RNA–Protein interactions for RNA: ENST00000446876.1

HDAC4-204, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 554 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-204ENST00000446876 SAFB2Q14151 953 aaKnown RBP eCLIP21.45■■□□□ 1.02
HDAC4-204ENST00000446876 BRINP3Q76B58 766 aa21.45■■□□□ 1.02
HDAC4-204ENST00000446876 TRAK1Q9UPV9 953 aa21.45■■□□□ 1.02
HDAC4-204ENST00000446876 C1orf167Q5SNV9 1468 aa21.45■■□□□ 1.02
HDAC4-204ENST00000446876 AHDC1Q5TGY3 1603 aaPredicted RBP21.44■■□□□ 1.02
HDAC4-204ENST00000446876 ARHGEF28Q8N1W1 1705 aaKnown RBP21.44■■□□□ 1.02
HDAC4-204ENST00000446876 PRAM1Q96QH2 718 aa21.44■■□□□ 1.02
HDAC4-204ENST00000446876 NHSL1Q5SYE7 1610 aa21.43■■□□□ 1.02
HDAC4-204ENST00000446876 FMN2Q9NZ56 1722 aa21.43■■□□□ 1.02
HDAC4-204ENST00000446876 MED1Q15648 1581 aaPredicted RBP21.42■■□□□ 1.02
HDAC4-204ENST00000446876 SIRT1Q96EB6 747 aa21.41■■□□□ 1.02
HDAC4-204ENST00000446876 NBPF1Q3BBV0 1214 aa21.4■■□□□ 1.02
HDAC4-204ENST00000446876 NUTM2FA1L443 756 aa21.39■■□□□ 1.01
HDAC4-204ENST00000446876 DDX17Q92841 729 aaKnown RBP21.39■■□□□ 1.01
HDAC4-204ENST00000446876 POGKQ9P215 609 aa21.39■■□□□ 1.01
HDAC4-204ENST00000446876 TRPM1Q7Z4N2 1603 aa21.39■■□□□ 1.01
HDAC4-204ENST00000446876 RGPD8O14715 1765 aaPredicted RBP21.38■■□□□ 1.01
HDAC4-204ENST00000446876 ORAI2Q96SN7 254 aa21.38■■□□□ 1.01
HDAC4-204ENST00000446876 DISP3Q9P2K9 1392 aa21.37■■□□□ 1.01
HDAC4-204ENST00000446876 ADGRB2O60241 1585 aa21.36■■□□□ 1.01
HDAC4-204ENST00000446876 TONSLQ96HA7 1378 aa21.35■■□□□ 1.01
HDAC4-204ENST00000446876 MINK1Q8N4C8 1332 aaPredicted RBP21.34■■□□□ 1.01
HDAC4-204ENST00000446876 HIRIP3Q9BW71 556 aaPredicted RBP21.34■■□□□ 1.01
HDAC4-204ENST00000446876 NBPF8Q3BBV2 869 aa21.32■■□□□ 1
HDAC4-204ENST00000446876 ESCO1Q5FWF5 840 aa21.32■■□□□ 1
HDAC4-204ENST00000446876 USP32Q8NFA0 1604 aa21.32■■□□□ 1
HDAC4-204ENST00000446876 SHPRHQ149N8 1683 aa21.31■■□□□ 1
HDAC4-204ENST00000446876 JCADQ9P266 1359 aa21.31■■□□□ 1
HDAC4-204ENST00000446876 KIF1AQ12756 1690 aa21.28■■□□□ 1
HDAC4-204ENST00000446876 QRICH2Q9H0J4 1663 aa21.28■■□□□ 1
HDAC4-204ENST00000446876 ROCK2O75116 1388 aaKnown RBP21.27■■□□□ 1
HDAC4-204ENST00000446876 XPCQ01831 940 aaPredicted RBP21.25■□□□□ 0.99
HDAC4-204ENST00000446876 LRP6O75581 1613 aa21.25■□□□□ 0.99
HDAC4-204ENST00000446876 TULP4Q9NRJ4 1543 aa21.24■□□□□ 0.99
HDAC4-204ENST00000446876 FOXO3O43524 673 aa21.24■□□□□ 0.99
HDAC4-204ENST00000446876 PXDNQ92626 1479 aa21.24■□□□□ 0.99
HDAC4-204ENST00000446876 SOS2Q07890 1332 aaPredicted RBP21.24■□□□□ 0.99
HDAC4-204ENST00000446876 PRR36Q9H6K5 1346 aa21.24■□□□□ 0.99
HDAC4-204ENST00000446876 ANKARQ7Z5J8 1434 aa21.23■□□□□ 0.99
HDAC4-204ENST00000446876 WASLO00401 505 aaPredicted RBP21.23■□□□□ 0.99
HDAC4-204ENST00000446876 RALGAPBQ86X10 1494 aa21.22■□□□□ 0.99
HDAC4-204ENST00000446876 NPHP3Q7Z494 1330 aa21.22■□□□□ 0.99
HDAC4-204ENST00000446876 CENPJQ9HC77 1338 aaPredicted RBP21.22■□□□□ 0.99
HDAC4-204ENST00000446876 PNPLA6Q8IY17 1366 aa21.22■□□□□ 0.99
HDAC4-204ENST00000446876 LRRC59Q96AG4 307 aaKnown RBP21.21■□□□□ 0.99
HDAC4-204ENST00000446876 PHF23Q9BUL5 403 aaPredicted RBP21.21■□□□□ 0.99
HDAC4-204ENST00000446876 PHF8Q9UPP1 1060 aa21.21■□□□□ 0.99
HDAC4-204ENST00000446876 GPRASP1Q5JY77 1395 aa21.2■□□□□ 0.98
HDAC4-204ENST00000446876 ATP7BP35670 1465 aa21.2■□□□□ 0.98
HDAC4-204ENST00000446876 ITSN1Q15811 1721 aa21.19■□□□□ 0.98
HDAC4-204ENST00000446876 PMFBP1Q8TBY8 1022 aa21.19■□□□□ 0.98
HDAC4-204ENST00000446876 SPATA31A6Q5VVP1 1343 aa21.19■□□□□ 0.98
HDAC4-204ENST00000446876 EIF3AQ14152 1382 aaKnown RBP21.19■□□□□ 0.98
HDAC4-204ENST00000446876 NUTM2BA6NNL0 878 aaPredicted RBP21.18■□□□□ 0.98
HDAC4-204ENST00000446876 NUTM2EB1AL46 878 aaPredicted RBP21.18■□□□□ 0.98
HDAC4-204ENST00000446876 NUTM2AQ8IVF1 878 aaPredicted RBP21.18■□□□□ 0.98
HDAC4-204ENST00000446876 TOPAZ1Q8N9V7 1692 aa21.18■□□□□ 0.98
HDAC4-204ENST00000446876 ILDR2Q71H61 639 aa21.17■□□□□ 0.98
HDAC4-204ENST00000446876 CCER1Q8TC90 406 aaPredicted RBP21.17■□□□□ 0.98
HDAC4-204ENST00000446876 CDK19Q9BWU1 502 aa21.17■□□□□ 0.98
HDAC4-204ENST00000446876 CLSPNQ9HAW4 1339 aa21.16■□□□□ 0.98
HDAC4-204ENST00000446876 COL22A1Q8NFW1 1626 aaPredicted RBP21.15■□□□□ 0.98
HDAC4-204ENST00000446876 CARD11Q9BXL7 1154 aa21.15■□□□□ 0.98
HDAC4-204ENST00000446876 KRT28Q7Z3Y7 464 aa21.14■□□□□ 0.97
HDAC4-204ENST00000446876 NUDT16Q96DE0 195 aaKnown RBP21.14■□□□□ 0.97
HDAC4-204ENST00000446876 RGS17Q9UGC6 210 aaPredicted RBP21.14■□□□□ 0.97
HDAC4-204ENST00000446876 MEX3CQ5U5Q3 659 aaKnown RBP21.13■□□□□ 0.97
HDAC4-204ENST00000446876 TRPM3Q9HCF6 1732 aaPredicted RBP21.12■□□□□ 0.97
HDAC4-204ENST00000446876 CABP2Q9NPB3 220 aa21.11■□□□□ 0.97
HDAC4-204ENST00000446876 SPATA31A3Q5VYP0 1347 aa21.1■□□□□ 0.97
HDAC4-204ENST00000446876 SRPK2P78362 688 aaKnown RBP21.1■□□□□ 0.97
HDAC4-204ENST00000446876 PSME1Q06323 249 aa21.09■□□□□ 0.97
HDAC4-204ENST00000446876 TNS3Q68CZ2 1445 aa21.09■□□□□ 0.97
HDAC4-204ENST00000446876 NGDNQ8NEJ9 315 aaKnown RBP21.07■□□□□ 0.96
HDAC4-204ENST00000446876 ALS2Q96Q42 1657 aa21.06■□□□□ 0.96
HDAC4-204ENST00000446876 PLEKHG5O94827 1062 aa21.06■□□□□ 0.96
HDAC4-204ENST00000446876 ADAMTS2O95450 1211 aa21.06■□□□□ 0.96
HDAC4-204ENST00000446876 SBNO1A3KN83 1393 aa21.06■□□□□ 0.96
HDAC4-204ENST00000446876 ABCA3Q99758 1704 aa21.06■□□□□ 0.96
HDAC4-204ENST00000446876 PPIP5K1Q6PFW1 1433 aa21.05■□□□□ 0.96
HDAC4-204ENST00000446876 MARF1Q9Y4F3 1742 aaKnown RBP21.05■□□□□ 0.96
HDAC4-204ENST00000446876 CCDC61Q9Y6R9 512 aa21.05■□□□□ 0.96
HDAC4-204ENST00000446876 EVC2Q86UK5 1308 aa21.04■□□□□ 0.96
HDAC4-204ENST00000446876 LMOD2Q6P5Q4 547 aa21.04■□□□□ 0.96
HDAC4-204ENST00000446876 POTEAQ6S8J7 498 aa21.04■□□□□ 0.96
HDAC4-204ENST00000446876 C8orf37Q96NL8 207 aa21.04■□□□□ 0.96
HDAC4-204ENST00000446876 TIMELESSQ9UNS1 1208 aa21.03■□□□□ 0.96
HDAC4-204ENST00000446876 ACEP12821 1306 aa21.03■□□□□ 0.96
HDAC4-204ENST00000446876 POLR3AO14802 1390 aaPredicted RBP21.02■□□□□ 0.96
HDAC4-204ENST00000446876 SBNO2Q9Y2G9 1366 aa21.01■□□□□ 0.95
HDAC4-204ENST00000446876 AFF2P51816 1311 aa21.01■□□□□ 0.95
HDAC4-204ENST00000446876 PLEKHG3A1L390 1219 aa21■□□□□ 0.95
HDAC4-204ENST00000446876 CABLES1Q8TDN4 633 aa21■□□□□ 0.95
HDAC4-204ENST00000446876 ARHGEF10O15013 1369 aa20.99■□□□□ 0.95
HDAC4-204ENST00000446876 PAK3O75914 559 aaPredicted RBP20.99■□□□□ 0.95
HDAC4-204ENST00000446876 USP47Q96K76 1375 aa20.98■□□□□ 0.95
HDAC4-204ENST00000446876 CRYBG1Q9Y4K1 1723 aa20.98■□□□□ 0.95
HDAC4-204ENST00000446876 ST20-MTHFSA0A0A6YYL1 179 aa20.98■□□□□ 0.95
HDAC4-204ENST00000446876 CABP1Q9NZU7 370 aa20.98■□□□□ 0.95
HDAC4-204ENST00000446876 AKAP12Q02952 1782 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms