RNA–Protein interactions for RNA: ENST00000444502.5

TOP3B-210, Transcript of DNA topoisomerase III beta, humanhuman

TSL 2

Gene TOP3B, Length 4,163 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3B-210ENST00000444502 BECN1Q14457 450 aa13.37□□□□□ -0.27
TOP3B-210ENST00000444502 SPRYD3Q8NCJ5 442 aa13.37□□□□□ -0.27
TOP3B-210ENST00000444502 MS4A1P11836 297 aa13.37□□□□□ -0.27
TOP3B-210ENST00000444502 CALD1Q05682 793 aaKnown RBP13.36□□□□□ -0.27
TOP3B-210ENST00000444502 STK31Q9BXU1 1019 aa13.36□□□□□ -0.27
TOP3B-210ENST00000444502 ABCA8O94911 1581 aa13.35□□□□□ -0.27
TOP3B-210ENST00000444502 DUOX2Q9NRD8 1548 aa13.35□□□□□ -0.27
TOP3B-210ENST00000444502 RIPK4P57078 832 aa13.35□□□□□ -0.27
TOP3B-210ENST00000444502 RWDD1Q9H446 243 aaPredicted RBP13.35□□□□□ -0.27
TOP3B-210ENST00000444502 NLRP2Q9NX02 1062 aa13.35□□□□□ -0.27
TOP3B-210ENST00000444502 A2MP01023 1474 aa13.35□□□□□ -0.27
TOP3B-210ENST00000444502 ABCC2Q92887 1545 aa13.35□□□□□ -0.27
TOP3B-210ENST00000444502 NGEFQ8N5V2 710 aa13.35□□□□□ -0.27
TOP3B-210ENST00000444502 SYTL4Q96C24 671 aaPredicted RBP13.35□□□□□ -0.27
TOP3B-210ENST00000444502 UHRF1BP1Q6BDS2 1440 aa13.35□□□□□ -0.27
TOP3B-210ENST00000444502 NOS1P29475 1434 aa13.34□□□□□ -0.27
TOP3B-210ENST00000444502 AMER1Q5JTC6 1135 aaPredicted RBP13.34□□□□□ -0.27
TOP3B-210ENST00000444502 TAOK2Q9UL54 1235 aa13.34□□□□□ -0.27
TOP3B-210ENST00000444502 IPO8O15397 1037 aaKnown RBP13.34□□□□□ -0.27
TOP3B-210ENST00000444502 TEFQ10587 303 aa13.34□□□□□ -0.27
TOP3B-210ENST00000444502 NSD3Q9BZ95 1437 aa13.33□□□□□ -0.28
TOP3B-210ENST00000444502 KDM5BQ9UGL1 1544 aa13.33□□□□□ -0.28
TOP3B-210ENST00000444502 SCAF11Q99590 1463 aaKnown RBP13.33□□□□□ -0.28
TOP3B-210ENST00000444502 SLKQ9H2G2 1235 aaPredicted RBP13.32□□□□□ -0.28
TOP3B-210ENST00000444502 PARD3Q8TEW0 1356 aa13.32□□□□□ -0.28
TOP3B-210ENST00000444502 EIF2S2P20042 333 aaKnown RBP13.32□□□□□ -0.28
TOP3B-210ENST00000444502 TSR2Q969E8 191 aaKnown RBP13.32□□□□□ -0.28
TOP3B-210ENST00000444502 SLFN5Q08AF3 891 aa13.32□□□□□ -0.28
TOP3B-210ENST00000444502 C1orf141Q5JVX7 400 aa13.32□□□□□ -0.28
TOP3B-210ENST00000444502 FAM161AQ3B820 660 aa13.31□□□□□ -0.28
TOP3B-210ENST00000444502 ARHGEF12Q9NZN5 1544 aa13.31□□□□□ -0.28
TOP3B-210ENST00000444502 ZKSCAN2Q63HK3 967 aa13.31□□□□□ -0.28
TOP3B-210ENST00000444502 LMOD3Q0VAK6 560 aa13.31□□□□□ -0.28
TOP3B-210ENST00000444502 RRS1Q15050 365 aaKnown RBP13.31□□□□□ -0.28
TOP3B-210ENST00000444502 RPGRIP1LQ68CZ1 1315 aa13.3□□□□□ -0.28
TOP3B-210ENST00000444502 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.3□□□□□ -0.285e-7■□□□□ 8.9
TOP3B-210ENST00000444502 CHMP3Q9Y3E7 222 aa13.3□□□□□ -0.28
TOP3B-210ENST00000444502 RTEL1-TNFRSF6BF6WH68 1400 aa13.3□□□□□ -0.28
TOP3B-210ENST00000444502 PIP4K2BP78356 416 aa13.29□□□□□ -0.28
TOP3B-210ENST00000444502 DUSP27Q5VZP5 1158 aa13.29□□□□□ -0.28
TOP3B-210ENST00000444502 AMOTL2Q9Y2J4 779 aa13.29□□□□□ -0.28
TOP3B-210ENST00000444502 ERCC6L2Q5T890 1561 aa13.29□□□□□ -0.28
TOP3B-210ENST00000444502 WWC1Q8IX03 1113 aa13.29□□□□□ -0.28
TOP3B-210ENST00000444502 C14orf93Q9H972 538 aaKnown RBP13.29□□□□□ -0.28
TOP3B-210ENST00000444502 STRN4Q9NRL3 753 aa13.29□□□□□ -0.28
TOP3B-210ENST00000444502 NUDT16Q96DE0 195 aaKnown RBP13.28□□□□□ -0.28
TOP3B-210ENST00000444502 TPRNQ4KMQ1 711 aa13.28□□□□□ -0.28
TOP3B-210ENST00000444502 FOXO3O43524 673 aa13.28□□□□□ -0.28
TOP3B-210ENST00000444502 NFKBIBQ15653 356 aa13.28□□□□□ -0.28
TOP3B-210ENST00000444502 CARD14Q9BXL6 1004 aa13.28□□□□□ -0.28
TOP3B-210ENST00000444502 CHMP4BQ9H444 224 aaKnown RBP13.28□□□□□ -0.28
TOP3B-210ENST00000444502 CCDC61Q9Y6R9 512 aa13.28□□□□□ -0.28
TOP3B-210ENST00000444502 GPRASP1Q5JY77 1395 aa13.28□□□□□ -0.28
TOP3B-210ENST00000444502 SAMD9LQ8IVG5 1584 aa13.28□□□□□ -0.28
TOP3B-210ENST00000444502 MFAP1P55081 439 aaKnown RBP13.28□□□□□ -0.28
TOP3B-210ENST00000444502 EXOSC9Q06265 439 aaKnown RBP13.28□□□□□ -0.28
TOP3B-210ENST00000444502 PRKAR2BP31323 418 aa13.27□□□□□ -0.29
TOP3B-210ENST00000444502 ZC3H6P61129 1189 aaKnown RBP13.27□□□□□ -0.29
TOP3B-210ENST00000444502 DZIP1LQ8IYY4 767 aaKnown RBP13.27□□□□□ -0.29
TOP3B-210ENST00000444502 RAPGEF4Q8WZA2 1011 aa13.27□□□□□ -0.29
TOP3B-210ENST00000444502 ADGBQ8N7X0 1667 aa13.27□□□□□ -0.29
TOP3B-210ENST00000444502 NUTM2BA6NNL0 878 aaPredicted RBP13.27□□□□□ -0.29
TOP3B-210ENST00000444502 NUTM2EB1AL46 878 aaPredicted RBP13.27□□□□□ -0.29
TOP3B-210ENST00000444502 NUTM2AQ8IVF1 878 aaPredicted RBP13.27□□□□□ -0.29
TOP3B-210ENST00000444502 HSPA2P54652 639 aa13.26□□□□□ -0.29
TOP3B-210ENST00000444502 FBLN1P23142 703 aa13.26□□□□□ -0.29
TOP3B-210ENST00000444502 BACH2Q9BYV9 841 aa13.26□□□□□ -0.29
TOP3B-210ENST00000444502 ZNF518AQ6AHZ1 1483 aa13.25□□□□□ -0.29
TOP3B-210ENST00000444502 SULT6B1Q6IMI4 303 aa13.24□□□□□ -0.29
TOP3B-210ENST00000444502 TTC37Q6PGP7 1564 aa13.24□□□□□ -0.29
TOP3B-210ENST00000444502 KCNJ4P48050 445 aa13.24□□□□□ -0.29
TOP3B-210ENST00000444502 MEX3CQ5U5Q3 659 aaKnown RBP13.24□□□□□ -0.29
TOP3B-210ENST00000444502 PLA2R1Q13018 1463 aa13.23□□□□□ -0.29
TOP3B-210ENST00000444502 COL17A1Q9UMD9 1497 aaPredicted RBP13.23□□□□□ -0.29
TOP3B-210ENST00000444502 FAM43AQ8N2R8 423 aa13.23□□□□□ -0.29
TOP3B-210ENST00000444502 LRPPRCP42704 1394 aaKnown RBP13.23□□□□□ -0.29
TOP3B-210ENST00000444502 ZNF428Q96B54 188 aa13.23□□□□□ -0.29
TOP3B-210ENST00000444502 ARHGEF5Q12774 1597 aa13.23□□□□□ -0.29
TOP3B-210ENST00000444502 CFAP65Q6ZU64 1925 aaKnown RBP13.23□□□□□ -0.29
TOP3B-210ENST00000444502 GZF1Q9H116 711 aaPredicted RBP13.23□□□□□ -0.29
TOP3B-210ENST00000444502 CASC1Q6TDU7 716 aa13.22□□□□□ -0.29
TOP3B-210ENST00000444502 PLEKHH1Q9ULM0 1364 aa13.22□□□□□ -0.29
TOP3B-210ENST00000444502 CDC42BPAQ5VT25 1732 aa13.22□□□□□ -0.29
TOP3B-210ENST00000444502 NME9Q86XW9 330 aa13.22□□□□□ -0.29
TOP3B-210ENST00000444502 TTC5Q8N0Z6 440 aa13.22□□□□□ -0.29
TOP3B-210ENST00000444502 SPINK5Q9NQ38 1064 aaPredicted RBP13.22□□□□□ -0.29
TOP3B-210ENST00000444502 TSPYL4Q9UJ04 414 aa13.21□□□□□ -0.29
TOP3B-210ENST00000444502 GTF2E1P29083 439 aaPredicted RBP13.21□□□□□ -0.3
TOP3B-210ENST00000444502 PDE3AQ14432 1141 aa13.21□□□□□ -0.3
TOP3B-210ENST00000444502 THUMPD2Q9BTF0 503 aaKnown RBP13.21□□□□□ -0.3
TOP3B-210ENST00000444502 TNRQ92752 1358 aa13.2□□□□□ -0.3
TOP3B-210ENST00000444502 ZNF692Q9BU19 519 aaPredicted RBP13.2□□□□□ -0.3
TOP3B-210ENST00000444502 ANKRD45Q5TZF3 282 aa13.2□□□□□ -0.3
TOP3B-210ENST00000444502 PRDM11Q9NQV5 511 aa13.2□□□□□ -0.3
TOP3B-210ENST00000444502 TRIM44Q96DX7 344 aaPredicted RBP13.2□□□□□ -0.3
TOP3B-210ENST00000444502 KDM5CP41229 1560 aa13.19□□□□□ -0.3
TOP3B-210ENST00000444502 CHD1O14646 1710 aa13.19□□□□□ -0.3
TOP3B-210ENST00000444502 NAP1L2Q9ULW6 460 aaPredicted RBP13.19□□□□□ -0.3
TOP3B-210ENST00000444502 DDX19BQ9UMR2 479 aa13.19□□□□□ -0.3
TOP3B-210ENST00000444502 HSP90AB1P08238 724 aaKnown RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms