
RPS28-202ENST00000449223 ATAD2Q6PL18 1390 aa26.68■■□□□ 1.86
RPS28-202ENST00000449223 WASLO00401 505 aaPredicted RBP26.67■■□□□ 1.86
RPS28-202ENST00000449223 NINLQ9Y2I6 1382 aa26.67■■□□□ 1.86
RPS28-202ENST00000449223 NCOA3Q9Y6Q9 1424 aa26.67■■□□□ 1.86
RPS28-202ENST00000449223 CDC42BPGQ6DT37 1551 aa26.67■■□□□ 1.86
RPS28-202ENST00000449223 ADGRL3Q9HAR2 1447 aa26.65■■□□□ 1.86
RPS28-202ENST00000449223 POLR3GLQ9BT43 218 aa26.65■■□□□ 1.86
RPS28-202ENST00000449223 CDK19Q9BWU1 502 aa26.65■■□□□ 1.86
RPS28-202ENST00000449223 SRPK2P78362 688 aaKnown RBP26.61■■□□□ 1.85
RPS28-202ENST00000449223 CABP2Q9NPB3 220 aa26.61■■□□□ 1.85
RPS28-202ENST00000449223 ATP7BP35670 1465 aa26.61■■□□□ 1.85
RPS28-202ENST00000449223 FMN2Q9NZ56 1722 aa26.61■■□□□ 1.85
RPS28-202ENST00000449223 TOPAZ1Q8N9V7 1692 aa26.61■■□□□ 1.85
RPS28-202ENST00000449223 USP32Q8NFA0 1604 aa26.58■■□□□ 1.85
RPS28-202ENST00000449223 ANKARQ7Z5J8 1434 aa26.57■■□□□ 1.84
RPS28-202ENST00000449223 XIRP1Q702N8 1843 aaKnown RBP26.57■■□□□ 1.84
RPS28-202ENST00000449223 PROSER2Q86WR7 435 aaPredicted RBP26.57■■□□□ 1.84
RPS28-202ENST00000449223 ITSN1Q15811 1721 aa26.57■■□□□ 1.84
RPS28-202ENST00000449223 PER1O15534 1290 aaPredicted RBP26.55■■□□□ 1.84
RPS28-202ENST00000449223 DCCP43146 1447 aa26.55■■□□□ 1.84
RPS28-202ENST00000449223 TMEM94Q12767 1356 aa26.54■■□□□ 1.84
RPS28-202ENST00000449223 LRRC7Q96NW7 1537 aa26.54■■□□□ 1.84
RPS28-202ENST00000449223 ZNF335Q9H4Z2 1342 aaPredicted RBP26.54■■□□□ 1.84
RPS28-202ENST00000449223 ANKRD36BQ8N2N9 1353 aa26.54■■□□□ 1.84
RPS28-202ENST00000449223 PANK3Q9H999 370 aa26.54■■□□□ 1.84
RPS28-202ENST00000449223 CD163L1Q9NR16 1453 aa26.53■■□□□ 1.84
RPS28-202ENST00000449223 NUDT16Q96DE0 195 aaKnown RBP26.52■■□□□ 1.84
RPS28-202ENST00000449223 SLC12A5Q9H2X9 1139 aa26.52■■□□□ 1.84
RPS28-202ENST00000449223 CCDC61Q9Y6R9 512 aa26.52■■□□□ 1.84
RPS28-202ENST00000449223 PRR36Q9H6K5 1346 aa26.52■■□□□ 1.84
RPS28-202ENST00000449223 AEBP2Q6ZN18 517 aaPredicted RBP26.51■■□□□ 1.83
RPS28-202ENST00000449223 PPIP5K1Q6PFW1 1433 aa26.5■■□□□ 1.83
RPS28-202ENST00000449223 C19orf44Q9H6X5 657 aa26.49■■□□□ 1.83
RPS28-202ENST00000449223 TMC1Q8TDI8 760 aa26.49■■□□□ 1.83
RPS28-202ENST00000449223 RGPD8O14715 1765 aaPredicted RBP26.48■■□□□ 1.83
RPS28-202ENST00000449223 CPSF1Q10570 1443 aaKnown RBP26.47■■□□□ 1.83
RPS28-202ENST00000449223 AKAP12Q02952 1782 aa26.47■■□□□ 1.83
RPS28-202ENST00000449223 RBM33Q96EV2 1170 aaKnown RBP26.47■■□□□ 1.83
RPS28-202ENST00000449223 CABP1Q9NZU7 370 aa26.46■■□□□ 1.83
RPS28-202ENST00000449223 A0A1W2PP64 1363 aa26.46■■□□□ 1.83
RPS28-202ENST00000449223 NPC1L1Q9UHC9 1359 aa26.46■■□□□ 1.83
RPS28-202ENST00000449223 LTBP4Q8N2S1 1624 aa26.46■■□□□ 1.83
RPS28-202ENST00000449223 MON2Q7Z3U7 1717 aa26.45■■□□□ 1.82
RPS28-202ENST00000449223 PLEKHG3A1L390 1219 aa26.44■■□□□ 1.82
RPS28-202ENST00000449223 TERF2IPQ9NYB0 399 aa26.44■■□□□ 1.82
RPS28-202ENST00000449223 C14orf37Q86TY3 774 aa26.43■■□□□ 1.82
RPS28-202ENST00000449223 CARD14Q9BXL6 1004 aa26.43■■□□□ 1.82
RPS28-202ENST00000449223 KTN1Q86UP2 1357 aaKnown RBP26.42■■□□□ 1.82
RPS28-202ENST00000449223 MSH6P52701 1360 aa26.41■■□□□ 1.82
RPS28-202ENST00000449223 ANP32CO43423 234 aa26.41■■□□□ 1.82
RPS28-202ENST00000449223 KNSTRNQ9Y448 316 aa26.41■■□□□ 1.82
RPS28-202ENST00000449223 NSD3Q9BZ95 1437 aa26.41■■□□□ 1.82
RPS28-202ENST00000449223 POLR3AO14802 1390 aaPredicted RBP26.41■■□□□ 1.82
RPS28-202ENST00000449223 AMER1Q5JTC6 1135 aaPredicted RBP26.39■■□□□ 1.82
RPS28-202ENST00000449223 HDGFL2Q7Z4V5 671 aaPredicted RBP26.39■■□□□ 1.82
RPS28-202ENST00000449223 PRKRIP1Q9H875 184 aaPredicted RBP26.39■■□□□ 1.81
RPS28-202ENST00000449223 MST1RQ04912 1400 aa26.38■■□□□ 1.81
RPS28-202ENST00000449223 NRKQ7Z2Y5 1582 aa26.38■■□□□ 1.81
RPS28-202ENST00000449223 MIER1Q8N108 512 aa26.38■■□□□ 1.81
RPS28-202ENST00000449223 CADPS2Q86UW7 1296 aa26.37■■□□□ 1.81
RPS28-202ENST00000449223 ZNF692Q9BU19 519 aaPredicted RBP26.37■■□□□ 1.81
RPS28-202ENST00000449223 C1orf167Q5SNV9 1468 aa26.36■■□□□ 1.81
RPS28-202ENST00000449223 EDC4Q6P2E9 1401 aaKnown RBP26.36■■□□□ 1.81
RPS28-202ENST00000449223 NUTM2FA1L443 756 aa26.36■■□□□ 1.81
RPS28-202ENST00000449223 KIF1AQ12756 1690 aa26.36■■□□□ 1.81
RPS28-202ENST00000449223 PARD3Q8TEW0 1356 aa26.35■■□□□ 1.81
RPS28-202ENST00000449223 ATF3P18847 181 aa26.34■■□□□ 1.81
RPS28-202ENST00000449223 NSD2O96028 1365 aa26.34■■□□□ 1.81
RPS28-202ENST00000449223 ACEP12821 1306 aa26.33■■□□□ 1.81
RPS28-202ENST00000449223 USP6P35125 1406 aa26.32■■□□□ 1.8
RPS28-202ENST00000449223 CGNL1Q0VF96 1302 aa26.32■■□□□ 1.8
RPS28-202ENST00000449223 KIF20BQ96Q89 1820 aa26.32■■□□□ 1.8
RPS28-202ENST00000449223 ANKRD26Q9UPS8 1709 aa26.32■■□□□ 1.8
RPS28-202ENST00000449223 SSH2Q76I76 1423 aa26.32■■□□□ 1.8
RPS28-202ENST00000449223 RALBP1Q15311 655 aa26.31■■□□□ 1.8
RPS28-202ENST00000449223 BRD4O60885 1362 aaPredicted RBP26.3■■□□□ 1.8
RPS28-202ENST00000449223 PHF8Q9UPP1 1060 aa26.29■■□□□ 1.8
RPS28-202ENST00000449223 PMFBP1Q8TBY8 1022 aa26.26■■□□□ 1.79
RPS28-202ENST00000449223 CCER2I3L3R5 266 aa26.25■■□□□ 1.79
RPS28-202ENST00000449223 ESCO1Q5FWF5 840 aa26.25■■□□□ 1.79
RPS28-202ENST00000449223 CC2D1BQ5T0F9 858 aaKnown RBP26.24■■□□□ 1.79
RPS28-202ENST00000449223 NGDNQ8NEJ9 315 aaKnown RBP26.24■■□□□ 1.79
RPS28-202ENST00000449223 ORAI2Q96SN7 254 aa26.23■■□□□ 1.79
RPS28-202ENST00000449223 TTC21AQ8NDW8 1320 aa26.22■■□□□ 1.79
RPS28-202ENST00000449223 FYB1O15117 783 aa26.22■■□□□ 1.79
RPS28-202ENST00000449223 USP54Q70EL1 1684 aa26.21■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms